FFCP PHASE1:Mm9::chr17:64950735..64950755,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=17158|HGNC=|UniProt=P27046,Q8C4L1|association_with_transcript=-233bp_to_NM_008549,uc008dfy.1,uc012awd.1_5end|description=CAGE_peak_8_at_Man2a1_5end|id=chr17:64950735..64950755,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000791,9.25e-08,9;CL:0000789,9.25e-08,9;CL:0002420,9.25e-08,9;CL:0002419,9.25e-08,9;CL:0000790,9.25e-08,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003104!1.90e-11!131;UBERON:0009142!1.90e-11!131;UBERON:0004119!4.38e-10!130;UBERON:0000925!4.38e-10!130;UBERON:0006595!4.38e-10!130;UBERON:0001007!5.71e-10!128;UBERON:0001555!5.71e-10!128;UBERON:0007026!5.71e-10!128;UBERON:0004921!1.12e-09!126;UBERON:0004185!1.12e-09!126;UBERON:0000926!3.27e-08!193;UBERON:0004120!3.27e-08!193;UBERON:0006603!3.27e-08!193;UBERON:0000490!3.98e-08!66;UBERON:0005911!5.08e-08!69;UBERON:0001041!1.54e-07!92;UBERON:0005057!2.54e-07!51;UBERON:0000077!4.04e-07!97;UBERON:0003929!9.48e-07!55|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.74e-12,23;UBERON:0000974,1.74e-12,23;UBERON:0004807,1.74e-12,23;UBERON:0005058,1.74e-12,23;UBERON:0003351,1.74e-12,23;UBERON:0009113,1.74e-12,23;UBERON:0003295,1.74e-12,23;UBERON:0009722,1.74e-12,23;UBERON:0005562,1.74e-12,23;UBERON:0007690,1.74e-12,23;UBERON:0000077,2.04e-12,35;UBERON:0006562,7.16e-12,24;UBERON:0003408,7.16e-12,24;UBERON:0001557,7.16e-12,24;UBERON:0001042,7.16e-12,24;UBERON:0008814,7.16e-12,24;UBERON:0009145,7.16e-12,24;UBERON:0004177,3.12e-11,29;UBERON:0005057,3.12e-11,29;UBERON:0002193,5.10e-11,48;UBERON:0002405,5.10e-11,48;UBERON:0000490,7.65e-11,66;UBERON:0002390,2.06e-10,45;UBERON:0003061,2.06e-10,45;UBERON:0000072,2.65e-10,27;UBERON:0003929,4.43e-08,55;UBERON:0000949,2.90e-07,72;UBERON:0007811,3.52e-07,36;UBERON:0002368,3.84e-07,60;UBERON:0003081,4.41e-07,87|phase1_expression=0,0.348975407639361,0.454999239389536,0.60492842261366,0.500895729946347,0.33575854382378,0.233612640595526,2.45334314538995,0.563154888606667,1.40438715793196,0,0.159544317990673,2.9104124088305,2.44777126773193,0.666219523631325,0,0,1.10411757875383,2.87940310572051,1.27316895539409,0.17008658030214,0.0992909512008853,0,0.159992422793407,0.45881856213434,1.14846392823004,0,0.215471232685889,0.570070258369122,0.504060259519861,0.221730510655305,0,0,0,0,0.166234645358492,0,1.25559489221072,3.1253413780952,0,1.76469446409304,1.36609096991689,1.94204141212461,1.00717454380462,0.405507724878058,0.183546752161682,0,0,0,0,0,0,0.838913030288682,0.725362142011344,1.34437519656986,0.514518872071894,0.286533439938757,1.54701627683233,0,0,0,0,0,0,0,0,0,0,0,0.135005938331691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151452386666368,0.151143120213571,4.92769630792852,2.58127163094416,0,0,1.29955283489534,0.448026887097336,0.140444420131752,0,0,0,0,0,0,0,0,0.506719730950197,0,0.34255163915718,1.29468941823586,0.445326417194474,0.173485326766136,0.608930956624282,0.230615497256059,0.452167921657868,0.705532242814229,0.125666591329675,0,0.433798070759735,0,0.323533699894818,0.220841518460394,0.484875253135222,0,0,0.209446706813455,0.766371165625774,0.11981512450