FFCP PHASE1:Hg19::chr19:496478..496490,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8174|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6765|TSSclassifier=S|UniProt=Q13477,B2RPL9,Q5UGI7|association_with_transcript=0bp_to_ENST00000215637,ENST00000346144,NM_130760,NM_130762,uc002los.2,uc002lot.2,uc010drq.2_5end|coexpression_cluster_id=C253|description=CAGE_peak_3_at_MADCAM1_5end|id=chr19:496478..496490,+|ontology_enrichment_celltype=CL:0002322!7.42e-09!5|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0004872;4.40e-10;7!UBERON:0001045;6.50e-09;1!UBERON:0006242;8.14e-09;1!UBERON:0004140;1.65e-08;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!6.09e-27!115;UBERON:0002619!4.71e-19!22;UBERON:0001950!2.76e-18!20;UBERON:0000956!1.83e-16!25;UBERON:0000203!1.83e-16!25;UBERON:0001869!2.54e-16!32;UBERON:0001893!3.65e-15!34;UBERON:0002791!9.12e-14!33;UBERON:0002780!1.02e-13!41;UBERON:0001890!1.02e-13!41;UBERON:0006240!1.02e-13!41;UBERON:0003080!2.65e-13!42;UBERON:0002020!2.85e-13!34;UBERON:0003528!2.85e-13!34;UBERON:0001049!2.29e-11!57;UBERON:0005068!2.29e-11!57;UBERON:0006241!2.29e-11!57;UBERON:0007135!2.29e-11!57;UBERON:0005409!1.30e-09!35;UBERON:0000481!1.57e-09!347;UBERON:0002616!1.57e-09!59;UBERON:0004921!4.68e-09!129;UBERON:0004185!4.68e-09!129;UBERON:0001007!9.41e-09!155;UBERON:0001555!9.41e-09!155;UBERON:0007026!9.41e-09!155;UBERON:0002021!1.20e-08!5;UBERON:0000955!1.84e-08!69;UBERON:0006238!1.84e-08!69;UBERON:0001017!2.65e-08!82;UBERON:0001871!3.22e-08!7;UBERON:0004119!3.94e-08!169;UBERON:0000925!3.94e-08!169;UBERON:0006595!3.94e-08!169;UBERON:0003056!5.15e-08!61;UBERON:0005743!1.04e-07!86;UBERON:0000153!1.04e-07!129;UBERON:0007811!1.04e-07!129;UBERON:0000160!3.44e-07!27;UBERON:0000200!4.71e-07!6;UBERON:0000064!5.43e-07!219;UBERON:0004177!7.89e-07!7;UBERON:0000059!8.00e-07!11;UBERON:0003127!9.08e-07!2|ontology_enrichment_uberon_v019=UBERON:0000160;5.76e-25;17!UBERON:0005409;1.99e-24;22!UBERON:0000922;5.91e-24;49!UBERON:0000059;1.47e-16;11!UBERON:0004921;4.82e-15;33!UBERON:0002108;7.73e-14;4!UBERON:0004177;8.99e-14;5!UBERON:0005057;8.99e-14;5!UBERON:0001155;3.22e-13;9!UBERON:0002106;5.31e-11;3!UBERON:0001154;6.50e-09;1!UBERON:0001153;6.50e-09;1!UBERON:0009854;6.50e-09;1!UBERON:0001007;8.38e-09;81!UBERON:0007029;1.37e-08;1!UBERON:0005795;1.65e-08;1!UBERON:0000029;1.65e-08;1!UBERON:0001555;3.81e-07;54!UBERON:0004907;6.29e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0005409,2.50e-32,25;UBERON:0000160,5.16e-25,17;UBERON:0000059,1.25e-16,11;UBERON:0002108,8.25e-14,4;UBERON:0001155,2.75e-13,9;UBERON:0001007,1.56e-12,145;UBERON:0001555,1.56e-12,145;UBERON:0007026,1.56e-12,145;UBERON:0004921,1.97e-12,118;UBERON:0004119,4.83e-11,160;UBERON:0000925,4.83e-11,160;UBERON:0006595,4.83e-11,160;UBERON:0002106,5.32e-11,3;UBERON:0004854,5.32e-11,3;UBERON:0009034,5.32e-11,3;UBERON:0002095,5.32e-11,3;UBERON:0004782,5.32e-11,3;UBERON:0003281,5.32e-11,3;UBERON:0009664,5.32e-11,3;UBERON:0002296,5.32e-11,3;UBERON:0005602,5.32e-11,3;UBERON:0001179,5.32e-11,3;UBERON:0006293,5.32e-11,3;UBERON:0004177,4.90e-10,7;UBERON:0005057,4.90e-10,7;UBERON:0000945,5.74e-09,8;UBERON:0010039,5.74e-09,8;UBERON:0001154,6.50e-09,1;UBERON:0001153,6.50e-09,1;UBERON:0001045,6.50e-09,1;UBERON:0007029,1.37e-08,1;UBERON:0000029,1.48e-08,1;UBERON:0004907,6.30e-07,5;UBERON:0011216,8.01e-07,223|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.609868530647977,0.265059536642971,0.580969714347592,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,28.1809593841771,0,0,0,0,0,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.97157158647103,1.94606641907346,23.2191455074778,0,0,0,0,0,0,0,0,0,0,6.04953580243319,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387956065953678,0,0.225980740780532,0,0,0.443175571691151,0,0,19.2107695265417,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=8174 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6765 | |||
|TSSclassifier=S | |||
|UniProt=Q13477,B2RPL9,Q5UGI7 | |||
|association_with_transcript=0bp_to_ENST00000215637,ENST00000346144,NM_130760,NM_130762,uc002los.2,uc002lot.2,uc010drq.2_5end | |||
|coexpression_cluster_id=C253 | |||
|description=CAGE_peak_3_at_MADCAM1_5end | |||
|id=chr19:496478..496490,+ | |||
|ontology_enrichment_celltype=CL:0002322!7.42e-09!5 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0004872;4.40e-10;7!UBERON:0001045;6.50e-09;1!UBERON:0006242;8.14e-09;1!UBERON:0004140;1.65e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.09e-27!115;UBERON:0002619!4.71e-19!22;UBERON:0001950!2.76e-18!20;UBERON:0000956!1.83e-16!25;UBERON:0000203!1.83e-16!25;UBERON:0001869!2.54e-16!32;UBERON:0001893!3.65e-15!34;UBERON:0002791!9.12e-14!33;UBERON:0002780!1.02e-13!41;UBERON:0001890!1.02e-13!41;UBERON:0006240!1.02e-13!41;UBERON:0003080!2.65e-13!42;UBERON:0002020!2.85e-13!34;UBERON:0003528!2.85e-13!34;UBERON:0001049!2.29e-11!57;UBERON:0005068!2.29e-11!57;UBERON:0006241!2.29e-11!57;UBERON:0007135!2.29e-11!57;UBERON:0005409!1.30e-09!35;UBERON:0000481!1.57e-09!347;UBERON:0002616!1.57e-09!59;UBERON:0004921!4.68e-09!129;UBERON:0004185!4.68e-09!129;UBERON:0001007!9.41e-09!155;UBERON:0001555!9.41e-09!155;UBERON:0007026!9.41e-09!155;UBERON:0002021!1.20e-08!5;UBERON:0000955!1.84e-08!69;UBERON:0006238!1.84e-08!69;UBERON:0001017!2.65e-08!82;UBERON:0001871!3.22e-08!7;UBERON:0004119!3.94e-08!169;UBERON:0000925!3.94e-08!169;UBERON:0006595!3.94e-08!169;UBERON:0003056!5.15e-08!61;UBERON:0005743!1.04e-07!86;UBERON:0000153!1.04e-07!129;UBERON:0007811!1.04e-07!129;UBERON:0000160!3.44e-07!27;UBERON:0000200!4.71e-07!6;UBERON:0000064!5.43e-07!219;UBERON:0004177!7.89e-07!7;UBERON:0000059!8.00e-07!11;UBERON:0003127!9.08e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;5.76e-25;17!UBERON:0005409;1.99e-24;22!UBERON:0000922;5.91e-24;49!UBERON:0000059;1.47e-16;11!UBERON:0004921;4.82e-15;33!UBERON:0002108;7.73e-14;4!UBERON:0004177;8.99e-14;5!UBERON:0005057;8.99e-14;5!UBERON:0001155;3.22e-13;9!UBERON:0002106