FFCP PHASE1:Hg19::chr3:106393655..106393659,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C479|description=CAGE_peak_at_chr3:106393655..106393659,+|id=chr3:106393655..106393659,+|ontology_enrichment_celltype=CL:0000054!7.30e-14!2;CL:0000137!7.30e-14!2;CL:0000092!7.30e-14!2;CL:0000068!1.81e-09!3;CL:0000069!1.81e-09!3;CL:0000307!1.81e-09!3;CL:0000377!1.81e-09!3;CL:1000306!1.80e-07!4;CL:0002547!1.80e-07!4;CL:0000243!8.11e-07!15;CL:0000125!8.11e-07!15;CL:0000030!8.11e-07!15;CL:0000339!8.11e-07!15|ontology_enrichment_celltype_v019=CL:0000054;4.52e-50;2!CL:0000137;4.52e-50;2!CL:0000092;4.52e-50;2!CL:0002092;3.02e-11;10!CL:0000182;1.22e-09;12|ontology_enrichment_celltype_v019_2=CL:0000054,4.52e-50,2;CL:0000137,4.52e-50,2;CL:0000092,4.52e-50,2;CL:0002092,3.02e-11,10;CL:0000062,2.37e-10,11;CL:0000375,2.37e-10,11;CL:0000335,2.37e-10,11;CL:0000182,1.22e-09,12|ontology_enrichment_development_v019=UBERON:0004161;2.16e-10;11!CL:0000335;2.37e-10;11!UBERON:0009497;5.28e-09;13|ontology_enrichment_disease=DOID:5662!2.16e-26!1;DOID:0060085!2.78e-26!1;DOID:3165!2.78e-26!1;DOID:0060121!2.78e-26!1;DOID:2438!2.78e-26!1;DOID:4418!2.78e-26!1;DOID:6193!9.79e-26!1;DOID:200!7.30e-14!2;DOID:4305!7.30e-14!2;DOID:3350!1.37e-13!2;DOID:3093!2.77e-09!11;DOID:0060072!1.40e-07!4|ontology_enrichment_disease_v019=DOID:5662;9.37e-99;1!DOID:0060085;2.55e-98;1!DOID:3165;2.55e-98;1!DOID:0060121;2.55e-98;1!DOID:2438;2.55e-98;1!DOID:4418;2.55e-98;1!DOID:200;4.52e-50;2!DOID:4305;4.52e-50;2!DOID:0060072;7.14e-26;4!DOID:201;9.07e-18;6!DOID:0060100;9.07e-18;6!DOID:7;1.57e-09;39|ontology_enrichment_disease_v019_2=DOID:5662,9.37e-99,1;DOID:0060085,2.55e-98,1;DOID:3165,2.55e-98,1;DOID:0060121,2.55e-98,1;DOID:2438,2.55e-98,1;DOID:4418,2.55e-98,1;DOID:200,4.52e-50,2;DOID:4305,4.52e-50,2;DOID:0060072,7.14e-26,4;DOID:201,9.07e-18,6;DOID:0060100,9.07e-18,6;DOID:7,2.03e-11,39|ontology_enrichment_uberon=UBERON:0000014!1.40e-07!4;UBERON:0000415!1.80e-07!4;UBERON:0007240!1.80e-07!4;UBERON:0005742!1.80e-07!4;UBERON:0005734!1.80e-07!4;UBERON:0004664!1.80e-07!4;UBERON:0004663!1.80e-07!4|ontology_enrichment_uberon_v019=UBERON:0000014;7.14e-26;4!UBERON:0002371;1.33e-09;12!UBERON:0001474;7.60e-07;18|ontology_enrichment_uberon_v019_2=UBERON:0000014,7.14e-26,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,1.58971689362392,0,0,0,0,0,0,0,0,0,0,0,0.407712618220842,0.523014231561666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.80166426424772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr3:106393655..106393659,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C479 | |||
|description=CAGE_peak_at_chr3:106393655..106393659,+ | |||
|id=chr3:106393655..106393659,+ | |||
|ontology_enrichment_celltype=CL:0000054!7.30e-14!2;CL:0000137!7.30e-14!2;CL:0000092!7.30e-14!2;CL:0000068!1.81e-09!3;CL:0000069!1.81e-09!3;CL:0000307!1.81e-09!3;CL:0000377!1.81e-09!3;CL:1000306!1.80e-07!4;CL:0002547!1.80e-07!4;CL:0000243!8.11e-07!15;CL:0000125!8.11e-07!15;CL:0000030!8.11e-07!15;CL:0000339!8.11e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0000054;4.52e-50;2!CL:0000137;4.52e-50;2!CL:0000092;4.52e-50;2!CL:0002092;3.02e-11;10!CL:0000182;1.22e-09;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000054,4.52e-50,2;CL:0000137,4.52e-50,2;CL:0000092,4.52e-50,2;CL:0002092,3.02e-11,10;CL:0000062,2.37e-10,11;CL:0000375,2.37e-10,11;CL:0000335,2.37e-10,11;CL:0000182,1.22e-09,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.16e-10;11!CL:0000335;2.37e-10;11!UBERON:0009497;5.28e-09;13 | |||
