FFCP PHASE1:Hg19::chr2:176964515..176964540,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3238|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5135|TSSclassifier=S|UniProt=B5MCD3,P35452|association_with_transcript=0bp_to_ENST00000404162,NM_021193,uc010zev.1,uc010zew.1_5end|coexpression_cluster_id=C321|description=CAGE_peak_1_at_HOXD12_5end|id=chr2:176964515..176964540,+|ontology_enrichment_celltype=CL:0000039!7.77e-13!7;CL:0000586!7.77e-13!7|ontology_enrichment_celltype_v019=CL:0000214;6.76e-18;3!CL:0000039;2.26e-08;7!CL:0000586;2.26e-08;7!CL:0000153;7.48e-07;9!CL:0000447;7.48e-07;9|ontology_enrichment_celltype_v019_2=CL:0000214,6.76e-18,3;CL:0000039,2.35e-08,7;CL:0000586,2.35e-08,7;CL:0000153,7.48e-07,9;CL:0000447,7.48e-07,9|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:1115;5.16e-11;20|ontology_enrichment_disease_v019_2=DOID:1115,5.16e-11,20|ontology_enrichment_uberon=UBERON:0003101!2.31e-20!22;UBERON:0000079!2.31e-20!22;UBERON:0003135!3.52e-14!11;UBERON:0000473!2.66e-11!8;UBERON:0000989!3.76e-11!1;UBERON:0008811!3.76e-11!1;UBERON:0006258!3.76e-11!1;UBERON:0005876!3.76e-11!1;UBERON:0004874!3.76e-11!1;UBERON:0005156!3.01e-09!59;UBERON:0000990!3.01e-09!59;UBERON:0002367!3.32e-08!11;UBERON:0010147!3.32e-08!11;UBERON:0009846!3.32e-08!11;UBERON:0003353!3.32e-08!11;UBERON:0004902!3.32e-08!11;UBERON:0003820!3.32e-08!11;UBERON:0009847!3.32e-08!11;UBERON:0001046!3.46e-08!19;UBERON:0003937!1.46e-07!12;UBERON:0005399!1.46e-07!12|ontology_enrichment_uberon_v019=UBERON:0006915;6.76e-18;3!UBERON:0007616;6.76e-18;3!UBERON:0002217;6.76e-18;3!UBERON:0002018;6.76e-18;3!UBERON:0001052;1.21e-13;4!UBERON:0004907;3.42e-11;5!UBERON:0004905;1.49e-07;8!UBERON:0000982;1.49e-07;8!UBERON:0004770;1.49e-07;8!UBERON:0000473;1.75e-07;8!UBERON:0004457;7.48e-07;9!UBERON:0000042;7.48e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0006915,6.76e-18,3;UBERON:0007616,6.76e-18,3;UBERON:0002217,6.76e-18,3;UBERON:0002018,6.76e-18,3;UBERON:0001052,1.13e-13,4;UBERON:0004907,3.26e-11,5;UBERON:0004905,1.49e-07,8;UBERON:0000982,1.49e-07,8;UBERON:0004770,1.49e-07,8;UBERON:0000473,1.80e-07,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593929361665277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,2.73947616152849,0,0,0,0,0,7.30204743670834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.6147040204663,0,0,0,0,0,0,0,0,0,0.203977659483963,2.40495664739004,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0|short_description=p1@HOXD12}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=3238 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5135 | |||
|TSSclassifier=S | |||
|UniProt=B5MCD3,P35452 | |||
|association_with_transcript=0bp_to_ENST00000404162,NM_021193,uc010zev.1,uc010zew.1_5end | |||
|coexpression_cluster_id=C321 | |||
|description=CAGE_peak_1_at_HOXD12_5end | |||
|id=chr2:176964515..176964540,+ | |||
|ontology_enrichment_celltype=CL:0000039!7.77e-13!7;CL:0000586!7.77e-13!7 | |||
