FFCP PHASE1:Mm9::chr11:82891660..82891684,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=3|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:82891660..82891684,-|id=chr11:82891660..82891684,-|ontology_enrichment_celltype=CL:0000838!6.66e-08!12;CL:0000988!1.69e-07!32;CL:0002032!1.69e-07!32;CL:0000037!1.69e-07!32;CL:0000566!1.69e-07!32;CL:0000837!1.69e-07!32;CL:0000542!4.58e-07!13;CL:0000051!4.58e-07!13;CL:0000084!6.36e-07!11;CL:0000827!6.36e-07!11|ontology_enrichment_celltype_v019_2=CL:0000838,1.11e-08,12;CL:0000542,5.36e-08,13;CL:0000051,5.36e-08,13;CL:0000791,1.22e-07,9;CL:0000789,1.22e-07,9;CL:0002420,1.22e-07,9;CL:0002419,1.22e-07,9;CL:0000790,1.22e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0060100,2.69e-14,3;DOID:4045,2.69e-14,3;DOID:0050686,2.26e-07,6|ontology_enrichment_uberon=UBERON:0004177!9.28e-16!29;UBERON:0003408!3.20e-14!24;UBERON:0006562!6.92e-14!24;UBERON:0001557!6.92e-14!24;UBERON:0001042!6.92e-14!24;UBERON:0008814!6.92e-14!24;UBERON:0009145!6.92e-14!24;UBERON:0002390!1.22e-13!45;UBERON:0003061!1.22e-13!45;UBERON:0002193!1.76e-13!48;UBERON:0002370!2.69e-13!23;UBERON:0000974!2.69e-13!23;UBERON:0004807!2.69e-13!23;UBERON:0005058!2.69e-13!23;UBERON:0003351!2.69e-13!23;UBERON:0009113!2.69e-13!23;UBERON:0003295!2.69e-13!23;UBERON:0009722!2.69e-13!23;UBERON:0005562!2.69e-13!23;UBERON:0007690!2.69e-13!23;UBERON:0001004!8.10e-12!42;UBERON:0000072!1.44e-11!27;UBERON:0000065!4.76e-11!41;UBERON:0000063!2.35e-08!35;UBERON:0002405!1.32e-07!70;UBERON:0003081!2.04e-07!88;UBERON:0005057!3.54e-07!51|ontology_enrichment_uberon_v019_2=UBERON:0003408,9.31e-13,24;UBERON:0002370,1.25e-10,23;UBERON:0000974,1.25e-10,23;UBERON:0004807,1.25e-10,23;UBERON:0005058,1.25e-10,23;UBERON:0003351,1.25e-10,23;UBERON:0009113,1.25e-10,23;UBERON:0003295,1.25e-10,23;UBERON:0009722,1.25e-10,23;UBERON:0005562,1.25e-10,23;UBERON:0007690,1.25e-10,23;UBERON:0006562,3.83e-10,24;UBERON:0001557,3.83e-10,24;UBERON:0001042,3.83e-10,24;UBERON:0008814,3.83e-10,24;UBERON:0009145,3.83e-10,24;UBERON:0000072,6.68e-09,27;UBERON:0004177,3.24e-08,29;UBERON:0005057,3.24e-08,29;UBERON:0007811,4.45e-08,36;UBERON:0002193,3.35e-07,48;UBERON:0002405,3.35e-07,48;UBERON:0001004,9.67e-07,42|phase1_expression=0,0,0,0,0,0,0,1.42035655785734,0.84473233291,0.70219357896598,0.171217968225505,0,1.88320802924326,2.18551006047494,0,0.202475267389826,0,0.946386496074713,0.959801035240171,1.27316895539409,0.0850432901510698,0.397163804803541,0.783599367416806,0,0,0,0,0,0.190023419456374,0,0.221730510655305,0,0,0,0,0,0.204169356262369,9.62622750694888,10.1573594788094,7.32933241563318,19.9998705930545,8.19654581950135,14.5653105909346,0,0,0,0,0,0,0,0,0,2.68452169692378,0,1.34437519656986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0.869593466105033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,3.6251303710604,0.148442139064825,0.173485326766136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255457055208591,0.359445373517761,0.599902730993408,0.508280908292259,0,0,0,0,0,0,0,0,0.124406970610093,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257347907114715,0.568326998791185,0.207125772535502,0,0.180062061461015,0,0,0.154267112887378,0,0,0.467061369468678,0,0,0,0.146199987425332,0,0.134206418760372,0,0,0,0.793351699990633,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0.193952487167626,0.140271639780637,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0.167506257441816,0.238043640886014,0.195133647857799,0,0,0.478364305972461,0.163863314715738,0.172684981865896,0,0,0,0.491764273019036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325773918707152,0,0,0,0,0,0,