FFCP PHASE1:Hg19::chr3:110846331..110846333,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:110846331..110846333,+|id=chr3:110846331..110846333,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000064;3.75e-66;3!CL:0000067;3.75e-66;3!CL:0005012;3.75e-66;3!CL:0002304;3.75e-66;3!CL:0000710;1.36e-10;20!CL:0002605;1.12e-08;3!CL:0000075;5.24e-08;27|ontology_enrichment_celltype_v019_2=CL:0000064,7.85e-67,3;CL:0000067,7.85e-67,3;CL:0005012,7.85e-67,3;CL:0002304,7.85e-67,3;CL:0000710,1.08e-10,20;CL:0002605,1.51e-08,3;CL:0000075,4.43e-08,27|ontology_enrichment_development_v019=UBERON:0006241;1.12e-08;3!UBERON:0003057;1.12e-08;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3307;2.31e-12;2|ontology_enrichment_disease_v019_2=DOID:3307,1.65e-12,2|ontology_enrichment_uberon=UBERON:0001017!1.15e-19!82;UBERON:0005743!4.19e-18!86;UBERON:0001049!6.85e-18!57;UBERON:0005068!6.85e-18!57;UBERON:0006241!6.85e-18!57;UBERON:0007135!6.85e-18!57;UBERON:0000073!6.59e-16!94;UBERON:0001016!6.59e-16!94;UBERON:0003075!1.64e-15!86;UBERON:0007284!1.64e-15!86;UBERON:0002616!1.95e-15!59;UBERON:0000955!2.61e-15!69;UBERON:0006238!2.61e-15!69;UBERON:0002346!2.78e-15!90;UBERON:0002780!9.52e-14!41;UBERON:0001890!9.52e-14!41;UBERON:0006240!9.52e-14!41;UBERON:0001893!2.51e-13!34;UBERON:0002020!3.03e-13!34;UBERON:0003528!3.03e-13!34;UBERON:0003080!3.06e-13!42;UBERON:0003056!1.89e-12!61;UBERON:0002791!2.02e-12!33;UBERON:0000033!3.06e-12!123;UBERON:0000956!8.91e-12!25;UBERON:0000203!8.91e-12!25;UBERON:0001869!1.54e-11!32;UBERON:0000924!2.87e-11!173;UBERON:0006601!2.87e-11!173;UBERON:0004121!3.10e-11!169;UBERON:0000153!4.96e-11!129;UBERON:0007811!4.96e-11!129;UBERON:0001950!2.39e-10!20;UBERON:0002619!2.56e-10!22;UBERON:0007023!5.37e-08!115|ontology_enrichment_uberon_v019=UBERON:0001778;3.75e-66;3!UBERON:0001775;3.75e-66;3!UBERON:0000488;7.19e-50;4!UBERON:0002203;1.46e-33;6!UBERON:0001768;1.46e-33;6!UBERON:0002200;1.46e-33;6!UBERON:0007625;1.10e-18;11!UBERON:0006876;1.10e-18;11!UBERON:0001801;7.69e-15;14!UBERON:0001871;1.39e-13;6!UBERON:0000019;4.07e-11;19!UBERON:0000047;4.07e-11;19!UBERON:0004088;4.07e-11;19!UBERON:0010230;4.07e-11;19!UBERON:0000970;1.36e-10;20!UBERON:0002104;4.04e-10;21!UBERON:0001456;4.04e-10;21!UBERON:0000020;2.70e-09;23!UBERON:0001032;6.21e-09;24!UBERON:0004456;6.21e-09;24!UBERON:0002240;1.12e-08;3!UBERON:0005174;1.12e-08;3!UBERON:0001137;1.12e-08;3!UBERON:0000956;2.72e-08;25!UBERON:0000203;2.72e-08;25!UBERON:0002791;2.90e-07;32!UBERON:0001869;2.90e-07;32!UBERON:0010371;6.43e-07;31|ontology_enrichment_uberon_v019_2=UBERON:0001778,7.85e-67,3;UBERON:0001775,7.85e-67,3;UBERON:0000488,2.23e-50,4;UBERON:0002203,6.72e-34,6;UBERON:0001768,6.72e-34,6;UBERON:0002200,6.72e-34,6;UBERON:0007625,7.22e-19,11;UBERON:0006876,7.22e-19,11;UBERON:0001801,5.52e-15,14;UBERON:0001871,1.69e-13,6;UBERON:0003075,6.81e-13,82;UBERON:0007284,6.81e-13,82;UBERON:0003056,8.27e-13,61;UBERON:0002346,2.70e-12,86;UBERON:0000019,1.08e-10,20;UBERON:0000047,1.08e-10,20;UBERON:0010312,1.08e-10,20;UBERON:0004088,1.08e-10,20;UBERON:0010230,1.08e-10,20;UBERON:0003072,1.08e-10,20;UBERON:0004128,1.08e-10,20;UBERON:0003071,1.08e-10,20;UBERON:0000970,3.25e-10,21;UBERON:0002104,3.25e-10,21;UBERON:0010371,3.67e-10,104;UBERON:0001456,8.86e-10,22;UBERON:0000020,5.14e-09,24;UBERON:0001032,5.14e-09,24;UBERON:0004456,5.14e-09,24;UBERON:0002240,1.