FFCP PHASE1:Hg19::chr13:113777105..113777170,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2159|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3528|TSSclassifier=S|UniProt=Q5JVE8,P00742,B7ZBK1,F8WBM7,Q5JVE7|association_with_transcript=0bp_to_ENST00000375551,ENST00000375559,ENST00000409306,ENST00000410083,ENST00000477269,ENST00000483537,NM_000504,uc001vsx.2,uc001vsy.2,uc001vsz.2,uc010agq.1_5end|coexpression_cluster_id=C5|description=CAGE_peak_1_at_F10_5end|id=chr13:113777105..113777170,+|ontology_enrichment_celltype=CL:0000057!5.18e-18!75;CL:0000055!2.69e-17!180;CL:0002620!8.87e-10!23;CL:0000183!1.37e-09!59;CL:0000680!3.32e-09!57;CL:0000056!3.32e-09!57;CL:0000355!3.32e-09!57;CL:0000187!1.72e-08!54;CL:0000393!1.33e-07!60;CL:0000211!1.33e-07!60;CL:0000192!8.71e-07!42;CL:0000514!8.71e-07!42|ontology_enrichment_celltype_v019=CL:0002620;2.13e-10;23!CL:0000057;2.25e-08;73|ontology_enrichment_celltype_v019_2=CL:0000057,9.97e-20,76;CL:0002620,1.84e-10,23;CL:0000136,2.38e-07,15;CL:0000680,2.82e-07,58;CL:0000056,2.82e-07,58;CL:0000355,2.82e-07,58|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000475!5.21e-23!365;UBERON:0000481!2.36e-19!347;UBERON:0005256!1.42e-15!143;UBERON:0000119!7.62e-14!312;UBERON:0007023!1.57e-13!115;UBERON:0000483!2.31e-13!309;UBERON:0000468!9.21e-13!659;UBERON:0002100!5.68e-12!216;UBERON:0002385!1.73e-11!63;UBERON:0001015!1.73e-11!63;UBERON:0000383!1.73e-11!63;UBERON:0000914!4.68e-11!83;UBERON:0002329!4.68e-11!83;UBERON:0003077!4.68e-11!83;UBERON:0003059!4.68e-11!83;UBERON:0007282!4.68e-11!83;UBERON:0009618!4.68e-11!83;UBERON:0007285!4.68e-11!83;UBERON:0003104!7.28e-11!238;UBERON:0009142!7.28e-11!238;UBERON:0001134!1.20e-10!61;UBERON:0002036!1.20e-10!61;UBERON:0003082!1.20e-10!61;UBERON:0004290!1.27e-10!70;UBERON:0000477!7.27e-10!286;UBERON:0000467!2.48e-09!625;UBERON:0002107!3.15e-09!19;UBERON:0006925!3.15e-09!19;UBERON:0008836!3.15e-09!19;UBERON:0000480!3.64e-09!626;UBERON:0000490!3.86e-09!138;UBERON:0000062!5.58e-09!511;UBERON:0004111!3.98e-08!241;UBERON:0009854!4.89e-08!23;UBERON:0000486!8.37e-08!82;UBERON:0008835!9.62e-08!22;UBERON:0003894!9.62e-08!22;UBERON:0003914!1.27e-07!118;UBERON:0000025!1.29e-07!194;UBERON:0003102!1.92e-07!95;UBERON:0005057!2.71e-07!26;UBERON:0009497!7.40e-07!25;UBERON:0000015!7.40e-07!25;UBERON:0002423!7.40e-07!25;UBERON:0006235!7.40e-07!25;UBERON:0004161!7.40e-07!25|ontology_enrichment_uberon_v019=UBERON:0002107;8.82e-10;19!UBERON:0006925;8.82e-10;19!UBERON:0000160;1.49e-07;17!UBERON:0002423;7.33e-07;25|ontology_enrichment_uberon_v019_2=UBERON:0005256,3.95e-14,122;UBERON:0003104,1.06e-13,160;UBERON:0009142,1.06e-13,160;UBERON:0007023,3.34e-10,114;UBERON:0002107,7.59e-10,19;UBERON:0006925,7.59e-10,19;UBERON:0008836,7.59e-10,19;UBERON:0002100,9.58e-10,199;UBERON:0002385,1.44e-09,64;UBERON:0001015,1.44e-09,64;UBERON:0000383,1.44e-09,64;UBERON:0003102,3.79e-09,99;UBERON:0007524,5.90e-09,73;UBERON:0001134,1.01e-08,62;UBERON:0002036,1.01e-08,62;UBERON:0003082,1.01e-08,62;UBERON:0003077,1.73e-08,72;UBERON:0007285,1.73e-08,72;UBERON:0002329,2.17e-08,71;UBERON:0003059,2.17e-08,71;UBERON:0007282,2.17e-08,71;UBERON:0004290,2.17e-08,71;UBERON:0009618,2.17e-08,71;UBERON:0000490,2.20e-08,148;UBERON:0000119,6.58e-08,309;UBERON:0009854,6.86e-08,23;UBERON:0007503,1.24e-07,78;UBERON:0001007,1.32e-07,145;UBERON:0001555,1.32e-07,145;UBERON:0007026,1.32e-07,145;UBERON:0000160,1.38e-07,17;UBERON:0008835,1.48e-07,22;UBERON:0003894,1.48e-07,22;UBERON:0000483,1.60e-07,306;UBERON:0002199,3.97e-07,46;UBERON:0002416,3.97e-07,46;UBERON:0004119,4.65e-07,160;UBERON:0000925,4.65e-07,160;UBERON:0006595,4.65e-07,160;UBERON:0004921,5.18e-07,118;UBERON:0009497,6.65e-07,25;UBERON:0000015,6.65e-07,25;UBERON:0002423,6.65e-07,25;UBERON:0006235,6.65e-07,25;UBERON:0004161,6.65e-07,25;UBERON:0009856,9.10e-07,26|phase1_expression=21.2563703746551,3.21150785836475,6.90676580070259,31.0227224894704,11.1740273606822,34.0212024399144,5.06599756336621,8.2123583545488,24.290263422585,1.47440361900905,1.39560233594486,0.873765488520689,2.