0,0,0.363533729477506,0,0,0,0,0,0,0.129358683782755,0,0,0,0,0.304464949114599,0.23467170806371,0,0,0,0.161464426695906,0,0,0,0,0,0.341741761595705,0,0.185194527369712,0.376736914009382,0.410082683163076,0.686334519619568,1.01987057996313,0.69975726161829,0.690999869022119,0,0,0,0,0,0,0,0,0,0.129614973291793,1.24267862617385,0,0,0,0,0,0,0,0,0,0,0,0.948033361884535,0.810900861160657,0.410843828659309,0.129920822977795,0.537080087002444,0.79472541912506,0.841368146639782,1.32920574457119,2.01932899896295,2.13379058634,1.10908803650525,0.487289403698762,2.02044867444692,1.75315353272353,0.226730383615211,0,0,0,0,0.187682475451182,0.549454872801795,0,0,0,0.920650473014354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25347929989024,0.188626341386076,0,0,0.114870937911227,0,0,0.192909220463705,0,0,0,0,0,0,0.188218760830661,0,0,0,0.135804113845862,0,0,0.0985044823755635,0,0.154936841185966,0,0,0,0.214871054048298,0.191288332068843,0,0|short_description=p@chr11:82891660..82891684,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=3 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr11:82891660..82891684,- | |||
|id=chr11:82891660..82891684,- | |||
|ontology_enrichment_celltype=CL:0000838!6.66e-08!12;CL:0000988!1.69e-07!32;CL:0002032!1.69e-07!32;CL:0000037!1.69e-07!32;CL:0000566!1.69e-07!32;CL:0000837!1.69e-07!32;CL:0000542!4.58e-07!13;CL:0000051!4.58e-07!13;CL:0000084!6.36e-07!11;CL:0000827!6.36e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.11e-08,12;CL:0000542,5.36e-08,13;CL:0000051,5.36e-08,13;CL:0000791,1.22e-07,9;CL:0000789,1.22e-07,9;CL:0002420,1.22e-07,9;CL:0002419,1.22e-07,9;CL:0000790,1.22e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,2.69e-14,3;DOID:4045,2.69e-14,3;DOID:0050686,2.26e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0004177!9.28e-16!29;UBERON:0003408!3.20e-14!24;UBERON:0006562!6.92e-14!24;UBERON:0001557!6.92e-14!24;UBERON:0001042!6.92e-14!24;UBERON:0008814!6.92e-14!24;UBERON:0009145!6.92e-14!24;UBERON:0002390!1.22e-13!45;UBERON:0003061!1.22e-13!45;UBERON:0002193!1.76e-13!48;UBERON:0002370!2.69e-13!23;UBERON:0000974!2.69e-13!23;UBERON:0004807!2.69e-13!23;UBERON:0005058!2.69e-13!23;UBERON:0003351!2.69e-13!23;UBERON:0009113!2.69e-13!23;UBERON:0003295!2.69e-13!23;UBERON:0009722!2.69e-13!23;UBERON:0005562!2.69e-13!23;UBERON:0007690!2.69e-13!23;UBERON:0001004!8.10e-12!42;UBERON:0000072!1.44e-11!27;UBERON:0000065!4.76e-11!41;UBERON:0000063!2.35e-08!35;UBERON:0002405!1.32e-07!70;UBERON:0003081!2.04e-07!88;UBERON:0005057!3.54e-07!51 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003408,9.31e-13,24;UBERON:0002370,1.25e-10,23;UBERON:0000974,1.25e-10,23;UBERON:0004807,1.25e-10,23;UBERON:0005058,1.25e-10,23;UBERON:0003351,1.25e-10,23;UBERON:0009113,1.25e-10,23;UBERON:0003295,1.25e-10,23;UBERON:0009722,1.25e-10,23;UBERON:0005562,1.25e-10,23;UBERON:0007690,1.25e-10,23;UBERON:0006562,3.83e-10,24;UBERON:0001557,3.83e-10,24;UBERON:0001042,3.83e-10,24;UBERON:0008814,3.83e-10,24;UBERON:0009145,3.83e-10,24;UBERON:0000072,6.68e-09,27;UBERON:0004177,3.24e-08,29;UBERON:0005057,3.24e-08,29;UBERON:0007811,4.45e-08,36;UBERON:0002193,3.35e-07,48;UBERON:0002405,3.35e-07,48;UBERON:0001004,9.67e-07,42 | |||
