FFCP PHASE1:Hg19::chr2:142889101..142889104,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=53353|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6693|TSSclassifier=W|UniProt=Q9NZR2,Q96NT6|association_with_transcript=165bp_to_ENST00000389484,NM_018557,uc002tvj.1,uc010fnl.1_5end|description=CAGE_peak_13_at_LRP1B_5end|id=chr2:142889101..142889104,-|ontology_enrichment_celltype=CL:1001319!3.02e-07!1;CL:1000600!3.02e-07!1|ontology_enrichment_celltype_v019=CL:0002327;6.30e-26;4|ontology_enrichment_celltype_v019_2=CL:0002327,5.56e-26,4|ontology_enrichment_development_v019=UBERON:0008425;1.55e-98;1!UBERON:0006601;7.94e-07;82|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:5093;6.30e-26;4!DOID:1612;6.30e-26;4|ontology_enrichment_disease_v019_2=DOID:5093,5.56e-26,4;DOID:1612,5.56e-26,4|ontology_enrichment_uberon=UBERON:0001049!2.18e-36!57;UBERON:0005068!2.18e-36!57;UBERON:0006241!2.18e-36!57;UBERON:0007135!2.18e-36!57;UBERON:0002346!1.54e-29!90;UBERON:0003075!3.38e-28!86;UBERON:0007284!3.38e-28!86;UBERON:0002616!8.38e-28!59;UBERON:0001017!1.60e-26!82;UBERON:0005743!4.07e-25!86;UBERON:0002780!1.81e-24!41;UBERON:0001890!1.81e-24!41;UBERON:0006240!1.81e-24!41;UBERON:0003080!7.80e-24!42;UBERON:0000955!6.56e-23!69;UBERON:0006238!6.56e-23!69;UBERON:0000073!2.23e-22!94;UBERON:0001016!2.23e-22!94;UBERON:0001893!8.53e-22!34;UBERON:0007023!3.42e-20!115;UBERON:0001869!1.44e-19!32;UBERON:0002791!7.76e-19!33;UBERON:0002020!2.52e-18!34;UBERON:0003528!2.52e-18!34;UBERON:0003056!3.72e-18!61;UBERON:0002619!3.07e-15!22;UBERON:0000924!1.89e-14!173;UBERON:0006601!1.89e-14!173;UBERON:0003076!7.14e-14!15;UBERON:0003057!7.14e-14!15;UBERON:0000153!1.04e-13!129;UBERON:0007811!1.04e-13!129;UBERON:0004121!1.99e-13!169;UBERON:0000956!2.40e-13!25;UBERON:0000203!2.40e-13!25;UBERON:0000033!6.50e-13!123;UBERON:0001950!7.59e-13!20;UBERON:0002298!5.72e-12!8;UBERON:0000200!1.33e-09!6;UBERON:0002240!2.84e-09!3;UBERON:0002771!4.25e-09!3;UBERON:0001896!4.99e-09!3;UBERON:0005290!4.99e-09!3;UBERON:0010096!4.99e-09!3;UBERON:0000025!6.54e-09!194;UBERON:0000477!1.14e-08!286;UBERON:0000988!1.44e-08!3;UBERON:0000483!1.58e-08!309;UBERON:0000119!2.14e-08!312;UBERON:0004733!5.11e-08!12;UBERON:0002028!5.11e-08!12;UBERON:0007277!5.11e-08!12;UBERON:0004732!2.08e-07!13;UBERON:0002363!2.67e-07!1;UBERON:0007647!2.67e-07!1;UBERON:0010115!2.67e-07!1;UBERON:0004645!3.02e-07!1;UBERON:0001256!3.02e-07!1;UBERON:0001259!3.02e-07!1;UBERON:0001871!3.24e-07!7;UBERON:0004111!3.33e-07!241;UBERON:0007190!3.41e-07!1;UBERON:0002902!5.84e-07!1;UBERON:0009899!5.84e-07!1;UBERON:0002336!6.97e-07!1;UBERON:0001018!6.97e-07!1;UBERON:0002473!6.97e-07!1;UBERON:0005340!6.97e-07!1;UBERON:0002316!6.97e-07!1;UBERON:0003544!6.97e-07!1;UBERON:0001020!6.97e-07!1;UBERON:0005970!6.97e-07!1;UBERON:0002437!6.97e-07!1|ontology_enrichment_uberon_v019=UBERON:0001896;5.04e-34;3!UBERON