592,0,0.127070227073065,0,0.457500602818626,0.125654352112864,0,0,0,0,0.407357455401265,0.373220911830279,0.252722758433675,0,0,0.229902104433473,0,0,0.136072998302656,0,0,0,0,0,0,0,0,0.348252166522167,0.205782136407943,0,0,0,0,0,0,0.180062061461015,0,0,0.308534225774757,0,0.268273401399619,0,0.329119699826961,0.32833492815819,0.162137619091711,0.438599962275997,0,0.402619256281115,0,0,0.660837565967596,0.264450566663544,0.213288250535234,0,0,0,0,0.190225626112559,0,0.164698954724011,0.754005626400808,0.397912944082302,0.58489226135736,0.898819408654221,0.216138049874694,1.39398891278057,0.379335801906163,0,0,0,0.387904974335251,0.280543279561274,0.316182685621286,0.147610147979602,0.627994911365499,0.246794327843601,0.592905254174298,0,0,0,0,0.72353147925725,0.763877555344259,0.575392274901621,0.972811360650212,0.274561413188081,0,0,0,1.01031551178845,0.358794827043824,0.482443521363367,0.184753190166605,0.37898282354097,0,0.509235257325564,0.234690248288502,0,0.476087281772027,0.975668239288994,0,0.44292937929755,0.318909537314974,0.655453258862952,0.172684981865896,0.578596234326046,0,0.54390568381871,0.491764273019036,0,0,0,0.327869890753351,0.504941854408746,0,0,0,0.238968797952552,0,0,0,0,0,0,0,0,0.325773918707152,0.164970122972535,1.32745138339963,0.242780636154981,0,0.754420319023592,0.295301892880773,0,0.516856586336442,0.727067458955011,1.06949213515416,0.316036757935816,0,0,0.680879211507576,0,0,0,0,0,0,0.304464949114599,0,1.0591603543191,0.220528398054962,0,0,0,0,0.164140899745061,0.291480836629851,0.18542530201051,0.683483523191411,0.206386867963223,0.370389054739423,0.188368457004691,0.27338845544205,1.14389086603261,0,0,0,0,0,0,0,0,0,0.269728692769641,0.495920734352016,0.26175594198403,0.129614973291793,0.621339313086926,0,0.149516546043979,0.165458490457098,0,0.129159823477731,0,0,0,0.209718688851422,0.241584120826006,0.288030006257865,0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| ||
|EntrezGene=17158 | |||
|HGNC= | |||
|UniProt=P27046,Q8C4L1 | |||
|association_with_transcript=-233bp_to_NM_008549,uc008dfy.1,uc012awd.1_5end | |||
|description=CAGE_peak_8_at_Man2a1_5end | |||
|id=chr17:64950735..64950755,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,9.25e-08,9;CL:0000789,9.25e-08,9;CL:0002420,9.25e-08,9;CL:0002419,9.25e-08,9;CL:0000790,9.25e-08,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!1.90e-11!131;UBERON:0009142!1.90e-11!131;UBERON:0004119!4.38e-10!130;UBERON:0000925!4.38e-10!130;UBERON:0006595!4.38e-10!130;UBERON:0001007!5.71e-10!128;UBERON:0001555!5.71e-10!128;UBERON:0007026!5.71e-10!128;UBERON:0004921!1.12e-09!126;UBERON:0004185!1.12e-09!126;UBERON:0000926!3.27e-08!193;UBERON:0004120!3.27e-08!193;UBERON:0006603!3.27e-08!193;UBERON:0000490!3.98e-08!66;UBERON:0005911!5.08e-08!69;UBERON:0001041!1.54e-07!92;UBERON:0005057!2.54e-07!51;UBERON:0000077!4.04e-07!97;UBERON:0003929!9.48e-07!55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.74e-12,23;UBERON:0000974,1.74e-12,23;UBERON:0004807,1.74e-12,23;UBERON:0005058,1.74e-12,23;UBERON:0003351,1.74e-12,23;UBERON:0009113,1.74e-12,23;UBERON:0003295,1.74e-12,23;UBERON:0009722,1.74e-12,23;UBERON