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Coexpression cluster:C882: Difference between revisions

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|gostat_on_coexpression_clusters=GO:0051789!response to protein stimulus!0.0451548333922053!90993$GO:0006986!response to unfolded protein!0.0451548333922053!90993
|gostat_on_coexpression_clusters=GO:0051789!response to protein stimulus!0.0451548333922053!90993$GO:0006986!response to unfolded protein!0.0451548333922053!90993
|id=C882
|id=C882
|ontology_enrichment_celltype=CL:0000055!1.51e-38!180;CL:0000057!3.23e-23!75;CL:0000183!5.38e-15!59;CL:0000680!8.53e-15!57;CL:0000056!8.53e-15!57;CL:0000355!8.53e-15!57;CL:0000187!1.84e-14!54;CL:0000393!1.67e-13!60;CL:0000211!1.67e-13!60;CL:0000192!4.91e-12!42;CL:0000514!4.91e-12!42;CL:0002620!4.90e-10!23;CL:0000359!4.63e-08!32;CL:0000222!1.21e-07!119
|ontology_enrichment_celltype=CL:0000057!3.80e-27!76;CL:0000680!8.51e-15!58;CL:0000056!8.51e-15!58;CL:0000355!8.51e-15!58;CL:0000183!1.23e-14!59;CL:0000187!2.45e-14!55;CL:0000192!7.09e-13!43;CL:0000514!7.09e-13!43;CL:0000055!1.70e-12!106;CL:0000393!5.11e-12!61;CL:0000211!5.11e-12!61;CL:0002620!8.58e-11!23;CL:0000048!3.34e-09!427;CL:0000723!1.67e-08!433;CL:0000034!2.38e-08!441;CL:0000359!4.56e-08!32;CL:0002334!2.13e-07!12
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000914!2.31e-17!83;UBERON:0002329!2.31e-17!83;UBERON:0003077!2.31e-17!83;UBERON:0003059!2.31e-17!83;UBERON:0007282!2.31e-17!83;UBERON:0009618!2.31e-17!83;UBERON:0007285!2.31e-17!83;UBERON:0005256!5.05e-16!143;UBERON:0004290!8.41e-16!70;UBERON:0002385!1.02e-14!63;UBERON:0001015!1.02e-14!63;UBERON:0000383!1.02e-14!63;UBERON:0001134!1.42e-14!61;UBERON:0002036!1.42e-14!61;UBERON:0003082!1.42e-14!61;UBERON:0000486!1.43e-13!82;UBERON:0000475!2.14e-12!365;UBERON:0000481!2.70e-10!347;UBERON:0002100!1.04e-09!216;UBERON:0003102!5.53e-09!95;UBERON:0003104!3.49e-08!238;UBERON:0009142!3.49e-08!238;UBERON:0002199!6.17e-08!45;UBERON:0002416!6.17e-08!45;UBERON:0004872!1.05e-07!84;UBERON:0000490!1.86e-07!138;UBERON:0000468!6.45e-07!659
|ontology_enrichment_uberon=UBERON:0007524!9.89e-15!73;UBERON:0002329!1.01e-14!71;UBERON:0003059!1.01e-14!71;UBERON:0007282!1.01e-14!71;UBERON:0004290!1.01e-14!71;UBERON:0009618!1.01e-14!71;UBERON:0002385!2.54e-14!64;UBERON:0001015!2.54e-14!64;UBERON:0000383!2.54e-14!64;UBERON:0003077!3.34e-14!72;UBERON:0007285!3.34e-14!72;UBERON:0001134!4.08e-14!62;UBERON:0002036!4.08e-14!62;UBERON:0003082!4.08e-14!62;UBERON:0005256!1.51e-12!122;UBERON:0007503!1.52e-12!78;UBERON:0003104!3.38e-12!160;UBERON:0009142!3.38e-12!160;UBERON:0000486!5.17e-12!83;UBERON:0003102!1.39e-09!99;UBERON:0002199!2.99e-08!46;UBERON:0002416!2.99e-08!46;UBERON:0000490!1.65e-07!148;UBERON:0000475!2.03e-07!264;UBERON:0005156!7.59e-07!59;UBERON:0000990!7.59e-07!59;UBERON:0004872!8.60e-07!83
