FFCP PHASE1:Hg19::chr1:185014647..185014700,+: Difference between revisions
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{{FFCP | 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419332,10.3993445844564,35.2082707990665,15.4993481694734,15.3229307463046,16.0172176719101,6.71421637053334,19.2843950610222,18.0331063538149,17.5754442576591,35.0703050338649,15.72618789965,12.0510096267358,69.9371487134537,23.4238594449514,39.6637891761003,13.3561827274436,17.1918604102732,29.6211176865624,12.3436580291739,5.8186640697108,12.5246988938096,35.4241440813962,15.6441181876008,29.9469891791502,119.734055705316,7.46898326613553,14.048381169971,21.4154130388732,12.7592034051333,4.60081921056187,13.2068590935609,10.3973099535304,7.62764190934334,11.0457588169616,23.2731979876041,16.3958515801381,12.5057142596182,10.1596821460302,12.5715213351083,10.153858885626,18.4820107771307,13.9127424313893,15.6215619722769,15.2948229410876,11.4148458349032,93.5326923421155,22.4785684411445,15.8787577084574,15.1249270149274,13.4150549021575,21.9637752710098,34.30093966632,49.7711795474038,40.0685456778284,24.570556535051,12.0995686933568,12.1756486700567,11.2150059411772,8.61623333673323,9.69189495248539,5.00541308514311,14.3642359916441,13.8261719126082,13.4530638390619,36.5263488203798,9.93266919605658,6.21077194253165,12.2939655983849,19.7517014665908,10.1130040070269,31.1206307421617,8.81882501203278,8.08143040235844,5.29227278991245,8.2951159417691,9.89522925286638,15.0281640927818,16.4461871185174,29.637093513365,21.7651525116848,17.0613512115376,11.4664672677292,14.0937844065218,2.65005630761156,5.48630662420212,12.30114790657,10.4716062993372,40.593505096837,46.1425443406183,12.8666704904158,13.7276034861344,17.4812533443026,21.9115399155582,36.390311042737,15.3982100438007,6.17393264863557,21.8559560503957,18.3423745580994,13.2380093747109,12.7265335434878,17.0788366390002,15.1493664166814,27.8952780205044,11.5550437987715,17.1050730723334,9.73314108401015,14.5914087650396,10.5346823777338,6.70500256259814,4.25279243452592,20.4494188709025,27.0650277208679,10.7504687363588,22.245790269239,7.27508945042787,88.1428394487562,22.7481541421622,11.1598505450025,10.6300394585226,6.92202499398063,54.2515626790839,42.2857763499502,39.9100278186027,72.820024435775,43.8236544635519,82.8891993804301,81.7306578093143,18.4900023652504,17.1497043299954,25.7042526232222,11.894794524118,17.6984204977814,29.0438606385763,12.9823708770372,13.4081382879053,11.6617137083838,11.1382526986789,23.4455939191534,9.79725365536326,29.7742971944195,9.36193536902767,11.4038306574355,21.2902628189449,17.0132831396937,7.36418686556237,7.7228912914776,16.0787111770791,16.4248659682418,12.7131101950181,33.3654866218906,13.9808922578958,14.2904393449629,9.93762326140022|short_description=p1@RNF2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=6045 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10061 | |||
|TSSclassifier=S | |||
|UniProt=B3KRH1 | |||
|association_with_transcript=0bp_to_ENST00000367509,ENST00000498201_5end | |||
|description=CAGE_peak_1_at_RNF2_5end | |||
|id=chr1:185014647..185014700,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.28e-24!172;CL:0000566!1.28e-24!172;CL:0000763!3.82e-24!112;CL:0000049!3.82e-24!112;CL:0002032!5.96e-24!165;CL:0000837!5.96e-24!165;CL:0002057!2.52e-23!42;CL:0000738!1.26e-21!140;CL:0000766!1.77e-20!76;CL:0000860!2.88e-20!45;CL:0000988!3.62e-20!182;CL:0000839!2.03e-18!70;CL:0000557!1.08e-17!71;CL:0002031!2.13e-17!124;CL:0002009!8.66e-17!65;CL:0002194!2.36e-16!63;CL:0000576!2.36e-16!63;CL:0000040!2.36e-16!63;CL:0000559!2.36e-16!63;CL:0002087!4.62e-16!