12e-08,3;UBERON:0005174,1.12e-08,3;UBERON:0001137,1.12e-08,3;UBERON:0000956,3.24e-08,25;UBERON:0000203,3.24e-08,25;UBERON:0010314,5.60e-08,132;UBERON:0005085,4.12e-07,31|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572471974262113,0,1.12988375635323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0.950452044448374,0,0,0,0,0,0.403213486449465,0,0.144824403882799,0,0.670700859703636,0,0,0,0,0,0,1.98523116044542,1.33037638477538,1.31752178539689,0.327447688744282,0,0,0,0,0,0,0,0,0.39752481473341,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0.326923806226917,0,0,0,0,0,0.149448680551801,0.23486899728753,0,0.280901613404497,0.204154171254893,0.245668634623536,0,0,0.247266929278557,0,0,0.673344455816265,0,0,0,0,0.150238058906597,0,0.179389635688862,0,0.211931901159562,0,0.103052529238439,0,0,0.506328996723799,0,0.757301322732344,0.0920498986422993,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0,0,0,0,0,0.231860809950154,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.387815147273333,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0.239624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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:110846331..110846333,+ | |||
|id=chr3:110846331..110846333,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000064;3.75e-66;3!CL:0000067;3.75e-66;3!CL:0005012;3.75e-66;3!CL:0002304;3.75e-66;3!CL:0000710;1.36e-10;20!CL:0002605;1.12e-08;3!CL:0000075;5.24e-08;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,7.85e-67,3;CL:0000067,7.85e-67,3;CL:0005012,7.85e-67,3;CL:0002304,7.85e-67,3;CL:0000710,1.08e-10,20;CL:0002605,1.51e-08,3;CL:0000075,4.43e-08,27 | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.12e-08;3!UBERON:0003057;1.12e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3307;2.31e-12;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3307,1.65e-12,2 | |||
|ontology_enrichment_uberon=UBERON:0001017!1.15e-19!82;UBERON:0005743!4.19e-18!86;UBERON:0001049!6.85e-18!57;UBERON:0005068!6.85e-18!57;UBERON:0006241!6.85e-18!57;UBERON:0007135!6.85e-18!57;UBERON:0000073!6.59e-16!94;UBERON:0001016!6.59e-16!94;UBERON:0003075!1.64e-15!86;UBERON:0007284!1.64e-15!86;UBERON:0002616!1.95e-15!59;UBERON:0000955!2.61e-15!69;UBERON:0006238!2.61e-15!69;UBERON:0002346!2.78e-15!90;UBERON:0002780!9.52e-14!41;UBERON:0001890!9.52e-14!41;UBERON:0006240!9.52e-14!41;UBERON:0001893!2.51e-13!34;UBERON:0002020!3.03e-13!34;UBERON:0003528!3.03e-13!34;UBERON:0003080!3.06e-13!42;UBERON:0003056!1.89e-12!61;UBERON:0002791!2.02e-12!33;UBERON:0000033!3.06e-12!123;UBERON:0000956!8.91e-12!25;UBERON:0000203!8.91e-12!25;UBERON:0001869!1.54e-11!32;UBERON:0000924!2.87e-11!173;UBERON:0006601!2.87e-11!173;UBERON:0004121!3.10e-11!169;UBERON:0000153!4.96e-11!129;UBERON:0007811!4.96e-11!129;UBERON:0001950!2.39e-10!20;UBERON:0002619!2.56e-10!22;UBERON:0007023!5.37e-08!