FFCP PHASE1:Mm9::chr13:24298150..24298164,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=68732|HGNC=|MCL_coexpression_id=18|UniProt=E9Q7X4|association_with_transcript=0bp_to_ENSMUST00000123076_5end|description=CAGE_peak_7_at_Lrrc16a_5end|id=chr13:24298150..24298164,-|ontology_enrichment_celltype=CL:0000553!2.94e-11!6;CL:0000556!2.94e-11!6;CL:0000050!3.97e-07!9|ontology_enrichment_celltype_v019_2=CL:0000553,5.69e-22,6;CL:0000556,5.69e-22,6;CL:0000050,8.80e-15,9;CL:0000839,2.47e-10,13;CL:0000945,2.09e-09,1;CL:0000236,2.09e-09,1;CL:0000826,2.09e-09,1;CL:0000763,1.90e-08,16;CL:0002031,3.55e-08,25;CL:0000049,3.77e-07,19|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!5.15e-10!48;UBERON:0002405!3.21e-09!70;UBERON:0002106!1.27e-07!6;UBERON:0004457!1.27e-07!6;UBERON:0000042!1.27e-07!6;UBERON:0004854!1.27e-07!6;UBERON:0009034!1.27e-07!6;UBERON:0002095!1.27e-07!6;UBERON:0004782!1.27e-07!6;UBERON:0003281!1.27e-07!6;UBERON:0009664!1.27e-07!6;UBERON:0002296!1.27e-07!6;UBERON:0005602!1.27e-07!6;UBERON:0001179!1.27e-07!6;UBERON:0006293!1.27e-07!6;UBERON:0002390!1.47e-07!45;UBERON:0003061!1.47e-07!45|ontology_enrichment_uberon_v019_2=UBERON:0002106,3.14e-21,6;UBERON:0004457,3.14e-21,6;UBERON:0000042,3.14e-21,6;UBERON:0004854,3.14e-21,6;UBERON:0009034,3.14e-21,6;UBERON:0002095,3.14e-21,6;UBERON:0004782,3.14e-21,6;UBERON:0003281,3.14e-21,6;UBERON:0009664,3.14e-21,6;UBERON:0002296,3.14e-21,6;UBERON:0005602,3.14e-21,6;UBERON:0001179,3.14e-21,6;UBERON:0006293,3.14e-21,6;UBERON:0002193,6.24e-13,48;UBERON:0002405,6.24e-13,48;UBERON:0003887,6.72e-13,10;UBERON:0002390,7.18e-11,45;UBERON:0003061,7.18e-11,45;UBERON:0000029,1.44e-09,1;UBERON:0001097,1.44e-09,1;UBERON:0003968,1.44e-09,1;UBERON:0001467,1.44e-09,1;UBERON:0002371,1.90e-08,16;UBERON:0000945,3.55e-08,16;UBERON:0010039,3.55e-08,16;UBERON:0002075,6.33e-07,19|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.999329285446988,1.01237633694913,0.699561878128147,9.77932712610537,12.3402990245165,5.94145512517242,0.255129870453209,0.0992909512008853,0,0.319984845586813,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.20126078778983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153606533256243,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.02707439306232,0,0,0,0,0,0,0,0,0.289198713839823,0,0,0.220841518460394,0.969750506270444,0,0,0.209446706813455,0,0.11981512450592,0,0.127070227073065,0,0,0,0,0,0,0,0,0.373220911830279,0,0,0.130120442962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16455984991348,0,0,0,0.439100230582101,0,0.210289948564127,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0.372140947668503,0.312037673114561,0.252578877947112,0,0.482443521363367,0.739012760666419,0,0,0,0,0,0,0,0.157635144106191,0,0.159454768657487,0.655453258862952,0.690739927463582,0.578596234326046,0,0,0.491764273019036,0.551873492609465,0,0,0,0,0,0,0,0,0,0,0,0,0,3.53453448063988,0,0,0,0,0,0,0,0,0,0,0,0,0.356497378384721,0.316036757935816,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16488625294148,0,0,0,0,0,0,3.41741761595705,0,0.370389054739423,1.88368457004691,3.55404992074665,3.66045077130436,0,0,0,0,0,0,0,0,0,0,0,0,0,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179026695667481,0,0,0.147689527174577,0.302899349844443,0.15241361331,0,0.0974578807397524,0.288635524920988,0.350630706544707,0,0,0,0,0.19318959403219,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p7@Lrrc16a}} | ||
|EntrezGene=68732 | |||
|HGNC= | |||
|MCL_coexpression_id=18 | |||
|UniProt=E9Q7X4 | |||
|association_with_transcript=0bp_to_ENSMUST00000123076_5end | |||
|description=CAGE_peak_7_at_Lrrc16a_5end | |||
|id=chr13:24298150..24298164,- | |||