;5.31e-11;3!UBERON:0001154;6.50e-09;1!UBERON:0001153;6.50e-09;1!UBERON:0009854;6.50e-09;1!UBERON:0001007;8.38e-09;81!UBERON:0007029;1.37e-08;1!UBERON:0005795;1.65e-08;1!UBERON:0000029;1.65e-08;1!UBERON:0001555;3.81e-07;54!UBERON:0004907;6.29e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,2.50e-32,25;UBERON:0000160,5.16e-25,17;UBERON:0000059,1.25e-16,11;UBERON:0002108,8.25e-14,4;UBERON:0001155,2.75e-13,9;UBERON:0001007,1.56e-12,145;UBERON:0001555,1.56e-12,145;UBERON:0007026,1.56e-12,145;UBERON:0004921,1.97e-12,118;UBERON:0004119,4.83e-11,160;UBERON:0000925,4.83e-11,160;UBERON:0006595,4.83e-11,160;UBERON:0002106,5.32e-11,3;UBERON:0004854,5.32e-11,3;UBERON:0009034,5.32e-11,3;UBERON:0002095,5.32e-11,3;UBERON:0004782,5.32e-11,3;UBERON:0003281,5.32e-11,3;UBERON:0009664,5.32e-11,3;UBERON:0002296,5.32e-11,3;UBERON:0005602,5.32e-11,3;UBERON:0001179,5.32e-11,3;UBERON:0006293,5.32e-11,3;UBERON:0004177,4.90e-10,7;UBERON:0005057,4.90e-10,7;UBERON:0000945,5.74e-09,8;UBERON:0010039,5.74e-09,8;UBERON:0001154,6.50e-09,1;UBERON:0001153,6.50e-09,1;UBERON:0001045,6.50e-09,1;UBERON:0007029,1.37e-08,1;UBERON:0000029,1.48e-08,1;UBERON:0004907,6.30e-07,5;UBERON:0011216,8.01e-07,223 | |||
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|short_description=p3@MADCAM1 | |||
}} |
Revision as of 21:44, 11 September 2013
Short description: | p3@MADCAM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_MADCAM1_5end |
Coexpression cluster: | C253_spleen_rhabdomyosarcoma_Hepatocyte_small_uterus_liver_rectum |
Association with transcript: | 0bp_to_ENST00000215637, ENST00000346144, NM_130760, NM_130762, uc002los.2, uc002lot.2, uc010drq.2_5end |
EntrezGene: | MADCAM1 |
HGNC: | 6765 |
UniProt: | Q13477B2RPL9Q5UGI7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 2.50e-32 | 25 |
intestine | 5.16e-25 | 17 |
large intestine | 1.25e-16 | 11 |
small intestine | 8.25e-14 | 4 |
colon | 2.75e-13 | 9 |
digestive system | 1.56e-12 | 145 |
digestive tract | 1.56e-12 | 145 |
primitive gut | 1.56e-12 | 145 |
subdivision of digestive tract | 1.97e-12 | 118 |
endoderm-derived structure | 4.83e-11 | 160 |
endoderm | 4.83e-11 | 160 |
presumptive endoderm | 4.83e-11 | 160 |
spleen | 5.32e-11 | 3 |
gastrointestinal system mesentery | 5.32e-11 | 3 |
stomach region | 5.32e-11 | 3 |
mesentery | 5.32e-11 | 3 |
gastrointestinal system serosa | 5.32e-11 | 3 |
mesentery of stomach | 5.32e-11 | 3 |
gut mesentery | 5.32e-11 | 3 |
dorsal mesentery | 5.32e-11 | 3 |
dorsal mesogastrium | 5.32e-11 | 3 |
peritoneal cavity | 5.32e-11 | 3 |
spleen primordium | 5.32e-11 | 3 |
hemopoietic organ | 4.90e-10 | 7 |
immune organ | 4.90e-10 | 7 |
stomach | 5.74e-09 | 8 |
food storage organ | 5.74e-09 | 8 |
vermiform appendix | 6.50e-09 | 1 |
caecum | 6.50e-09 | 1 |
midgut | 6.50e-09 | 1 |
surface | 1.37e-08 | 1 |
lymph node | 1.48e-08 | 1 |
lower digestive tract | 6.30e-07 | 5 |
organ system subdivision | 8.01e-07 | 223 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.