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001778;3.75e-66;3!UBERON:0001775;3.75e-66;3!UBERON:0000488;7.19e-50;4!UBERON:0002203;1.46e-33;6!UBERON:0001768;1.46e-33;6!UBERON:0002200;1.46e-33;6!UBERON:0007625;1.10e-18;11!UBERON:0006876;1.10e-18;11!UBERON:0001801;7.69e-15;14!UBERON:0001871;1.39e-13;6!UBERON:0000019;4.07e-11;19!UBERON:0000047;4.07e-11;19!UBERON:0004088;4.07e-11;19!UBERON:0010230;4.07e-11;19!UBERON:0000970;1.36e-10;20!UBERON:0002104;4.04e-10;21!UBERON:0001456;4.04e-10;21!UBERON:0000020;2.70e-09;23!UBERON:0001032;6.21e-09;24!UBERON:0004456;6.21e-09;24!UBERON:0002240;1.12e-08;3!UBERON:0005174;1.12e-08;3!UBERON:0001137;1.12e-08;3!UBERON:0000956;2.72e-08;25!UBERON:0000203;2.72e-08;25!UBERON:0002791;2.90e-07;32!UBERON:0001869;2.90e-07;32!UBERON:0010371;6.43e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,7.85e-67,3;UBERON:0001775,7.85e-67,3;UBERON:0000488,2.23e-50,4;UBERON:0002203,6.72e-34,6;UBERON:0001768,6.72e-34,6;UBERON:0002200,6.72e-34,6;UBERON:0007625,7.22e-19,11;UBERON:0006876,7.22e-19,11;UBERON:0001801,5.52e-15,14;UBERON:0001871,1.69e-13,6;UBERON:0003075,6.81e-13,82;UBERON:0007284,6.81e-13,82;UBERON:0003056,8.27e-13,61;UBERON:0002346,2.70e-12,86;UBERON:0000019,1.08e-10,20;UBERON:0000047,1.08e-10,20;UBERON:0010312,1.08e-10,20;UBERON:0004088,1.08e-10,20;UBERON:0010230,1.08e-10,20;UBERON:0003072,1.08e-10,20;UBERON:0004128,1.08e-10,20;UBERON:0003071,1.08e-10,20;UBERON:0000970,3.25e-10,21;UBERON:0002104,3.25e-10,21;UBERON:0010371,3.67e-10,104;UBERON:0001456,8.86e-10,22;UBERON:0000020,5.14e-09,24;UBERON:0001032,5.14e-09,24;UBERON:0004456,5.14e-09,24;UBERON:0002240,1.12e-08,3;UBERON:0005174,1.12e-08,3;UBERON:0001137,1.12e-08,3;UBERON:0000956,3.24e-08,25;UBERON:0000203,3.24e-08,25;UBERON:0010314,5.60e-08,132;UBERON:0005085,4.12e-07,31 | |||
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|short_description=p@chr3:110846331..110846333,+ | |||
}} |
Revision as of 20:42, 12 September 2013
Short description: | p@chr3:110846331..110846333, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:110846331..110846333, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 7.85e-67 | 3 |
ciliated epithelial cell | 7.85e-67 | 3 |
multi-ciliated epithelial cell | 7.85e-67 | 3 |
non-pigmented ciliary epithelial cell | 7.85e-67 | 3 |
neurecto-epithelial cell | 1.08e-10 | 20 |
astrocyte of the cerebral cortex | 1.51e-08 | 3 |
columnar/cuboidal epithelial cell | 4.43e-08 | 27 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 7.85e-67 | 3 |
ciliary body | 7.85e-67 | 3 |
atypical epithelium | 2.23e-50 | 4 |
vasculature of eye | 6.72e-34 | 6 |
uvea | 6.72e-34 | 6 |
vasculature of head | 6.72e-34 | 6 |
pigment epithelium of eye | 7.22e-19 | 11 |
vasculature of organ | 7.22e-19 | 11 |
anterior segment of eyeball | 5.52e-15 | 14 |
temporal lobe | 1.69e-13 | 6 |
neural plate | 6.81e-13 | 82 |
presumptive neural plate | 6.81e-13 | 82 |
pre-chordal neural plate | 8.27e-13 | 61 |
neurectoderm | 2.70e-12 | 86 |
camera-type eye | 1.08e-10 | 20 |
simple eye | 1.08e-10 | 20 |
immature eye | 1.08e-10 | 20 |
ocular region | 1.08e-10 | 20 |
eyeball of camera-type eye | 1.08e-10 | 20 |
optic cup | 1.08e-10 | 20 |
optic vesicle | 1.08e-10 | 20 |
eye primordium | 1.08e-10 | 20 |
eye | 3.25e-10 | 21 |
visual system | 3.25e-10 | 21 |
ecto-epithelium | 3.67e-10 | 104 |
face | 8.86e-10 | 22 |
sense organ | 5.14e-09 | 24 |
sensory system | 5.14e-09 | 24 |
entire sense organ system | 5.14e-09 | 24 |
spinal cord | 1.12e-08 | 3 |
dorsal region element | 1.12e-08 | 3 |
dorsum | 1.12e-08 | 3 |
cerebral cortex | 3.24e-08 | 25 |
pallium | 3.24e-08 | 25 |
structure with developmental contribution from neural crest | 5.60e-08 | 132 |
ectodermal placode | 4.12e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
teratoma | 1.65e-12 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.