FFCP PHASE1:Hg19::chr17:66287486..66287533,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=22901|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24102|TSSclassifier=S|UniProt=Q96EG1|association_with_transcript=-125bp_to_uc002jhb.1_5end|description=CAGE_peak_3_at_ARSG_5end|id=chr17:66287486..66287533,+|ontology_enrichment_celltype=CL:0000738!3.24e-33!140;CL:0000766!9.84e-31!76;CL:0002087!1.31e-29!119;CL:0002009!1.09e-27!65;CL:0002194!1.39e-27!63;CL:0000576!1.39e-27!63;CL:0000040!1.39e-27!63;CL:0000559!1.39e-27!63;CL:0000860!2.02e-27!45;CL:0002057!1.17e-26!42;CL:0002031!1.40e-25!124;CL:0000557!9.48e-25!71;CL:0000839!1.00e-23!70;CL:0000988!2.13e-22!182;CL:0000037!3.82e-22!172;CL:0000566!3.82e-22!172;CL:0002032!9.59e-22!165;CL:0000837!9.59e-22!165;CL:0000763!1.49e-17!112;CL:0000049!1.49e-17!112;CL:0000094!8.65e-07!8|ontology_enrichment_celltype_v019=CL:0000860;6.09e-36;33!CL:0002057;6.09e-36;33!CL:0000473;4.24e-32;39!CL:0000234;4.24e-32;39!CL:0000576;1.24e-29;48!CL:0000766;5.19e-22;69!CL:0000094;4.38e-11;8!CL:0000763;1.03e-09;100!CL:0000081;4.68e-09;11!CL:0000738;2.16e-08;136!CL:0002087;2.55e-08;104!CL:0002393;2.66e-08;6!CL:0002397;2.66e-08;6|ontology_enrichment_celltype_v019_2=CL:0000766,1.08e-51,72;CL:0000473,7.91e-49,48;CL:0000234,7.91e-49,48;CL:0002194,3.93e-47,59;CL:0000576,3.93e-47,59;CL:0000040,3.93e-47,59;CL:0000559,3.93e-47,59;CL:0002009,8.53e-47,61;CL:0000860,1.96e-46,42;CL:0002057,1.96e-46,42;CL:0000557,6.51e-41,67;CL:0000839,3.68e-40,66;CL:0000738,4.56e-33,136;CL:0002087,5.27e-29,115;CL:0000763,1.64e-28,108;CL:0000049,1.64e-28,108;CL:0002031,1.83e-24,120;CL:0000988,4.18e-23,177;CL:0000037,3.84e-22,168;CL:0002032,2.19e-20,161;CL:0000837,2.19e-20,161;CL:0000094,2.87e-11,8;CL:0000081,4.06e-09,11;CL:0002393,2.05e-08,9;CL:0002397,2.05e-08,9|ontology_enrichment_development_v019=CL:0002057;2.04e-33;42!CL:0000049;7.88e-09;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!2.30e-28!102;UBERON:0003061!2.30e-28!102;UBERON:0002193!3.35e-26!112;UBERON:0002371!1.64e-20!80;UBERON:0001474!4.64e-20!86;UBERON:0004765!7.15e-16!101;UBERON:0001434!7.15e-16!101;UBERON:0002405!5.45e-15!115;UBERON:0000178!4.37e-09!15;UBERON:0000179!4.37e-09!15;UBERON:0000463!4.37e-09!15|ontology_enrichment_uberon_v019=UBERON:0000178;1.92e-12;15!UBERON:0000179;1.92e-12;15!UBERON:0000463;1.92e-12;15!UBERON:0001737;1.48e-10;9!UBERON:0001557;1.48e-10;9|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.51e-43,98;UBERON:0003061,2.51e-43,98;UBERON:0002193,2.63e-38,108;UBERON:0002371,2.17e-35,76;UBERON:0001474,2.91e-34,82;UBERON:0004765,1.10e-30,90;UBERON:0001434,5.90e-28,100;UBERON:0002405,1.18e-27,93;UBERON:0003081,7.35e-13,203;UBERON:0000178,1.79e-12,15;UBERON:0000179,1.79e-12,15;UBERON:0000463,1.79e-12,15;UBERON:0002204,2.29e-12,167;UBERON:0001737,1.54e-10,9|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0.697801167972428,0,0,0.123766352960047,0.994192127183747,0,0,0,0,0.369363174230364,0.816002764977012,0,0.572471974262113,0,0.251085279189606,0.382067028739756,0.164201178899891,0.472264687882075,4.32700704533794,1.91914699048606,5.57338043937874,0,0,0,0.232401601740905,0.853015394924529,0,4.9859586767869,8.62341124121609,6.07630438004385,2.68698569087909,2.91504299417082,5.15151135268373,15.703009788193,12.8477820854195,16.7383002219593,6.27558399645349,6.57868620834921,6.50383378879718,4.60307827715441,3.07392847834921,2.83778675866302,6.20542225325913,5.16387746867061,4.06279459783025,7.71793592124679,7.36846605156184,6.74170453335254,7.03992952453076,8.98601275813062,8.31138263538754,8.2462825046679,7.18069167437875,6.81959600852311,6.09439401120026,5.10646702222026,4.9825779919646,2.51248665256743,4.17186334736161,2.6062661364614,3.63239701580