|tfbs_overrepresentation=0.379905,0.165882,0.0394106,0.136425,0.487545,0.27095,0.00796797,0.79935,0.0949833,0.0751516,0.0109087,0.535177,0.131075,0.332321,0.383007,0.0161863,0.36612,0.0392056,0.150322,0.290404,0.465867,0.347332,0.226321,0.258532,0.119603,0.0376487,0.0347356,0.248219,0.079948,0.0356257,0.497451,0.0519841,0.0531246,0.155978,0.186593,0.232613,0.863688,0.123445,0.319343,0.187061,0.262412,0.0720324,0.36403,0.4567,0.0580028,0.00569763,0.109769,0.122192,0.298075,0.321315,0.394657,0.153891,0.196072,0.253845,0.485667,0.110878,0.288967,0.512016,0.217047,0.284457,0.0857174,0.384611,0.291703,0.210978,0.154936,0.143948,0.0433834,0.169439,0.236629,0.422102,0.173526,0.189603,0.244032,0.317093,0.0222609,0.0504791,0.262446,0.125439,0.107638,0.0216001,0.260326,0.0434934,0.122158,0.306485,0.276409,0.581213,0.18087,0.505147,0.534433,0.176677,0.235838,0.141509,0.0370985,0.135495,0.0300494,0.00625352,0.0057936,0.0903256,0.25323,0.0732963,0.162733,0.253136,0.368092,0.107129,0.523781,0.117829,0.187804,0.00877646,0.373254,0.242682,0.453858,0.0985633,0.0859814,0.0521236,0.273963,0.0978783,0.0597833,0.160517,0.0751685,0.23102,0.421387,0.164575,0.0762724,0.235903,0.27674,0.116686,0.248136,0.0437269,0.029362,0.352634,0.168295,0.208122,0.162015,0.0668125,0.00810513,0.290508,0.182244,0.156991,0.0958807,0.0118189,0.0667834,0.336046,0.495496,0.398784,0.00202531,0.19387,0.268136,0.0292737,0.112335,0.320461,0.489241,0.372067,0.450068,0.0776445,0.122732,0.312819,0.207929,0.183254,0.147215,0.0978015,0.539398,0.259477,0.310698,0.381069,0.616518,0.305161,0.115353,0.335504,0.116243,0.104115,0.448004,0.358884,0.288375,0.153773,0.00215966,0.0332752,0.364685,0.452289,0.445497,0.103138,0.404846,0.324259,0.0799857,0.308193,0.205269,0.315846,0.454723,0.115749,0.228576,0.435542,0.288225,0.129254,0.325324,0.541351,0.301358,0.134676,0.216866,0.170174,0.0192169,0.294254,0.244693,0.17047,0.0896732,0.171015,0.356037,0.593807,0.01657,0.0139438,0.499999,0.0220767,0.131385,0.281536,0.321205,0.301899,0.675159,0.107503,0.416147,0.273288,0.17733,0.278242,0.0114832,0.0141665,0.0929524,0.00021845,0.205617,0.333772,0.361394,0.23638,0.0154615,0.16914,0.0440552,0.000784783,0.120343,0.00189867,0.000274286,0.254337,0.135096,0.599827,0.414677,0.000919816,0.453603,0.724097,0.267103,0.229137,0.309856,0.356902,0.0274944,0.298939,0.0142331,0.311599,0.405286,0.458984,0.460135,0.266199,0.266349,0.406605,1.6132e-06,0.491561,0.194561,0.00557091,0.1745,0.0209492,0.414414,0.337164,0.100007,0.22402,0.00225878,0.251548,0.314053,0.0237493,0.256389,0.178112,0.00215227,0.26293,0.237927,0.10985,0.0665487,9.82502e-05,0.00527966,0.00277945,0.0350823,0.452021,0.00102144,0.726388,0.00166815,0.348023,0.597321,0.000510144,0.167394,0.0264761,0.148048,0.700182,0.446123,0.0337254,0.0025575,0.323523,7.55536e-07,0.645336,0.0216198,0.448499,0.00154461,0.0215892,0.46313,0.00050788,0.12244,0.00161387,0.0485625,6.48397e-09,0.0390528,0.235076,0.414799,0.0413982,0.206816,0.000557641,0.0732204,0.0138558,0.0243357,0.863015,0.219247,0.0752827,0.292795,0.000214418,0.0290562,0.00