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.68e-19;33!CL:0002057;4.68e-19;33!CL:0000473;5.10e-16;39!CL:0000234;5.10e-16;39!CL:0000576;6.94e-14;48!CL:0000766;1.14e-11;69!CL:0000763;5.96e-09;100!CL:0002087;3.19e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,1.58e-26,108;CL:0000049,1.58e-26,108;CL:0000037,1.95e-26,168;CL:0002032,8.77e-26,161;CL:0000837,8.77e-26,161;CL:0000738,1.57e-23,136;CL:0000473,1.85e-23,48;CL:0000234,1.85e-23,48;CL:0000860,2.52e-23,42;CL:0002057,2.52e-23,42;CL:0000766,2.85e-23,72;CL:0000988,2.78e-22,177;CL:0000839,3.62e-21,66;CL:0000557,2.44e-20,67;CL:0002009,1.67e-19,61;CL:0002031,3.53e-19,120;CL:0002194,4.45e-19,59;CL:0000576,4.45e-19,59;CL:0000040,4.45e-19,59;CL:0000559,4.45e-19,59;CL:0002087,8.53e-18,115 | |||
|ontology_enrichment_development_v019=CL:0002057;3.92e-17;42!CL:0000049;9.26e-08;108 | |||
|ontology_enrichment_disease=DOID:3095!2.96e-07!22;DOID:2994!2.96e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.89e-07;22!DOID:2994;2.89e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.96e-07,22;DOID:2994,2.96e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.31e-14!102;UBERON:0003061!1.31e-14!102;UBERON:0002371!2.72e-13!80;UBERON:0001474!8.18e-13!86;UBERON:0002193!6.92e-12!112;UBERON:0000073!2.26e-10!94;UBERON:0001016!2.26e-10!94;UBERON:0004765!2.37e-09!101;UBERON:0001434!2.37e-09!101;UBERON:0001017!3.44e-09!82;UBERON:0007023!4.70e-09!115;UBERON:0005743!1.03e-08!86;UBERON:0002405!1.88e-07!115;UBERON:0003080!4.56e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;8.11e-09;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.07e-16,98;UBERON:0003061,2.07e-16,98;UBERON:0002371,2.79e-15,76;UBERON:0001474,1.17e-14,82;UBERON:0002193,2.31e-13,108;UBERON:0004765,1.16e-12,90;UBERON:0002405,1.37e-11,93;UBERON:0001016,1.59e-10,89;UBERON:0001434,3.55e-10,100;UBERON:0007023,5.78e-09,114;UBERON:0001017,7.61e-09,81 | |||
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| |||
|short_description=p1@RNF2 | |||
}} | |||
Revision as of 02:18, 12 September 2013
| Short description: | p1@RNF2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_RNF2_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENST00000367509, ENST00000498201_5end |
| EntrezGene: | RNF2 |
| HGNC: | 10061 |
| UniProt: | B3KRH1 |
| Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| myeloid cell | 1.58e-26 | 108 |
| common myeloid progenitor | 1.58e-26 | 108 |
| hematopoietic stem cell | 1.95e-26 | 168 |
| hematopoietic oligopotent progenitor cell | 8.77e-26 | 161 |
| hematopoietic multipotent progenitor cell | 8.77e-26 | 161 |
| leukocyte | 1.57e-23 | 136 |
| defensive cell | 1.85e-23 | 48 |
| phagocyte | 1.85e-23 | 48 |
| classical monocyte | 2.52e-23 | 42 |
| CD14-positive, CD16-negative classical monocyte | 2.52e-23 | 42 |
| myeloid leukocyte | 2.85e-23 | 72 |
| hematopoietic cell | 2.78e-22 | 177 |
| myeloid lineage restricted progenitor cell | 3.62e-21 | 66 |
| granulocyte monocyte progenitor cell | 2.44e-20 | 67 |
| macrophage dendritic cell progenitor | 1.67e-19 | 61 |
| hematopoietic lineage restricted progenitor cell | 3.53e-19 | 120 |
| monopoietic cell | 4.45e-19 | 59 |
| monocyte | 4.45e-19 | 59 |
| monoblast | 4.45e-19 | 59 |
| promonocyte | 4.45e-19 | 59 |
| nongranular leukocyte | 8.53e-18 | 115 |
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic system | 2.07e-16 | 98 |
| blood island | 2.07e-16 | 98 |
| bone marrow | 2.79e-15 | 76 |
| bone element | 1.17e-14 | 82 |
| hemolymphoid system | 2.31e-13 | 108 |
| skeletal element | 1.16e-12 | 90 |
| immune system | 1.37e-11 | 93 |
| nervous system | 1.59e-10 | 89 |
| skeletal system | 3.55e-10 | 100 |
| adult organism | 5.78e-09 | 114 |
| central nervous system | 7.61e-09 | 81 |
| Ontology term | p-value | n |
|---|---|---|
| germ cell and embryonal cancer | 2.96e-07 | 22 |
| germ cell cancer | 2.96e-07 | 22 |
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