|ontology_enrichment_celltype=CL:0000553!2.94e-11!6;CL:0000556!2.94e-11!6;CL:0000050!3.97e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000553,5.69e-22,6;CL:0000556,5.69e-22,6;CL:0000050,8.80e-15,9;CL:0000839,2.47e-10,13;CL:0000945,2.09e-09,1;CL:0000236,2.09e-09,1;CL:0000826,2.09e-09,1;CL:0000763,1.90e-08,16;CL:0002031,3.55e-08,25;CL:0000049,3.77e-07,19 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!5.15e-10!48;UBERON:0002405!3.21e-09!70;UBERON:0002106!1.27e-07!6;UBERON:0004457!1.27e-07!6;UBERON:0000042!1.27e-07!6;UBERON:0004854!1.27e-07!6;UBERON:0009034!1.27e-07!6;UBERON:0002095!1.27e-07!6;UBERON:0004782!1.27e-07!6;UBERON:0003281!1.27e-07!6;UBERON:0009664!1.27e-07!6;UBERON:0002296!1.27e-07!6;UBERON:0005602!1.27e-07!6;UBERON:0001179!1.27e-07!6;UBERON:0006293!1.27e-07!6;UBERON:0002390!1.47e-07!45;UBERON:0003061!1.47e-07!45 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,3.14e-21,6;UBERON:0004457,3.14e-21,6;UBERON:0000042,3.14e-21,6;UBERON:0004854,3.14e-21,6;UBERON:0009034,3.14e-21,6;UBERON:0002095,3.14e-21,6;UBERON:0004782,3.14e-21,6;UBERON:0003281,3.14e-21,6;UBERON:0009664,3.14e-21,6;UBERON:0002296,3.14e-21,6;UBERON:0005602,3.14e-21,6;UBERON:0001179,3.14e-21,6;UBERON:0006293,3.14e-21,6;UBERON:0002193,6.24e-13,48;UBERON:0002405,6.24e-13,48;UBERON:0003887,6.72e-13,10;UBERON:0002390,7.18e-11,45;UBERON:0003061,7.18e-11,45;UBERON:0000029,1.44e-09,1;UBERON:0001097,1.44e-09,1;UBERON:0003968,1.44e-09,1;UBERON:0001467,1.44e-09,1;UBERON:0002371,1.90e-08,16;UBERON:0000945,3.55e-08,16;UBERON:0010039,3.55e-08,16;UBERON:0002075,6.33e-07,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.999329285446988,1.01237633694913,0.699561878128147,9.77932712610537,12.3402990245165,5.94145512517242,0.255129870453209,0.0992909512008853,0,0.319984845586813,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.20126078778983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153606533256243,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.02707439306232,0,0,0,0,0,0,0,0,0.289198713839823,0,0,0.220841518460394,0.969750506270444,0,0,0.209446706813455,0,0.11981512450592,0,0.127070227073065,0,0,0,0,0,0,0,0,0.373220911830279,0,0,0.130120442962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16455984991348,0,0,0,0.439100230582101,0,0.210289948564127,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0.372140947668503,0.312037673114561,0.252578877947112,0,0.482443521363367,0.739012760666419,0,0,0,0,0,0,0,0.157635144106191,0,0.159454768657487,0.655453258862952,0.690739927463582,0.578596234326046,0,0,0.491764273019036,0.551873492609465,0,0,0,0,0,0,0,0,0,0,0,0,0,3.53453448063988,0,0,0,0,0,0,0,0,0,0,0,0,0.356497378384721,0.316036757935816,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16488625294148,0,0,0,0,0,0,3.41741761595705,0,0.370389054739423,1.88368457004691,3.55404992074665,3.66045077130436,0,0,0,0,0,0,0,0,0,0,0,0,0,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179026695667481,0,0,0.147689527174577,0.302899349844443,0.15241361331,0,0.0974578807397524,0.288635524920988,0.350630706544707,0,0,0,0,0.19318959403219,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p7@Lrrc16a | |||
}} |
Revision as of 00:11, 13 September 2013
Short description: | p7@Lrrc16a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Lrrc16a_5end |
Coexpression cluster: | MCL_coexpression_mm9:18 |
Association with transcript: | 0bp_to_ENSMUST00000123076_5end |
EntrezGene: | Lrrc16a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
megakaryocyte progenitor cell | 5.69e-22 | 6 |
megakaryocyte | 5.69e-22 | 6 |
megakaryocyte-erythroid progenitor cell | 8.80e-15 | 9 |
myeloid lineage restricted progenitor cell | 2.47e-10 | 13 |
lymphocyte of B lineage | 2.09e-09 | 1 |
B cell | 2.09e-09 | 1 |
pro-B cell | 2.09e-09 | 1 |
myeloid cell | 1.90e-08 | 16 |
hematopoietic lineage restricted progenitor cell | 3.55e-08 | 25 |
common myeloid progenitor | 3.77e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
spleen | 3.14e-21 | 6 |
cavity lining | 3.14e-21 | 6 |
serous membrane | 3.14e-21 | 6 |
gastrointestinal system mesentery | 3.14e-21 | 6 |
stomach region | 3.14e-21 | 6 |
mesentery | 3.14e-21 | 6 |
gastrointestinal system serosa | 3.14e-21 | 6 |
mesentery of stomach | 3.14e-21 | 6 |
gut mesentery | 3.14e-21 | 6 |
dorsal mesentery | 3.14e-21 | 6 |
dorsal mesogastrium | 3.14e-21 | 6 |
peritoneal cavity | 3.14e-21 | 6 |
spleen primordium | 3.14e-21 | 6 |
hemolymphoid system | 6.24e-13 | 48 |
immune system | 6.24e-13 | 48 |
intraembryonic coelom | 6.72e-13 | 10 |
hematopoietic system | 7.18e-11 | 45 |
blood island | 7.18e-11 | 45 |
lymph node | 1.44e-09 | 1 |
axillary lymph node | 1.44e-09 | 1 |
peripheral lymph node | 1.44e-09 | 1 |
shoulder | 1.44e-09 | 1 |
bone marrow | 1.90e-08 | 16 |
stomach | 3.55e-08 | 16 |
food storage organ | 3.55e-08 | 16 |
viscus | 6.33e-07 | 19 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.