:0005290;5.04e-34;3!UBERON:0001911;6.30e-26;4!UBERON:0002298;8.34e-18;6!UBERON:0000310;2.87e-11;10!UBERON:0001443;2.27e-10;11!UBERON:0004733;1.27e-09;12!UBERON:0002028;1.27e-09;12!UBERON:0004732;5.49e-09;13|ontology_enrichment_uberon_v019_2=UBERON:0001896,5.96e-34,3;UBERON:0005290,5.96e-34,3;UBERON:0010096,5.96e-34,3;UBERON:0001911,5.56e-26,4;UBERON:0005333,5.56e-26,4;UBERON:0008425,5.56e-26,4;UBERON:0005311,5.56e-26,4;UBERON:0002298,9.07e-18,6;UBERON:0000076,9.39e-14,8;UBERON:0000310,2.73e-11,10;UBERON:0001443,2.16e-10,11;UBERON:0004733,1.33e-09,12;UBERON:0002028,1.33e-09,12;UBERON:0007277,1.33e-09,12;UBERON:0004732,5.70e-09,13;UBERON:0003076,5.93e-08,15;UBERON:0003057,5.93e-08,15|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57427999993152,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.547621515567972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=53353 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6693 | |||
|TSSclassifier=W | |||
|UniProt=Q9NZR2,Q96NT6 | |||
|association_with_transcript=165bp_to_ENST00000389484,NM_018557,uc002tvj.1,uc010fnl.1_5end | |||
|description=CAGE_peak_13_at_LRP1B_5end | |||
|id=chr2:142889101..142889104,- | |||
|ontology_enrichment_celltype=CL:1001319!3.02e-07!1;CL:1000600!3.02e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0002327;6.30e-26;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002327,5.56e-26,4 | |||
|ontology_enrichment_development_v019=UBERON:0008425;1.55e-98;1!UBERON:0006601;7.94e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5093;6.30e-26;4!DOID:1612;6.30e-26;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,5.56e-26,4;DOID:1612,5.56e-26,4 | |||
|ontology_enrichment_uberon=UBERON:0001049!2.18e-36!57;UBERON:0005068!2.18e-36!57;UBERON:0006241!2.18e-36!57;UBERON:0007135!2.18e-36!57;UBERON:0002346!1.54e-29!90;UBERON:0003075!3.38e-28!86;UBERON:0007284!3.38e-28!86;UBERON:0002616!8.38e-28!59;UBERON:0001017!1.60e-26!82;UBERON:0005743!4.07e-25!86;UBERON:0002780!1.81e-24!41;UBERON:0001890!1.81e-24!41;UBERON:0006240!1.81e-24!41;UBERON:0003080!7.80e-24!42;UBERON:0000955!6.56e-23!69;UBERON:0006238!6.56e-23!69;UBERON:0000073!2.23e-22!94;UBERON:0001016!2.23e-22!94;UBERON:0001893!8.53e-22!34;UBERON:0007023!3.42e-20!115;UBERON:0001869!1.44e-19!32;UBERON:0002791!7.76e-19!33;UBERON:0002020!2.52e-18!34;UBERON:0003528!2.52e-18!34;UBERON:0003056!3.72e-18!61;UBERON:0002619!3.07e-15!22;UBERON:0000924!1.89e-14!173;UBERON:0006601!1.89e-14!173;UBERON:0003076!7.14e-14!15;UBERON:0003057!7.14e-14!15;UBERON:0000153!1.04e-13!129;UBERON:0007811!1.04e-13!129;UBERON:0004121!1.99e-13!169;UBERON:0000956!2.40e-13!25;UBERON:0000203!2.40e-13!25;UBERON:0000033!6.50e-13!123;UBERON:0001950!7.59e-13!20;UBERON:0002298!5.72e-12!8;UBERON:0000200!1.33e-09!6;UBERON:0002240!2.84e-09!3;UBERON:0002771!4.25e-09!3;UBERON:0001896!4.99e-09!3;UBERON:0005290!4.99e-09!3