:0005562,1.74e-12,23;UBERON:0007690,1.74e-12,23;UBERON:0000077,2.04e-12,35;UBERON:0006562,7.16e-12,24;UBERON:0003408,7.16e-12,24;UBERON:0001557,7.16e-12,24;UBERON:0001042,7.16e-12,24;UBERON:0008814,7.16e-12,24;UBERON:0009145,7.16e-12,24;UBERON:0004177,3.12e-11,29;UBERON:0005057,3.12e-11,29;UBERON:0002193,5.10e-11,48;UBERON:0002405,5.10e-11,48;UBERON:0000490,7.65e-11,66;UBERON:0002390,2.06e-10,45;UBERON:0003061,2.06e-10,45;UBERON:0000072,2.65e-10,27;UBERON:0003929,4.43e-08,55;UBERON:0000949,2.90e-07,72;UBERON:0007811,3.52e-07,36;UBERON:0002368,3.84e-07,60;UBERON:0003081,4.41e-07,87 | |||
|phase1_expression=0,0.348975407639361,0.454999239389536,0.60492842261366,0.500895729946347,0.33575854382378,0.233612640595526,2.45334314538995,0.563154888606667,1.40438715793196,0,0.159544317990673,2.9104124088305,2.44777126773193,0.666219523631325,0,0,1.10411757875383,2.87940310572051,1.27316895539409,0.17008658030214,0.0992909512008853,0,0.159992422793407,0.45881856213434,1.14846392823004,0,0.215471232685889,0.570070258369122,0.504060259519861,0.221730510655305,0,0,0,0,0.166234645358492,0,1.25559489221072,3.1253413780952,0,1.76469446409304,1.36609096991689,1.94204141212461,1.00717454380462,0.405507724878058,0.183546752161682,0,0,0,0,0,0,0.838913030288682,0.725362142011344,1.34437519656986,0.514518872071894,0.286533439938757,1.54701627683233,0,0,0,0,0,0,0,0,0,0,0,0.135005938331691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151452386666368,0.151143120213571,4.92769630792852,2.58127163094416,0,0,1.29955283489534,0.448026887097336,0.140444420131752,0,0,0,0,0,0,0,0,0.506719730950197,0,0.34255163915718,1.29468941823586,0.445326417194474,0.173485326766136,0.608930956624282,0.230615497256059,0.452167921657868,0.705532242814229,0.125666591329675,0,0.433798070759735,0,0.323533699894818,0.220841518460394,0.484875253135222,0,0,0.209446706813455,0.766371165625774,0.11981512450592,0,0.127070227073065,0,0.457500602818626,0.125654352112864,0,0,0,0,0.407357455401265,0.373220911830279,0.252722758433675,0,0,0.229902104433473,0,0,0.136072998302656,0,0,0,0,0,0,0,0,0.348252166522167,0.205782136407943,0,0,0,0,0,0,0.180062061461015,0,0,0.308534225774757,0,0.268273401399619,0,0.329119699826961,0.32833492815819,0.162137619091711,0.438599962275997,0,0.402619256281115,0,0,0.660837565967596,0.264450566663544,0.213288250535234,0,0,0,0,0.190225626112559,0,0.164698954724011,0.754005626400808,0.397912944082302,0.58489226135736,0.898819408654221,0.216138049874694,1.39398891278057,0.379335801906163,0,0,0,0.387904974335251,0.280543279561274,0.316182685621286,0.147610147979602,0.627994911365499,0.246794327843601,0.592905254174298,0,0,0,0,0.72353147925725,0.763877555344259,0.575392274901621,0.972811360650212,0.274561413188081,0,0,0,1.01031551178845,0.358794827043824,0.482443521363367,0.184753190166605,0.37898282354097,0,0.509235257325564,0.234690248288502,0,0.476087281772027,0.975668239288994,0,0.44292937929755,0.318909537314974,0.655453258862952,0.172684981865896,0.578596234326046,0,0.54390568381871,0.491764273019036,0,0,0,0.327869890753351,0.504941854408746,0,0,0,0.238968797952552,0,0,0,0,0,0,0,0,0.325773918707152,0.164970122