FFCP PHASE1:Hg19::chr20:36531379..36531393,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=128434|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16096|TSSclassifier=S|UniProt=F2Z3I3,Q96N03|association_with_transcript=-105bp_to_ENST00000373458,NM_080607,uc002xhk.3_5end|coexpression_cluster_id=C2617|description=CAGE_peak_4_at_VSTM2L_5end|id=chr20:36531379..36531393,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000064;2.51e-09;3!CL:0000067;2.51e-09;3!CL:0005012;2.51e-09;3!CL:0002304;2.51e-09;3!CL:0002603;3.68e-09;3!CL:0000349;9.05e-08;19!CL:0002536;4.81e-07;2!CL:0002368;9.39e-07;13|ontology_enrichment_celltype_v019_2=CL:0000064,2.86e-09,3;CL:0000067,2.86e-09,3;CL:0005012,2.86e-09,3;CL:0002304,2.86e-09,3;CL:0002603,4.91e-09,3;CL:0000349,1.20e-07,19;CL:0002536,4.76e-07,2;CL:0002368,8.04e-07,13|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000119!6.35e-15!312;UBERON:0002346!1.00e-14!90;UBERON:0000483!3.59e-14!309;UBERON:0000924!5.26e-13!173;UBERON:0006601!5.26e-13!173;UBERON:0000064!7.12e-13!219;UBERON:0003075!7.19e-13!86;UBERON:0007284!7.19e-13!86;UBERON:0000475!9.95e-13!365;UBERON:0007023!2.10e-12!115;UBERON:0000481!6.49e-12!347;UBERON:0004121!1.56e-11!169;UBERON:0000468!2.01e-11!659;UBERON:0001049!6.00e-11!57;UBERON:0005068!6.00e-11!57;UBERON:0006241!6.00e-11!57;UBERON:0007135!6.00e-11!57;UBERON:0000480!1.37e-10!626;UBERON:0001017!2.32e-10!82;UBERON:0002616!2.60e-10!59;UBERON:0000922!2.93e-10!612;UBERON:0000062!3.22e-10!511;UBERON:0000467!3.41e-10!625;UBERON:0000923!4.54e-10!604;UBERON:0005291!4.54e-10!604;UBERON:0006598!4.54e-10!604;UBERON:0002532!4.54e-10!604;UBERON:0002050!5.88e-10!605;UBERON:0005423!5.88e-10!605;UBERON:0005743!7.81e-10!86;UBERON:0000955!1.14e-09!69;UBERON:0006238!1.14e-09!69;UBERON:0000153!3.88e-09!129;UBERON:0007811!3.88e-09!129;UBERON:0000033!1.43e-08!123;UBERON:0000073!1.52e-08!94;UBERON:0001016!1.52e-08!94;UBERON:0003056!2.61e-08!61;UBERON:0005631!1.09e-07!14;UBERON:0000158!1.09e-07!14;UBERON:0002780!1.13e-07!41;UBERON:0001890!1.13e-07!41;UBERON:0006240!1.13e-07!41;UBERON:0001869!1.86e-07!32;UBERON:0000477!2.02e-07!286;UBERON:0004111!2.44e-07!241;UBERON:0002020!2.54e-07!34;UBERON:0003528!2.54e-07!34;UBERON:0003080!2.62e-07!42;UBERON:0001893!3.30e-07!34;UBERON:0000025!7.63e-07!194|ontology_enrichment_uberon_v019=UBERON:0000488;2.28e-11;4!UBERON:0002037;5.56e-11;6!UBERON:0000305;6.16e-10;7!UBERON:0005631;2.35e-09;10!UBERON:0000158;2.35e-09;10!UBERON:0001778;2.51e-09;3!UBERON:0001775;2.51e-09;3!UBERON:0007625;2.56e-08;11!UBERON:0002203;1.47e-07;6!UBERON:0001768;1.47e-07;6!UBERON:0002200;1.47e-07;6!UBERON:0002680;3.47e-07;9!UBERON:0001895;3.47e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0000488,2.09e-11,4;UBERON:0005631,6.79e-11,14;UBERON:0000158,6.79e-11,14;UBERON:0002037,7.62e-11,6;UBERON:0006215,7.62e-11,6;UBERON:0004121,1.03e-10,171;UBERON:0000924,1.03e-10,171;UBERON:0006601,1.03e-10,171;UBERON:0010371,1.55e-10,104;UBERON:0000305,9.94e-10,7;UBERON:0002346,1.39e-09,86;UBERON:0001778,2.86e-09,3;UBERON:0001775,2.86e-09,3;UBERON:0003075,3.18e-09,82;UBERON:0007284,3.18e-09,82;UBERON:0004871,1.86e-08,8;UBERON:0007625,2.16e-08,11;UBERON:0005085,6.55e-08,31;UBERON:0001048,9.73e-08,160;UBERON:0002203,1.39e-07,6;UBERON:0001768,1.39e-07,6;UBERON:0002200,1.39e-07,6;UBERON:0002680,4.25e-07,9;UBERON:0001895,4.25e-07,9;UBERON:0010092,4.25e-07,9|phase1_expression=0.181678379270557,0.428201047781966,0.140954404095971,0,0,0,0,0,0,1.96587149201207,9.76921635161399,6.77168253603534,8.44054330331051,0,0,0.672325146451775,0,1.46062018077475,0,2.21617904538218,3.06001036866379,5.32873026512749,0.286235987131057,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.11964896641424,3.1042115644759,5.88493064143945,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0.886413581652058,0,0,0,0.560677600142307,0,0.49333509683432,0.311211035399766,0,0,0.756787138224657,0,0,0,0.570471821544449,0,0.352303495931295,0.323745888736263,0.561803226808994,0,0,0,0,0,0.910161361938026,0,0,0.125118519871964,0,0,0,0,0.113432183160021,0,0,0.211931901159562,0,0,0.257640540045629,0.18611685633159,0,0.0974370051611986,0,0,0,0,0,0,0.193260853163297,0,0.286804595389004,0,0.132529768321485,0,0.207322110030741,0,0,1.56449532329816,0,0,1.85747171212792,3.60939740834793,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,0,0.982827216677626,0.590789906681404,0,0.614942192715568,1.54411029268673,0.219500570817251,0,0,0.185176890317059,0,0,1.44331342025273,0.231860809950154,3.99189560401794,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0.895585227028483,1.16253575405585,0.383382679165211,0,0,0,0.144119953416961,0.5049697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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=128434 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16096 | |||
|TSSclassifier=S | |||
|UniProt=F2Z3I3,Q96N03 | |||
|association_with_transcript=-105bp_to_ENST00000373458,NM_080607,uc002xhk.3_5end | |||
|coexpression_cluster_id=C2617 | |||
|description=CAGE_peak_4_at_VSTM2L_5end | |||
|id=chr20:36531379..36531393,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000064;2.51e-09;3!CL:0000067;2.51e-09;3!CL:0005012;2.51e-09;3!CL:0002304;2.51e-09;3!CL:0002603;3.68e-09;3!CL:0000349;9.05e-08;19!CL:0002536;4.81e-07;2!CL:0002368;9.39e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,2.86e-09,3;CL:0000067,2.86e-09,3;CL:0005012,2.86e-09,3;CL:0002304,2.86e-09,3;CL:0002603,4.91e-09,3;CL:0000349,1.20e-07,19;CL:0002536,4.76e-07,2;CL:0002368,8.04e-07,13 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!6.35e-15!312;UBERON:0002346!1.00e-14!90;UBERON:0000483!3.59e-14!309;UBERON:0000924!5.26e-13!173;UBERON:0006601!5.26e-13!173;UBERON:0000064!7.12e-13!219;UBERON:0003075!7.19e-13!86;UBERON:0007284!7.19e-13!86;UBERON:0000475!9.95e-13!365;UBERON:0007023!2.10e-12!115;UBERON:0000481!6.49e-12!347;UBERON:0004121!1.56e-11!169;UBERON:0000468!2.01e-11!659;UBERON:0001049!6.00e-11!57;UBERON:0005068!6.00e-11!57;UBERON:0006241!6.00e-11!57;UBERON:0007135!6.00e-11!57;UBERON:0000480!1.37e-10!626;UBERON:0001017!2.32e-10!82;UBERON:0002616!2.60e-10!59;UBERON:0000922!2.93e-10!612;UBERON:0000062!3.22e-10!511;UBERON:0000467!3.41e-10!625;UBERON:0000923!4.54e-10!604;UBERON:0005291!4.54e-10!604;UBERON:0006598!4.54e-10!604;UBERON:0002532!4.54e-10!604;UBERON:0002050!5.88e-10!605;UBERON:0005423!5.88e-10!605;UBERON:0005743!7.81e-10!86;UBERON:0000955!1.14e-09!69;UBERON:0006238!1.14e-09!69;UBERON:0000153!3.88e-09!129;UBERON:0007811!3.88e-09!129;UBERON:0000033!1.43e-08!123;UBERON:0000073!1.52e-08!94;UBERON:0001016!1.52e-08!94;UBERON:0003056!2.61e-08!61;UBERON:0005631!1.09e-07!14;UBERON:0000158!1.09e-07!14;UBERON:0002780!1.13e-07!41;UBERON:0001890!1.13e-07!41;UBERON:0006240!1.13e-07!41;UBERON:0001869!1.86e-07!32;UBERON:0000477!2.02e-07!286;UBERON:0004111!2.44e-07!241;UBERON:0002020!2.54e-07!34;UBERON:0003528!2.54e-07!34;UBERON:0003080!2.62e-07!42;UBERON:0001893!3.30e-07!34;UBERON:0000025!7.63e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0000488;2.28e-11;4!UBERON:0002037;5.56e-11;6!UBERON:0000305;6.16e-10;7!UBERON:0005631;2.35e-09;10!UBERON:0000158;2.35e-09;10!UBERON:0001778;2.51e-09;3!UBERON:0001775;2.51e-09;3!UBERON:0007625;2.56e-08;11!UBERON:0002203;1.47e-07;6!UBERON:0001768;1.47e-07;6!UBERON:0002200;1.47e-07;6!UBERON:0002680;3.47e-07;9!UBERON:0001895;3.47e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000488,2.09e-11,4;UBERON:0005631,6.79e-11,14;UBERON:0000158,6.79e-11,14;UBERON:0002037,7.62e-11,6;UBERON:0006215,7.62e-11,6;UBERON:0004121,1.03e-10,171;UBERON:0000924,1.03e-10,171;UBERON:0006601,1.03e-10,171;UBERON:0010371,1.55e-10,104;UBERON:0000305,9.94e-10,7;UBERON:0002346,1.39e-09,86;UBERON:0001778,2.86e-09,3;UBERON:0001775,2.86e-09,3;UBERON:0003075,3.18e-09,82;UBERON:0007284,3.18e-09,82;UBERON:0004871,1.86e-08,8;UBERON:0007625,2.16e-08,11;UBERON:0005085,6.55e-08,31;UBERON:0001048,9.73e-08,160;UBERON:0002203,1.39e-07,6;UBERON:0001768,1.39e-07,6;UBERON:0002200,1.39e-07,6;UBERON:0002680,4.25e-07,9;UBERON:0001895,4.25e-07,9;UBERON:0010092,4.25e-07,9 | |||
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| |||
|short_description=p4@VSTM2L | |||
}} |
Revision as of 08:23, 12 September 2013
Short description: | p4@VSTM2L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_VSTM2L_5end |
Coexpression cluster: | C2617_brain_occipital_Alveolar_parietal_hippocampus_temporal_left |
Association with transcript: | -105bp_to_ENST00000373458, NM_080607, uc002xhk.3_5end |
EntrezGene: | VSTM2L |
HGNC: | 16096 |
UniProt: | F2Z3I3Q96N03 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 2.86e-09 | 3 |
ciliated epithelial cell | 2.86e-09 | 3 |
multi-ciliated epithelial cell | 2.86e-09 | 3 |
non-pigmented ciliary epithelial cell | 2.86e-09 | 3 |
astrocyte of the cerebellum | 4.91e-09 | 3 |
extraembryonic cell | 1.20e-07 | 19 |
amniotic epithelial cell | 4.76e-07 | 2 |
respiratory epithelial cell | 8.04e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
atypical epithelium | 2.09e-11 | 4 |
extraembryonic membrane | 6.79e-11 | 14 |
membranous layer | 6.79e-11 | 14 |
cerebellum | 7.62e-11 | 6 |
rhombic lip | 7.62e-11 | 6 |
ectoderm-derived structure | 1.03e-10 | 171 |
ectoderm | 1.03e-10 | 171 |
presumptive ectoderm | 1.03e-10 | 171 |
ecto-epithelium | 1.55e-10 | 104 |
amnion | 9.94e-10 | 7 |
neurectoderm | 1.39e-09 | 86 |
ciliary epithelium | 2.86e-09 | 3 |
ciliary body | 2.86e-09 | 3 |
neural plate | 3.18e-09 | 82 |
presumptive neural plate | 3.18e-09 | 82 |
somatic layer of lateral plate mesoderm | 1.86e-08 | 8 |
pigment epithelium of eye | 2.16e-08 | 11 |
ectodermal placode | 6.55e-08 | 31 |
primordium | 9.73e-08 | 160 |
vasculature of eye | 1.39e-07 | 6 |
uvea | 1.39e-07 | 6 |
vasculature of head | 1.39e-07 | 6 |
regional part of metencephalon | 4.25e-07 | 9 |
metencephalon | 4.25e-07 | 9 |
future metencephalon | 4.25e-07 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.