;UBERON:0010096!4.99e-09!3;UBERON:0000025!6.54e-09!194;UBERON:0000477!1.14e-08!286;UBERON:0000988!1.44e-08!3;UBERON:0000483!1.58e-08!309;UBERON:0000119!2.14e-08!312;UBERON:0004733!5.11e-08!12;UBERON:0002028!5.11e-08!12;UBERON:0007277!5.11e-08!12;UBERON:0004732!2.08e-07!13;UBERON:0002363!2.67e-07!1;UBERON:0007647!2.67e-07!1;UBERON:0010115!2.67e-07!1;UBERON:0004645!3.02e-07!1;UBERON:0001256!3.02e-07!1;UBERON:0001259!3.02e-07!1;UBERON:0001871!3.24e-07!7;UBERON:0004111!3.33e-07!241;UBERON:0007190!3.41e-07!1;UBERON:0002902!5.84e-07!1;UBERON:0009899!5.84e-07!1;UBERON:0002336!6.97e-07!1;UBERON:0001018!6.97e-07!1;UBERON:0002473!6.97e-07!1;UBERON:0005340!6.97e-07!1;UBERON:0002316!6.97e-07!1;UBERON:0003544!6.97e-07!1;UBERON:0001020!6.97e-07!1;UBERON:0005970!6.97e-07!1;UBERON:0002437!6.97e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0001896;5.04e-34;3!UBERON:0005290;5.04e-34;3!UBERON:0001911;6.30e-26;4!UBERON:0002298;8.34e-18;6!UBERON:0000310;2.87e-11;10!UBERON:0001443;2.27e-10;11!UBERON:0004733;1.27e-09;12!UBERON:0002028;1.27e-09;12!UBERON:0004732;5.49e-09;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,5.96e-34,3;UBERON:0005290,5.96e-34,3;UBERON:0010096,5.96e-34,3;UBERON:0001911,5.56e-26,4;UBERON:0005333,5.56e-26,4;UBERON:0008425,5.56e-26,4;UBERON:0005311,5.56e-26,4;UBERON:0002298,9.07e-18,6;UBERON:0000076,9.39e-14,8;UBERON:0000310,2.73e-11,10;UBERON:0001443,2.16e-10,11;UBERON:0004733,1.33e-09,12;UBERON:0002028,1.33e-09,12;UBERON:0007277,1.33e-09,12;UBERON:0004732,5.70e-09,13;UBERON:0003076,5.93e-08,15;UBERON:0003057,5.93e-08,15 | |||
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|short_description=p13@LRP1B | |||
}} |
Revision as of 13:42, 12 September 2013
Short description: | p13@LRP1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_LRP1B_5end |
Coexpression cluster: | NA |
Association with transcript: | 165bp_to_ENST00000389484, NM_018557, uc002tvj.1, uc010fnl.1_5end |
EntrezGene: | LRP1B |
HGNC: | 6693 |
UniProt: | Q9NZR2Q96NT6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mammary gland epithelial cell | 5.56e-26 | 4 |
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 5.96e-34 | 3 |
myelencephalon | 5.96e-34 | 3 |
future myelencephalon | 5.96e-34 | 3 |
mammary gland | 5.56e-26 | 4 |
mammary bud | 5.56e-26 | 4 |
mammary ridge | 5.56e-26 | 4 |
mammary placode | 5.56e-26 | 4 |
brainstem | 9.07e-18 | 6 |
external ectoderm | 9.39e-14 | 8 |
breast | 2.73e-11 | 10 |
chest | 2.16e-10 | 11 |
segmental subdivision of hindbrain | 1.33e-09 | 12 |
hindbrain | 1.33e-09 | 12 |
presumptive hindbrain | 1.33e-09 | 12 |
segmental subdivision of nervous system | 5.70e-09 | 13 |
posterior neural tube | 5.93e-08 | 15 |
chordal neural plate | 5.93e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 5.56e-26 | 4 |
breast cancer | 5.56e-26 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.