021,6.2607198117886,2.53169909952708,4.85887158517466,5.10250319916104,4.19317291016752,10.671219958917,9.4611442490149,10.9293398954014,0.855038231223746,1.59133341759272,2.00930569141097,0,0,0.889509253863555,0.853460445133014,0.400395987036012,0.574752439954483,1.32208974556972,0.954053754535364,0.569212969109448,0,0.382273228125229,0,1.12101712596307,0.263384084775077,0.786839080455332,1.57204305099666,0.616804496998528,1.17030546773475,1.62961133316795,0,1.94826728407911,0.668462741311041,2.06224135232386,0.664601683750863,1.89562704635511,1.28091319725675,0.650296737799391,0.493313713811028,0.829050053357545,0.869409257205157,1.03800594213442,1.07016331235885,0,0.906474741580529,0.383220493601921,0.34362744548263,0.506039384039006,0.318565414324097,0,0,0.451725357233318,0.895906278080929,2.49861453104692,0.710331756132051,0,0.403213486449465,1.06976078313403,0.434473211648397,2.43806866313962,0,0.12786256184353,0,0,0.144846518960824,0.795285947051099,0,0.378139268656271,0.443458794925128,1.05401742831751,0.261958150995425,0,0.370784442784429,1.62273696827342,2.78607579678828,2.52620124985844,0.238490624305342,0,0,0.39752481473341,0,0,0,0,0,0,0,0.35576626268671,0.33472061276467,0.402829317109147,0,0.732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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=22901 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24102 | |||
|TSSclassifier=S | |||
|UniProt=Q96EG1 | |||
|association_with_transcript=-125bp_to_uc002jhb.1_5end | |||
|description=CAGE_peak_3_at_ARSG_5end | |||
|id=chr17:66287486..66287533,+ | |||
|ontology_enrichment_celltype=CL:0000738!3.24e-33!140;CL:0000766!9.84e-31!76;CL:0002087!1.31e-29!119;CL:0002009!1.09e-27!65;CL:0002194!1.39e-27!63;CL:0000576!1.39e-27!63;CL:0000040!1.39e-27!63;CL:0000559!1.39e-27!63;CL:0000860!2.02e-27!45;CL:0002057!1.17e-26!42;CL:0002031!1.40e-25!124;CL:0000557!9.48e-25!71;CL:0000839!1.00e-23!70;CL:0000988!2.13e-22!182;CL:0000037!3.82e-22!172;CL:0000566!3.82e-22!172;CL:0002032!9.59e-22!165;CL:0000837!9.59e-22!165;CL:0000763!1.49e-17!112;CL:0000049!1.49e-17!112;CL:0000094!8.65e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.09e-36;33!CL:0002057;6.09e-36;33!CL:0000473;4.24e-32;39!CL:0000234;4.24e-32;39!CL:0000576;1.24e-29;48!CL:0000766;5.19e-22;69!CL:0000094;4.38e-11;8!CL:0000763;1.03e-09;100!CL:0000081;4.68e-09;11!CL:0000738;2.16e-08;136!CL:0002087;2.55e-08;104!CL:0002393;2.66e-08;6!CL:0002397;2.66e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.08e-51,72;CL:0000473,7.91e-49,48;CL:0000234,7.91e-49,48;CL:0002194,3.93e-47,59;CL:0000576,3.93e-47,59;CL:0000040,3.93e-47,59;CL:0000559,3.93e-47,59;CL:0002009,8.53e-47,61;CL:0000860,1.96e-46,42;CL:0002057,1.96e-46,42;CL:0000557,6.51e-41,67;CL:0000839,3.68e-40,66;CL:0000738,4.56e-33,136;CL:0002087,5.27e-29,115;CL:0000763,1.64e-28,108;CL:0000049,1.64e-28,108;CL:0002031,1.83e-24,120;CL:0000988,4.18e-23,177;CL:0000037,3.84e-22,168;CL:0002032,2.19e-20,161;CL:0000837,2.19e-20,161;CL:0000094,2.87e-11,8;CL:0000081,4.06e-09,11;CL:0002393,2.05e-08,9;CL:0002397,2.05e-08,9 | |||
|ontology_enrichment_development_v019=CL:0002057;2.04e-33;42!CL:0000049;7.88e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.30e-28!102;UBERON:0003061!2.30e-28!102;UBERON:0002193!3.35e-26!112;UBERON:0002371!1.64e-20!80;UBERON:0001474!4.64e-20!86;UBERON:0004765!7.15e-16!101;UBERON:0001434!7.15e-16!101;UBERON:0002405!5.45e-15!115;UBERON:0000178!4.37e-09!15;UBERON:0000179!4.37e-09!15;UBERON:0000463!4.37e-09!