|ontology_enrichment_celltype_v019=CL:0000214;6.76e-18;3!CL:0000039;2.26e-08;7!CL:0000586;2.26e-08;7!CL:0000153;7.48e-07;9!CL:0000447;7.48e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000214,6.76e-18,3;CL:0000039,2.35e-08,7;CL:0000586,2.35e-08,7;CL:0000153,7.48e-07,9;CL:0000447,7.48e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1115;5.16e-11;20 | |||
|ontology_enrichment_disease_v019_2=DOID:1115,5.16e-11,20 | |||
|ontology_enrichment_uberon=UBERON:0003101!2.31e-20!22;UBERON:0000079!2.31e-20!22;UBERON:0003135!3.52e-14!11;UBERON:0000473!2.66e-11!8;UBERON:0000989!3.76e-11!1;UBERON:0008811!3.76e-11!1;UBERON:0006258!3.76e-11!1;UBERON:0005876!3.76e-11!1;UBERON:0004874!3.76e-11!1;UBERON:0005156!3.01e-09!59;UBERON:0000990!3.01e-09!59;UBERON:0002367!3.32e-08!11;UBERON:0010147!3.32e-08!11;UBERON:0009846!3.32e-08!11;UBERON:0003353!3.32e-08!11;UBERON:0004902!3.32e-08!11;UBERON:0003820!3.32e-08!11;UBERON:0009847!3.32e-08!11;UBERON:0001046!3.46e-08!19;UBERON:0003937!1.46e-07!12;UBERON:0005399!1.46e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0006915;6.76e-18;3!UBERON:0007616;6.76e-18;3!UBERON:0002217;6.76e-18;3!UBERON:0002018;6.76e-18;3!UBERON:0001052;1.21e-13;4!UBERON:0004907;3.42e-11;5!UBERON:0004905;1.49e-07;8!UBERON:0000982;1.49e-07;8!UBERON:0004770;1.49e-07;8!UBERON:0000473;1.75e-07;8!UBERON:0004457;7.48e-07;9!UBERON:0000042;7.48e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006915,6.76e-18,3;UBERON:0007616,6.76e-18,3;UBERON:0002217,6.76e-18,3;UBERON:0002018,6.76e-18,3;UBERON:0001052,1.13e-13,4;UBERON:0004907,3.26e-11,5;UBERON:0004905,1.49e-07,8;UBERON:0000982,1.49e-07,8;UBERON:0004770,1.49e-07,8;UBERON:0000473,1.80e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593929361665277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,2.73947616152849,0,0,0,0,0,7.30204743670834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.6147040204663,0,0,0,0,0,0,0,0,0,0.203977659483963,2.40495664739004,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p1@HOXD12 | |||
}} |
Revision as of 14:49, 12 September 2013
Short description: | p1@HOXD12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_HOXD12_5end |
Coexpression cluster: | C321_synovial_anaplastic_maxillary_glassy_keratoacanthoma_rhabdomyosarcoma_small |
Association with transcript: | 0bp_to_ENST00000404162, NM_021193, uc010zev.1, uc010zew.1_5end |
EntrezGene: | HOXD12 |
HGNC: | 5135 |
UniProt: | B5MCD3P35452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
synovial cell | 6.76e-18 | 3 |
germ line cell | 2.35e-08 | 7 |
germ cell | 2.35e-08 | 7 |
GAG secreting cell | 7.48e-07 | 9 |
carbohydrate secreting cell | 7.48e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelium | 6.76e-18 | 3 |
layer of synovial tissue | 6.76e-18 | 3 |
synovial joint | 6.76e-18 | 3 |
synovial membrane of synovial joint | 6.76e-18 | 3 |
rectum | 1.13e-13 | 4 |
lower digestive tract | 3.26e-11 | 5 |
articulation | 1.49e-07 | 8 |
skeletal joint | 1.49e-07 | 8 |
articular system | 1.49e-07 | 8 |
testis | 1.80e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
sarcoma | 5.16e-11 | 20 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.