|phase1_expression=0,0,0,0,0,0,0,1.42035655785734,0.84473233291,0.70219357896598,0.171217968225505,0,1.88320802924326,2.18551006047494,0,0.202475267389826,0,0.946386496074713,0.959801035240171,1.27316895539409,0.0850432901510698,0.397163804803541,0.783599367416806,0,0,0,0,0,0.190023419456374,0,0.221730510655305,0,0,0,0,0,0.204169356262369,9.62622750694888,10.1573594788094,7.32933241563318,19.9998705930545,8.19654581950135,14.5653105909346,0,0,0,0,0,0,0,0,0,2.68452169692378,0,1.34437519656986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0.869593466105033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,3.6251303710604,0.148442139064825,0.173485326766136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255457055208591,0.359445373517761,0.599902730993408,0.508280908292259,0,0,0,0,0,0,0,0,0.124406970610093,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257347907114715,0.568326998791185,0.207125772535502,0,0.180062061461015,0,0,0.154267112887378,0,0,0.467061369468678,0,0,0,0.146199987425332,0,0.134206418760372,0,0,0,0.793351699990633,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0.193952487167626,0.140271639780637,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0.167506257441816,0.238043640886014,0.195133647857799,0,0,0.478364305972461,0.163863314715738,0.172684981865896,0,0,0,0.491764273019036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325773918707152,0,0,0,0,0,0,0,0,0.363533729477506,0,0,0,0,0,0,0.129358683782755,0,0,0,0,0.304464949114599,0.23467170806371,0,0,0,0.161464426695906,0,0,0,0,0,0.341741761595705,0,0.185194527369712,0.376736914009382,0.410082683163076,0.686334519619568,1.01987057996313,0.69975726161829,0.690999869022119,0,0,0,0,0,0,0,0,0,0.129614973291793,1.24267862617385,0,0,0,0,0,0,0,0,0,0,0,0.948033361884535,0.810900861160657,0.410843828659309,0.129920822977795,0.537080087002444,0.79472541912506,0.841368146639782,1.32920574457119,2.01932899896295,2.13379058634,1.10908803650525,0.487289403698762,2.02044867444692,1.75315353272353,0.226730383615211,0,0,0,0,0.187682475451182,0.549454872801795,0,0,0,0.920650473014354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25347929989024,0.188626341386076,0,0,0.114870937911227,0,0,0.192909220463705,0,0,0,0,0,0,0.188218760830661,0,0,0,0.135804113845862,0,0,0.0985044823755635,0,0.154936841185966,0,0,0,0.214871054048298,0.191288332068843,0,0 | |||
|short_description=p@chr11:82891660..82891684,- | |||
}} |
Revision as of 21:10, 12 September 2013
Short description: | p@chr11:82891660..82891684, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:82891660..82891684, - |
Coexpression cluster: | MCL_coexpression_mm9:3 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.11e-08 | 12 |
lymphocyte | 5.36e-08 | 13 |
common lymphoid progenitor | 5.36e-08 | 13 |
mature alpha-beta T cell | 1.22e-07 | 9 |
alpha-beta T cell | 1.22e-07 | 9 |
immature T cell | 1.22e-07 | 9 |
mature T cell | 1.22e-07 | 9 |
immature alpha-beta T cell | 1.22e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
gland of gut | 9.31e-13 | 24 |
thymus | 1.25e-10 | 23 |
neck | 1.25e-10 | 23 |
respiratory system epithelium | 1.25e-10 | 23 |
hemolymphoid system gland | 1.25e-10 | 23 |
pharyngeal epithelium | 1.25e-10 | 23 |
thymic region | 1.25e-10 | 23 |
pharyngeal gland | 1.25e-10 | 23 |
entire pharyngeal arch endoderm | 1.25e-10 | 23 |
thymus primordium | 1.25e-10 | 23 |
early pharyngeal endoderm | 1.25e-10 | 23 |
pharynx | 3.83e-10 | 24 |
upper respiratory tract | 3.83e-10 | 24 |
chordate pharynx | 3.83e-10 | 24 |
pharyngeal arch system | 3.83e-10 | 24 |
pharyngeal region of foregut | 3.83e-10 | 24 |
segment of respiratory tract | 6.68e-09 | 27 |
hemopoietic organ | 3.24e-08 | 29 |
immune organ | 3.24e-08 | 29 |
craniocervical region | 4.45e-08 | 36 |
hemolymphoid system | 3.35e-07 | 48 |
immune system | 3.35e-07 | 48 |
respiratory system | 9.67e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 2.69e-14 | 3 |
muscle cancer | 2.69e-14 | 3 |
organ system cancer | 2.26e-07 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.