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.92e-12;15!UBERON:0000179;1.92e-12;15!UBERON:0000463;1.92e-12;15!UBERON:0001737;1.48e-10;9!UBERON:0001557;1.48e-10;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.51e-43,98;UBERON:0003061,2.51e-43,98;UBERON:0002193,2.63e-38,108;UBERON:0002371,2.17e-35,76;UBERON:0001474,2.91e-34,82;UBERON:0004765,1.10e-30,90;UBERON:0001434,5.90e-28,100;UBERON:0002405,1.18e-27,93;UBERON:0003081,7.35e-13,203;UBERON:0000178,1.79e-12,15;UBERON:0000179,1.79e-12,15;UBERON:0000463,1.79e-12,15;UBERON:0002204,2.29e-12,167;UBERON:0001737,1.54e-10,9 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0.697801167972428,0,0,0.123766352960047,0.994192127183747,0,0,0,0,0.369363174230364,0.816002764977012,0,0.572471974262113,0,0.251085279189606,0.382067028739756,0.164201178899891,0.472264687882075,4.32700704533794,1.91914699048606,5.57338043937874,0,0,0,0.232401601740905,0.853015394924529,0,4.9859586767869,8.62341124121609,6.07630438004385,2.68698569087909,2.91504299417082,5.15151135268373,15.703009788193,12.8477820854195,16.7383002219593,6.27558399645349,6.57868620834921,6.50383378879718,4.60307827715441,3.07392847834921,2.83778675866302,6.20542225325913,5.16387746867061,4.06279459783025,7.71793592124679,7.36846605156184,6.74170453335254,7.03992952453076,8.98601275813062,8.31138263538754,8.2462825046679,7.18069167437875,6.81959600852311,6.09439401120026,5.10646702222026,4.9825779919646,2.51248665256743,4.17186334736161,2.6062661364614,3.63239701580021,6.2607198117886,2.53169909952708,4.85887158517466,5.10250319916104,4.19317291016752,10.671219958917,9.4611442490149,10.9293398954014,0.855038231223746,1.59133341759272,2.00930569141097,0,0,0.889509253863555,0.853460445133014,0.400395987036012,0.574752439954483,1.32208974556972,0.954053754535364,0.569212969109448,0,0.382273228125229,0,1.12101712596307,0.263384084775077,0.786839080455332,1.57204305099666,0.616804496998528,1.17030546773475,1.62961133316795,0,1.94826728407911,0.668462741311041,2.06224135232386,0.664601683750863,1.89562704635511,1.28091319725675,0.650296737799391,0.493313713811028,0.829050053357545,0.869409257205157,1.03800594213442,1.07016331235885,0,0.906474741580529,0.383220493601921,0.34362744548263,0.506039384039006,0.318565414324097,0,0,0.451725357233318,0.895906278080929,2.49861453104692,0.710331756132051,0,0.403213486449465,1.06976078313403,0.434473211648397,2.43806866313962,0,0.12786256184353,0,0,0.144846518960824,0.795285947051099,0,0.378139268656271,0.443458794925128,1.05401742831751,0.261958150995425,0,0.370784442784429,1.62273696827342,2.78607579678828,2.52620124985844,0.238490624305342,0,0,0.39752481473341,0,0,0,0,0,0,0,0.35576626268671,0.33472061276467,0.402829317109147,0,0.732186172644509,0,0,0.446498641420399,0.898117490504679,0,0,0,0.183201743930407,15.8136500923276,27.1446184903828,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,1.51357427644931,1.72852777344,0.468642863667593,0.624320153660641,0,0.448346041655403,0.117434498643765,0,0,1.42907919878425,0.245668634623536,1.44656093646072,7.12801714369232,3.70900393917835,0,0,0.168336113954066,0.125118519871964,1.38532057742091,0,0,2.40380894250555,0.113432183160021,0,0,0.423863802319124,0.300091096084402,0.103052529238439,0,0.18611685633159,0,0,0,0.0920498986422993,0,0,0,0,0,0,0.286804595389004,0.243947412259191,0.265059536642971,0.116193942869518,0.207322110030741,0.756962552626885,1.82488679537915,3.12899064659632,0.643240938192885,1.38134921352481,0.464367928031979,0,2.48444280083672,3.87744787179634,3.37415441836875,4.19117096383097,4.35758888184812,5.69449485866632,4.31460186112526,3.72820783738158,3.46272441251751,0,0,0,0,0,0.982827216677626,0,3.09024169590255,0.122988438543114,1.3725424823882,0,0,0,0,0,1.03993478527958,0,0.34779121492523,0.70445216541493,0.288732895522148,0,0.570762456703795,7.11183958163348,3.43394464837949,1.23108503043699,1.17002132569619,0.743155811443641,0,0,0,0,0