FFCP PHASE1:Hg19::chr3:105164104..105164110,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C4258|description=CAGE_peak_at_chr3:105164104..105164110,+|id=chr3:105164104..105164110,+|ontology_enrichment_celltype=CL:0002009!1.69e-13!65;CL:0002057!1.10e-12!42;CL:0002194!3.51e-12!63;CL:0000576!3.51e-12!63;CL:0000040!3.51e-12!63;CL:0000559!3.51e-12!63;CL:0000557!9.07e-12!71;CL:0000860!4.60e-11!45;CL:0000839!3.27e-10!70;CL:0002087!3.45e-09!119;CL:0000766!4.36e-09!76;CL:0002031!6.33e-09!124;CL:0000738!4.79e-08!140|ontology_enrichment_celltype_v019=CL:0000860;2.01e-20;33!CL:0002057;2.01e-20;33!CL:0000473;5.94e-18;39!CL:0000234;5.94e-18;39!CL:0001014;5.36e-11;2!CL:0001016;5.36e-11;2!CL:0000576;1.08e-09;48!CL:0000064;2.50e-07;3!CL:0000067;2.50e-07;3!CL:0005012;2.50e-07;3!CL:0002304;2.50e-07;3!CL:0000766;2.85e-07;69|ontology_enrichment_celltype_v019_2=CL:0000860,2.09e-19,42;CL:0002057,2.09e-19,42;CL:0000473,3.08e-19,48;CL:0000234,3.08e-19,48;CL:0002009,1.21e-18,61;CL:0000557,1.19e-16,67;CL:0002194,1.03e-14,59;CL:0000576,1.03e-14,59;CL:0000040,1.03e-14,59;CL:0000559,1.03e-14,59;CL:0000839,7.93e-13,66;CL:0000766,1.68e-11,72;CL:0001014,4.89e-11,2;CL:0001016,4.89e-11,2;CL:0000763,5.94e-09,108;CL:0000049,5.94e-09,108;CL:0002031,1.06e-07,120;CL:0000064,1.63e-07,3;CL:0000067,1.63e-07,3;CL:0005012,1.63e-07,3;CL:0002304,1.63e-07,3|ontology_enrichment_development_v019=CL:0002057;5.74e-13;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!2.42e-12!80;UBERON:0001474!1.65e-11!86;UBERON:0004765!3.16e-10!101;UBERON:0001434!3.16e-10!101;UBERON:0002390!2.12e-09!102;UBERON:0003061!2.12e-09!102;UBERON:0002193!1.21e-07!112|ontology_enrichment_uberon_v019=UBERON:0001778;2.50e-07;3!UBERON:0001775;2.50e-07;3!UBERON:0002114;4.60e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.24e-16,76;UBERON:0001474,1.23e-14,82;UBERON:0004765,5.48e-13,90;UBERON:0002405,1.92e-12,93;UBERON:0002390,1.31e-11,98;UBERON:0003061,1.31e-11,98;UBERON:0001434,2.67e-11,100;UBERON:0002193,3.55e-10,108;UBERON:0001778,1.63e-07,3;UBERON:0001775,1.63e-07,3;UBERON:0002114,6.67e-07,2;UBERON:0002204,7.12e-07,167|phase1_expression=0,0.214100523890983,0.422863212287913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.410623275218653,0.125542639594803,0.0764134057479513,0,0.0787107813136792,0,0,0,0,0,0,0,0.142169232487422,0.587200878669695,0,1.00272223735071,0.434021741431704,0.223915474239924,0.647787332037959,0.257575567634187,0.290796477559129,0,0.242584061187816,0.929716147622738,4.11167888021826,1.23882548358041,0.575384784644301,0.512321413058201,0.236482229888585,2.75796544589295,1.29096936716765,5.41705946377367,0.752969358170419,0.545812300115692,0.224723484445085,1.53041946185451,0.962787081228281,1.91801137739712,0,0.598390972864896,0.426224750532694,9.86711411337186,1.13477044938228,1.24564449799115,2.00998932205395,4.17186334736161,0.65156653411535,2.42159801053347,0.736555271975129,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0.569212969109448,0,0,0,0,0,0.590129310341499,0.786021525498329,0.616804496998528,0,0.32592226663359,0.473447805734733,0,0,0.294605907474837,0,0.270803863765016,0.128091319725675,0,0.328875809207352,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0.289648807765598,0,0,0,0,0,0,0,0,0.756278537312543,2.4390233720882,1.66886092816939,0,0,0,0,0,0.398873881556595,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,2.29469296599051,0,0.560677600142307,0,0,0,0,0.326923806226917,0,0,0,0,0,0,0,0,0,0.408308342509787,0.368502951935304,0,0,0.247266929278557,0,0,0.168336113954066,0.375355559615893,0,0,0.30648779579902,0,0,1.07633781413317,0,0.211931901159562,0.300091096084402,0,0.515281080091258,0,1.5189869901714,0,1.00973509697646,0,0,0.355009592516614,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0.380508304469197,0,0,0.246217006087397,0.702012795417713,0.743155811443641,0,0,0,0,0.290633938513962,0,0,0.264145302039678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.199945982364114,0,0,2.10833939483032,0.239624855491583,0,1.42636905040718,0.289562613335158,1.43833425785268,0.179060963239896,0,0,0.646882724578552,0.385029108839245,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0.831883446123229,0,0.157702415033935,0.585707074963566,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0.306923946576125,0.280660094433074,0,0.511707249066704,0.321707842287215,0,0,0,0,0,0,0.120859449591622,0,0.552485933615378,0,0,0,0.451199612907412,0,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0.27470839445503,0,0,0,0,0.096670718292122,0,0.15350367472613,0.137836572484531,0.107420244868274,0.29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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C4258 | |||