972535,1.32745138339963,0.242780636154981,0,0.754420319023592,0.295301892880773,0,0.516856586336442,0.727067458955011,1.06949213515416,0.316036757935816,0,0,0.680879211507576,0,0,0,0,0,0,0.304464949114599,0,1.0591603543191,0.220528398054962,0,0,0,0,0.164140899745061,0.291480836629851,0.18542530201051,0.683483523191411,0.206386867963223,0.370389054739423,0.188368457004691,0.27338845544205,1.14389086603261,0,0,0,0,0,0,0,0,0,0.269728692769641,0.495920734352016,0.26175594198403,0.129614973291793,0.621339313086926,0,0.149516546043979,0.165458490457098,0,0.129159823477731,0,0,0,0.209718688851422,0.241584120826006,0.288030006257865,0.948033361884535,0,0.102710957164827,0.129920822977795,0.358053391334963,0.596044064343795,1.9231271923195,1.03382669022204,1.71642964911851,1.37172251979,1.10908803650525,1.46186821109629,1.82802499116626,2.92192255453922,0,0,0,0,0,0.375364950902364,0,0,0.501572104035363,0,0,0,0.343706364687375,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0,0.222246727801615,0,0,0.252697211763798,0,0.188626341386076,0.187283014939765,0.128050304809739,0,0.476293691283074,0.115884325944855,0.192909220463705,0,0.294397840268795,0,0.177475806159338,0.715308569841963,0.290692833264657,0.282328141245992,0.169229215783353,0.548783918618318,0,0.543216455383447,0,0.237270036248348,0.0985044823755635,0,0,0,0,0,0.214871054048298,0.191288332068843,0,0.231867835620421 | |||
|short_description=p8@Man2a1 | |||
}} |
Revision as of 15:07, 13 September 2013
Short description: | p8@Man2a1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Man2a1_5end |
Coexpression cluster: | NA |
Association with transcript: | -233bp_to_NM_008549, uc008dfy.1, uc012awd.1_5end |
EntrezGene: | Man2a1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 9.25e-08 | 9 |
alpha-beta T cell | 9.25e-08 | 9 |
immature T cell | 9.25e-08 | 9 |
mature T cell | 9.25e-08 | 9 |
immature alpha-beta T cell | 9.25e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.74e-12 | 23 |
neck | 1.74e-12 | 23 |
respiratory system epithelium | 1.74e-12 | 23 |
hemolymphoid system gland | 1.74e-12 | 23 |
pharyngeal epithelium | 1.74e-12 | 23 |
thymic region | 1.74e-12 | 23 |
pharyngeal gland | 1.74e-12 | 23 |
entire pharyngeal arch endoderm | 1.74e-12 | 23 |
thymus primordium | 1.74e-12 | 23 |
early pharyngeal endoderm | 1.74e-12 | 23 |
mixed endoderm/mesoderm-derived structure | 2.04e-12 | 35 |
pharynx | 7.16e-12 | 24 |
gland of gut | 7.16e-12 | 24 |
upper respiratory tract | 7.16e-12 | 24 |
chordate pharynx | 7.16e-12 | 24 |
pharyngeal arch system | 7.16e-12 | 24 |
pharyngeal region of foregut | 7.16e-12 | 24 |
hemopoietic organ | 3.12e-11 | 29 |
immune organ | 3.12e-11 | 29 |
hemolymphoid system | 5.10e-11 | 48 |
immune system | 5.10e-11 | 48 |
unilaminar epithelium | 7.65e-11 | 66 |
hematopoietic system | 2.06e-10 | 45 |
blood island | 2.06e-10 | 45 |
segment of respiratory tract | 2.65e-10 | 27 |
gut epithelium | 4.43e-08 | 55 |
endocrine system | 2.90e-07 | 72 |
craniocervical region | 3.52e-07 | 36 |
endocrine gland | 3.84e-07 | 60 |
lateral plate mesoderm | 4.41e-07 | 87 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.