,0.383382679165211,0,0,0.829312462163088,0.288239906833923,0.25248486685276,2.41291998310242,10.6956759156318,12.8939191931052,5.13217338068116,12.2364716316955,3.90445975197093,12.0047101704843,0.672786506072164,0.43596006883328,0.1466765716419,0.258543431515556,0,0,0.531876233169741,0,0,0,0,0.285955987316295,0,0,0,0.355391948742546,0.791951872933429,0,0,0,3.64871341923571,2.00902836572851,2.10833939483032,0,1.14861935834114,0,0.144781306667579,1.02738161275192,0,0.672510863961164,0.985153801009636,1.50939302401662,1.28343036279748,0.254094624222463,0,0,0.167516265334349,0.637938751653163,17.9761685747324,14.9580729602012,31.9099945345747,0.12269149171914,0,1.35632511849868,0.207970861530807,0,0.157702415033935,0.585707074963566,0.300946099727719,0,0,0,0,0.695068915744663,6.2656370388077,3.77457766191941,3.92859249633486,3.8828556147351,2.98837161849644,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0.177561725313127,0.0821271560138091,0.519254429183621,0.232420756919918,0,0,0,0,0.546273504020151,0.131124414959424,0.451199612907412,0,0.784349769176855,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0.656029291399411,0.650756789328606,0.309123034943167,0,0.165018999841176,0,0,0,0,0,0.307007349452259,0,0,0,0.0852266274161009,0,0,0,0,0.10115778085555,0,0.94443704049192,0,0,0,0,0,0,1.86079184679834,1.89827654831236,0,0.511795582622668,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.409499734223957,0.141405431953713,0,0,0,0.438450885253763,0,0.655894752046633,0,0,0,0.143411352204052,0,0,0.709522128141196,0,0,0.379473173765715,0,0.0962221127255121,0,0,0.188287601553558,0,0,0,0,5.07447609232169,7.64637207142375,10.8232965563091,3.81170840732462,5.347709550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| |||
|short_description=p3@ARSG | |||
}} |
Revision as of 15:13, 11 September 2013
Short description: | p3@ARSG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_ARSG_5end |
Coexpression cluster: | NA |
Association with transcript: | -125bp_to_uc002jhb.1_5end |
EntrezGene: | ARSG |
HGNC: | 24102 |
UniProt: | Q96EG1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.08e-51 | 72 |
defensive cell | 7.91e-49 | 48 |
phagocyte | 7.91e-49 | 48 |
monopoietic cell | 3.93e-47 | 59 |
monocyte | 3.93e-47 | 59 |
monoblast | 3.93e-47 | 59 |
promonocyte | 3.93e-47 | 59 |
macrophage dendritic cell progenitor | 8.53e-47 | 61 |
classical monocyte | 1.96e-46 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.96e-46 | 42 |
granulocyte monocyte progenitor cell | 6.51e-41 | 67 |
myeloid lineage restricted progenitor cell | 3.68e-40 | 66 |
leukocyte | 4.56e-33 | 136 |
nongranular leukocyte | 5.27e-29 | 115 |
myeloid cell | 1.64e-28 | 108 |
common myeloid progenitor | 1.64e-28 | 108 |
hematopoietic lineage restricted progenitor cell | 1.83e-24 | 120 |
hematopoietic cell | 4.18e-23 | 177 |
hematopoietic stem cell | 3.84e-22 | 168 |
hematopoietic oligopotent progenitor cell | 2.19e-20 | 161 |
hematopoietic multipotent progenitor cell | 2.19e-20 | 161 |
granulocyte | 2.87e-11 | 8 |
blood cell | 4.06e-09 | 11 |
intermediate monocyte | 2.05e-08 | 9 |
CD14-positive, CD16-positive monocyte | 2.05e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.51e-43 | 98 |
blood island | 2.51e-43 | 98 |
hemolymphoid system | 2.63e-38 | 108 |
bone marrow | 2.17e-35 | 76 |
bone element | 2.91e-34 | 82 |
skeletal element | 1.10e-30 | 90 |
skeletal system | 5.90e-28 | 100 |
immune system | 1.18e-27 | 93 |
lateral plate mesoderm | 7.35e-13 | 203 |
blood | 1.79e-12 | 15 |
haemolymphatic fluid | 1.79e-12 | 15 |
organism substance | 1.79e-12 | 15 |
musculoskeletal system | 2.29e-12 | 167 |
larynx | 1.54e-10 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.