112109,0.00148099,0.0022829,0.0805004,0.0283186,0.00143336,0.00422,0.264868,0.119578,0.0812802,0.0215046,0.00388682,8.42273e-05,0.75453,0.120541,0.0665608,0.123232,0.308069,0.587923,0.592113,0.619475,0.0094455,0.459973,0.00988567,0.200859,0.245187,0.0789665,0.16095,0.00178638,0.183596,0.575816,0.000570309,0.853123,0.100894,0.187965,0.0223064,0.126181,0.000535983,0.0323865,0.00552148,0.474216,0.000189659,0.000185295,0.0360319,0.264787,0.169855,0.310268,5.27537e-06,0.129311,0.207912,0.04462,0.386557,0.054341,0.0613715,0.649146,0.134145,0.308783,0.640884,0.00745075,0.135632,0.623702,0.00182995,1.62459e-06,0.540073,0.127047,0.142216,0.0151503,0.014586,0.00154382,0.317159,0.226355,9.36968e-05,0.697416,0.346165,0.374554,0.0817912,0.767978,0.170317,0.105351,0.551339,0.58188,0.0141639,0.133308,0.357482,0.0134695,0.35231,0.267558,7.48374e-06,0.280105,0.265974,5.28588e-05,0.300331,0.299098,0.00221129,0.00583287,0.0746784,0.633904,0.59893,0.0468046,0.00796052,0.206973,0.0814628,0.156015,0.559318,0.132778,0.153325,0.00218181,0.0158124,0.00853865,0.242532,0.711558,0.433169,0.628964,0.367837,0.0380928,0.378627,0.406484,0.0500069,0.0533863,0.54746,0.467603,0.0326163,0.168254,0.0265283,0.34044,0.0411163,0.205883,0.370267,0.305321,0.205185,0.368812,0.182206,0.107805,0.195042,0.157921,0.473551,0.216218,0.162951,0.373485,0.531611,0.0321263,0.0332385,0.521746,0.13482,0.29961,0.64109,0.125012,0.0964534,0.333468,0.352452,0.287616,0.616277,0.176796,0.763267,0.0527744,0.296191,0.258597,0.77346,0.133067,0.427392,0.305866,0.282022,0.246314,0.238193,0.0970884,0.288143,0.125904,0.0116264,0.0604221,0.00874798,0.158789,0.000548858,0.720751,0.14256,0.228642,0.187038,0.123008,0.298062,0.0395824,0.123571,0.479486,0.346481,0.465984,0.137686,0.0305157,0.79043,0.336393,0.440086,0.125806,0.000279979,0.0315812,0.259353,0.0333885,0.175043,0.287981,0.619307,0.0143703,0.435843,0.366423,0.0061372,0.0875223,0.345012,0.127712,0.000620582,0.1568,0.392756,0.02639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38,0.264715,0.407611,0.326688,0.248037,0.158248,0.0796495,0.887822,0.073489,0.0431634,0.184427,0.160618,0.0401679,0.22169,0.210572,0.411099,0.136624,0.155833,0.21615,0.159259,0.0075234,0.100087,0.112146,0.0125787,0.428847,0.48998,0.139629,0.438323,0.0523938,0.0959729,0.139816,0.171121,0.113797,0.16848,0.00659367,0.324265,0.292348,0.29508,0.000362203,0.0833765,0.689642,0.374024,0.112075,0.24008,0.156166,0.372926,0.584327,0.167752,0.132661,0.343965,0.443167,0.049147,0.637515,0.211428,0.111483,0.00231762,0.123633,0.125795,0.380873,0.367185,0.422547,0.365324,0.24384,0.670902,0.083134,0.135303,0.25849,0.261144,0.348029,0.214787,0.293114,0.338231,0.0677673,0.000280328,0.035463,0.147592,0.269541,0.142724,0.174255,0.209861,0.255464,0.372942,0.098628,0.206442,0.0754772,0.220828,0.0166962,0.520448,0.273268,0.316704,0.473416,0.117941,0.907568,0.16296,0.136086,0.190539,0.17172,0.114801,0.657877,0.0212774,0.532484,0.643771,0.102996,0.