|ontology_enrichment_disease=DOID:5662!2.16e-26!1;DOID:0060085!2.78e-26!1;DOID:3165!2.78e-26!1;DOID:0060121!2.78e-26!1;DOID:2438!2.78e-26!1;DOID:4418!2.78e-26!1;DOID:6193!9.79e-26!1;DOID:200!7.30e-14!2;DOID:4305!7.30e-14!2;DOID:3350!1.37e-13!2;DOID:3093!2.77e-09!11;DOID:0060072!1.40e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:5662;9.37e-99;1!DOID:0060085;2.55e-98;1!DOID:3165;2.55e-98;1!DOID:0060121;2.55e-98;1!DOID:2438;2.55e-98;1!DOID:4418;2.55e-98;1!DOID:200;4.52e-50;2!DOID:4305;4.52e-50;2!DOID:0060072;7.14e-26;4!DOID:201;9.07e-18;6!DOID:0060100;9.07e-18;6!DOID:7;1.57e-09;39 | |||
|ontology_enrichment_disease_v019_2=DOID:5662,9.37e-99,1;DOID:0060085,2.55e-98,1;DOID:3165,2.55e-98,1;DOID:0060121,2.55e-98,1;DOID:2438,2.55e-98,1;DOID:4418,2.55e-98,1;DOID:200,4.52e-50,2;DOID:4305,4.52e-50,2;DOID:0060072,7.14e-26,4;DOID:201,9.07e-18,6;DOID:0060100,9.07e-18,6;DOID:7,2.03e-11,39 | |||
|ontology_enrichment_uberon=UBERON:0000014!1.40e-07!4;UBERON:0000415!1.80e-07!4;UBERON:0007240!1.80e-07!4;UBERON:0005742!1.80e-07!4;UBERON:0005734!1.80e-07!4;UBERON:0004664!1.80e-07!4;UBERON:0004663!1.80e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000014;7.14e-26;4!UBERON:0002371;1.33e-09;12!UBERON:0001474;7.60e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000014,7.14e-26,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,1.58971689362392,0,0,0,0,0,0,0,0,0,0,0,0.407712618220842,0.523014231561666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.80166426424772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:106393655..106393659,+ | |||
}} |
Revision as of 20:36, 12 September 2013
Short description: | p@chr3:106393655..106393659, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:106393655..106393659, + |
Coexpression cluster: | C479_pleomorphic_mesothelioma_cholangiocellular_melanoma_Saos2_serous_glioblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone matrix secreting cell | 4.52e-50 | 2 |
osteocyte | 4.52e-50 | 2 |
osteoclast | 4.52e-50 | 2 |
bone marrow cell | 3.02e-11 | 10 |
osteoblast | 2.37e-10 | 11 |
osteoprogenitor cell | 2.37e-10 | 11 |
mesenchyme condensation cell | 2.37e-10 | 11 |
hepatocyte | 1.22e-09 | 12 |
Ontology term | p-value | n |
---|---|---|
zone of skin | 7.14e-26 | 4 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 9.37e-99 | 1 |
organ system benign neoplasm | 2.55e-98 | 1 |
skin benign neoplasm | 2.55e-98 | 1 |
integumentary system benign neoplasm | 2.55e-98 | 1 |
dermis tumor | 2.55e-98 | 1 |
cutaneous fibrous histiocytoma | 2.55e-98 | 1 |
giant cell tumor | 4.52e-50 | 2 |
bone giant cell tumor | 4.52e-50 | 2 |
benign neoplasm | 7.14e-26 | 4 |
connective tissue cancer | 9.07e-18 | 6 |
musculoskeletal system cancer | 9.07e-18 | 6 |
disease of anatomical entity | 2.03e-11 | 39 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.