90143676051299,0.37129905888014,0.331397375727916,2.6893005858071,2.41077811209591,2.19093027116212,0.975865597581014,0.861847406537515,0.816002764977012,0.940364164434263,0.85870796139317,0,1.25542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.3806866313962,11.4019146149618,9.84541726195184,0,0,0,0,0,3.97046232089085,2.66075276955077,4.21606971327005,14.4076983047484,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.225222960966644,0,0,0.183201743930407,0,0,0,6.46063537203914,2.78587125662075,4.76673050927588,31.2651916616207,5.67469411517371,5.04609840128076,1.06748995729705,0.74000264525148,7.15785381419462,1.21239604862719,0.3269238062269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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2159 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3528 | |||
|TSSclassifier=S | |||
|UniProt=Q5JVE8,P00742,B7ZBK1,F8WBM7,Q5JVE7 | |||
|association_with_transcript=0bp_to_ENST00000375551,ENST00000375559,ENST00000409306,ENST00000410083,ENST00000477269,ENST00000483537,NM_000504,uc001vsx.2,uc001vsy.2,uc001vsz.2,uc010agq.1_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_1_at_F10_5end | |||
|id=chr13:113777105..113777170,+ | |||
|ontology_enrichment_celltype=CL:0000057!5.18e-18!75;CL:0000055!2.69e-17!180;CL:0002620!8.87e-10!23;CL:0000183!1.37e-09!59;CL:0000680!3.32e-09!57;CL:0000056!3.32e-09!57;CL:0000355!3.32e-09!57;CL:0000187!1.72e-08!54;CL:0000393!1.33e-07!60;CL:0000211!1.33e-07!60;CL:0000192!8.71e-07!42;CL:0000514!8.71e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.13e-10;23!CL:0000057;2.25e-08;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.97e-20,76;CL:0002620,1.84e-10,23;CL:0000136,2.38e-07,15;CL:0000680,2.82e-07,58;CL:0000056,2.82e-07,58;CL:0000355,2.82e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!5.21e-23!365;UBERON:0000481!2.36e-19!347;UBERON:0005256!1.42e-15!143;UBERON:0000119!7.62e-14!312;UBERON:0007023!1.57e-13!115;UBERON:0000483!2.31e-13!309;UBERON:0000468!9.21e-13!659;UBERON:0002100!5.68e-12!216;UBERON:0002385!1.73e-11!63;UBERON:0001015!1.73e-11!63;UBERON:0000383!1.73e-11!63;UBERON:0000914!4.68e-11!83;UBERON:0002329!4.68e-11!83;UBERON:0003077!4.68e-11!83;UBERON:0003059!4.68e-11!83;UBERON:0007282!4.68e-11!83;UBERON:0009618!4.68e-11!83;UBERON:0007285!4.68e-11!83;UBERON:0003104!7.28e-11!238;UBERON:0009142!7.28e-11!238;UBERON:0001134!1.20e-10!61;UBERON:0002036!1.20e-10!61;UBERON:0003082!1.20e-10!61;UBERON:0004290!1.27e-10!70;UBERON:0000477!7.27e-10!286;UBERON:0000467!2.48e-09!625;UBERON:0002107!3.15e-09!19;UBERON:0006925!3.15e-09!19;UBERON:0008836!3.15e-09!19;UBERON:0000480!3.64e-09!626;UBERON:0000490!3.86e-09!138;UBERON:0000062!5.58e-09!511;UBERON:0004111!3.98e-08!241;UBERON:0009854!4.89e-08!23;UBERON:0000486!8.37e-08!82;UBERON:0008835!9.62e-08!22;UBERON:0003894!9.62e-08!22;UBERON:0003914!1.27e-07!118;UBERON:0000025!1.29e-07!194;UBERON:0003102!1.92e-07!95;UBERON:0005057!2.71e-07!26;UBERON:0009497!7.40e-07!25;UBERON:0000015!7.40e-07!25;UBERON:0002423!7.40e-07!25;UBERON:0006235!7.40e-07!25;UBERON:0004161!7.40e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;8.82e-10;19!UBERON:0006925;8.82e-10;19!UBERON:0000160;1.49e-07;17!UBERON:0002423;7.33e-07;25 | |||
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| |||
|short_description=p1@F10 | |||
}} |
Revision as of 01:35, 11 September 2013
Short description: | p1@F10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_F10_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000375551, ENST00000375559, ENST00000409306, ENST00000410083, ENST00000477269, ENST00000483537, NM_000504, uc001vsx.2, uc001vsy.2, uc001vsz.2, uc010agq.1_5end |
EntrezGene: | F10 |
HGNC: | 3528 |
UniProt: | Q5JVE8P00742B7ZBK1F8WBM7Q5JVE7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.97e-20 | 76 |
skin fibroblast | 1.84e-10 | 23 |
fat cell | 2.38e-07 | 15 |
muscle precursor cell | 2.82e-07 | 58 |
myoblast | 2.82e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.82e-07 | 58 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.