331469,0.438676,0.850054,0.831415,0.153629,0.522141,0.29093,0.188743,0.292051,0.141017,0.260867,0.000741781,0.210037,0.130804,0.295543,0.196359,0.180187,0.393364,0.108866,0.347427,0.129025,0.15318,0.305064,0.253746,0.433211,0.282957,0.528444,0.161886,0.04755,0.211069,0.269481,0.391002,0.0283997,0.522285,0.000344451,0.00744623,0.434353,0.355652,0.38933,0.176485,0.471182,0.38278,0.878412,0.398405,0.200538,1.32601e-05,0.170045,0.373446,0.38724,0.264621,0.0918351,0.428823,0.475718,0.357753,0.540158,0.580594,0.639201,0.00064354,0.231141,0.0344614,0.302478,0.301311,0.461915,0.438026,0.00356451,0.0661728,0.212644,0.365126,0.270455,0.590817,0.279874,0.302298,0.0747253,0.106186,0.248067,0.0185484,0.421922,0.0258845,0.224837,0.458553,0.0151366,0.674122,4.66046e-07,0.167013,0.055244,0.118445,0.522209,0.187,0.465032,0.330826,0.104396,0.473141,0.343975,0.124796,0.349674,0.025064,0.402157,2.93805e-06,0.0220418,0.00133422,0.0910291,0.518187,0.0522026,0.0882466,0.265889,0.0294577,0.195557,0.15353,0.0216843,0.762905,0.123378,0.0939602,0.000383422,5.01804e-05,0.18732,0.0534523,0.0197457,0.101832,0.025879,0.748284,0.997866,0.0435961,0.00734123,0.327212,0.182588,0.266024,0.878534,0.223052,0.00243453,0.272901,1.62122e-06,0.555797,0.0837415,0.117594,0.0148684,0.000290434,0.565068,0.0132672,0.104692,0.204454,0.0871208,2.60347e-05,0.000262609,0.26489,0.410672,0.0621081,0.0948543,0.338404,0.114884,0.0143781,0.0457047,0.0479589,0.000309273,0.0587678,0.000706834,0.494538,0.00497608,0.49864,0.000127415,0.589099,0.495864,0.724355,0.765447,0.39901,0.0774762,0.214779,0.261599,0.677788,0.731401,0.415361,0.5445,0.319052,0.26543,0.0136218,0.677777,0.0231682,0.262422,0.304325,0.0275676,0.0223213,0.0239785,0.688628,0.00177098,0.711745,0.537008,5.6891e-12,0.382172,0.863141,0.00267347,0.529155,0.00634114,0.801122,0.555836,0.108497,0.0489226,0.0326442,0.109801,0.361435,0.124192,0.421792,0.483823,0.229876,0.0289071,0.0153517,0.11466,0.342619,0.409234,0.0261014,0.022442,0.0498241,2.89744e-05,0.437888,0.741759,0.554076,0.000702262,0.616391,0.412918,0.00238,0.000398625,0.0169848,0.192138,0.665579,0.562983,0.751633,0.0993228,0.0967733,0.00523056,3.35717e-06,0.00628466,0.215433,0.76543,7.968e-08,0.352485,0.00716905,0.167892,6.4412e-05,0.471539,0.00315748,0.0229358,0.667668,0.0399063,0.0189866,0.0411909,1.79662e-08,4.87094e-06,0.0165005,0.400219,0.251412,0.427483,3.77432e-05,1.48434e-06,0.00898842,0.483774,0.154027,0.183291,0.00158885,0.191441,0.289804,0.0857802,0.0329122,0.441318,0.21597,0.00325536,0.152117,0.0977699,0.132179,0.59289,0.130447,0.200614,0.602747,0.412715,0.0268225,0.413744,0.0396051,0.503232,0.24661,0.259678,0.420165,0.5818,0.0153124,0.0604408,0.502321,0.10523,0.447445,0.13711,0.527097,0.53086,0.00186887,0.000162515,0.169024,0.00062232,0.000458357,0.0601775,0.486977,0.0946253,0.254626,0.327893,0.448409,0.00804436,0.0177971,0.235347,0.344033,0.503902,0.0554067,0.529704,0.188703,0.00579224,0.0678802,0.302353,0.37651,0.