|description=CAGE_peak_at_chr3:105164104..105164110,+ | |||
|id=chr3:105164104..105164110,+ | |||
|ontology_enrichment_celltype=CL:0002009!1.69e-13!65;CL:0002057!1.10e-12!42;CL:0002194!3.51e-12!63;CL:0000576!3.51e-12!63;CL:0000040!3.51e-12!63;CL:0000559!3.51e-12!63;CL:0000557!9.07e-12!71;CL:0000860!4.60e-11!45;CL:0000839!3.27e-10!70;CL:0002087!3.45e-09!119;CL:0000766!4.36e-09!76;CL:0002031!6.33e-09!124;CL:0000738!4.79e-08!140 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.01e-20;33!CL:0002057;2.01e-20;33!CL:0000473;5.94e-18;39!CL:0000234;5.94e-18;39!CL:0001014;5.36e-11;2!CL:0001016;5.36e-11;2!CL:0000576;1.08e-09;48!CL:0000064;2.50e-07;3!CL:0000067;2.50e-07;3!CL:0005012;2.50e-07;3!CL:0002304;2.50e-07;3!CL:0000766;2.85e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.09e-19,42;CL:0002057,2.09e-19,42;CL:0000473,3.08e-19,48;CL:0000234,3.08e-19,48;CL:0002009,1.21e-18,61;CL:0000557,1.19e-16,67;CL:0002194,1.03e-14,59;CL:0000576,1.03e-14,59;CL:0000040,1.03e-14,59;CL:0000559,1.03e-14,59;CL:0000839,7.93e-13,66;CL:0000766,1.68e-11,72;CL:0001014,4.89e-11,2;CL:0001016,4.89e-11,2;CL:0000763,5.94e-09,108;CL:0000049,5.94e-09,108;CL:0002031,1.06e-07,120;CL:0000064,1.63e-07,3;CL:0000067,1.63e-07,3;CL:0005012,1.63e-07,3;CL:0002304,1.63e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;5.74e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.42e-12!80;UBERON:0001474!1.65e-11!86;UBERON:0004765!3.16e-10!101;UBERON:0001434!3.16e-10!101;UBERON:0002390!2.12e-09!102;UBERON:0003061!2.12e-09!102;UBERON:0002193!1.21e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0001778;2.50e-07;3!UBERON:0001775;2.50e-07;3!UBERON:0002114;4.60e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.24e-16,76;UBERON:0001474,1.23e-14,82;UBERON:0004765,5.48e-13,90;UBERON:0002405,1.92e-12,93;UBERON:0002390,1.31e-11,98;UBERON:0003061,1.31e-11,98;UBERON:0001434,2.67e-11,100;UBERON:0002193,3.55e-10,108;UBERON:0001778,1.63e-07,3;UBERON:0001775,1.63e-07,3;UBERON:0002114,6.67e-07,2;UBERON:0002204,7.12e-07,167 | |||
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| |||
|short_description=p@chr3:105164104..105164110,+ | |||
}} |
Revision as of 20:35, 12 September 2013
Short description: | p@chr3:105164104..105164110, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:105164104..105164110, + |
Coexpression cluster: | C4258_CD14_gastrointestinal_Ciliary_Fibroblast_globus_Small_immature |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.09e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.09e-19 | 42 |
defensive cell | 3.08e-19 | 48 |
phagocyte | 3.08e-19 | 48 |
macrophage dendritic cell progenitor | 1.21e-18 | 61 |
granulocyte monocyte progenitor cell | 1.19e-16 | 67 |
monopoietic cell | 1.03e-14 | 59 |
monocyte | 1.03e-14 | 59 |
monoblast | 1.03e-14 | 59 |
promonocyte | 1.03e-14 | 59 |
myeloid lineage restricted progenitor cell | 7.93e-13 | 66 |
myeloid leukocyte | 1.68e-11 | 72 |
CD1a-positive Langerhans cell | 4.89e-11 | 2 |
immature CD1a-positive Langerhans cell | 4.89e-11 | 2 |
myeloid cell | 5.94e-09 | 108 |
common myeloid progenitor | 5.94e-09 | 108 |
hematopoietic lineage restricted progenitor cell | 1.06e-07 | 120 |
ciliated cell | 1.63e-07 | 3 |
ciliated epithelial cell | 1.63e-07 | 3 |
multi-ciliated epithelial cell | 1.63e-07 | 3 |
non-pigmented ciliary epithelial cell | 1.63e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.24e-16 | 76 |
bone element | 1.23e-14 | 82 |
skeletal element | 5.48e-13 | 90 |
immune system | 1.92e-12 | 93 |
hematopoietic system | 1.31e-11 | 98 |
blood island | 1.31e-11 | 98 |
skeletal system | 2.67e-11 | 100 |
hemolymphoid system | 3.55e-10 | 108 |
ciliary epithelium | 1.63e-07 | 3 |
ciliary body | 1.63e-07 | 3 |
duodenum | 6.67e-07 | 2 |
musculoskeletal system | 7.12e-07 | 167 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.