54245,0.411826,0.184047,0.0188562,0.111096,0.18548,0.148563,0.130525,0.069424,0.147316,0.371205,0.396522,0.318983,0.267772,0.291371,0.168254,0.51798,0.40407,0.172158,0.478764,0.328268,0.594172,0.0260533,0.449854,0.40705,0.0130849,0.387463,0.0384465,0.327588,0.1256,0.459324,0.201671,0.5923,0.00246173,0.495225,0.51408,0.502377,0.368078,0.474502,0.0563474,0.309128,0.533737,0.000250346,0.0202506,0.488829,0.363467,0.482434,0.0100798,0.399782,0.343945,0.0130201,0.0413289,0.432612,0.44213,0.263525,0.148007,0.0268601,0.628217,0.522084,0.000149107,0.147915,0.287253,0.152349,0.152802,0.38832,0.216263,0.000294601,0.152699,0.685459,0.597602,0.50945,0.129789,0.549887,0.467691,0.22458,0.266409,0.180355,0.322962,0.179632,0.282128,0.186072,0.211757,0.338622,0.000457475,0.126579,0.187708,0.245457,0.106235,0.352719,0.496388,0.0900999,0.0828055,0.721601,0.0778925,0.233432,0.0128246,0.488202,0.538989,0.654598,0.584019,0.443905,0.632399,0.601983,0.345488,0.408688,0.499886,0.144276,0.637365,0.554869,0.00137797,0.308763,0.169082,0.00763466,0.307503,0.478305,0.470512,0.0185447,0.631734,0.578048,0.41706,0.533176,0.00342706,0.118525,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}}
}}

Revision as of 16:49, 19 October 2012


Full id: C882_Olfactory_Mesenchymal_Smooth_tenocyte_Osteoblast_Prostate_Fibroblast



Phase1 CAGE Peaks

Hg19::chr11:46333979..46333991,+p7@CREB3L1
Hg19::chr11:46341922..46341957,+p@chr11:46341922..46341957
+
Hg19::chr11:46342005..46342050,+p@chr11:46342005..46342050
+
Hg19::chr11:46342256..46342269,+p@chr11:46342256..46342269
+
Hg19::chr11:46342339..46342359,+p@chr11:46342339..46342359
+
Hg19::chr11:46342403..46342437,+p@chr11:46342403..46342437
+
Hg19::chr11:46342451..46342490,+p@chr11:46342451..46342490
+
Hg19::chr11:46342526..46342545,+p@chr11:46342526..46342545
+
Hg19::chr11:46342608..46342682,-p1@CU680777


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0051789response to protein stimulus0.0451548333922053
GO:0006986response to unfolded protein0.0451548333922053



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
dense mesenchyme tissue9.89e-1573
somite1.01e-1471
presomitic mesoderm1.01e-1471
presumptive segmental plate1.01e-1471
dermomyotome1.01e-1471
trunk paraxial mesoderm1.01e-1471
muscle tissue2.54e-1464
musculature2.54e-1464
musculature of body2.54e-1464
paraxial mesoderm3.34e-1472
presumptive paraxial mesoderm3.34e-1472
skeletal muscle tissue4.08e-1462
striated muscle tissue4.08e-1462
myotome4.08e-1462
trunk mesenchyme1.51e-12122
epithelial vesicle1.52e-1278
mesenchyme3.38e-12160
entire embryonic mesenchyme3.38e-12160
multilaminar epithelium5.17e-1283
surface structure1.39e-0999
integument2.99e-0846
integumental system2.99e-0846
unilaminar epithelium1.65e-07148
organism subdivision2.03e-07264
reproductive structure7.59e-0759
reproductive system7.59e-0759
splanchnic layer of lateral plate mesoderm8.60e-0783


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.