FFCP PHASE1:Hg19::chr6:24667055..24667064,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=51567|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17768|TSSclassifier=S|UniProt=|association_with_transcript=-41bp_to_ENST00000480495_5end|description=CAGE_peak_6_at_TDP2_5end|id=chr6:24667055..24667064,-|ontology_enrichment_celltype=CL:0000766!2.27e-16!76;CL:0000763!6.97e-15!112;CL:0000049!6.97e-15!112;CL:0000839!1.84e-13!70;CL:0002032!6.30e-13!165;CL:0000837!6.30e-13!165;CL:0000738!7.79e-13!140;CL:0000557!1.11e-12!71;CL:0000037!4.98e-12!172;CL:0000566!4.98e-12!172;CL:0002194!5.35e-12!63;CL:0000576!5.35e-12!63;CL:0000040!5.35e-12!63;CL:0000559!5.35e-12!63;CL:0002009!1.64e-11!65;CL:0002031!1.55e-10!124;CL:0000988!2.86e-10!182;CL:0002087!5.42e-09!119;CL:0000860!6.39e-09!45;CL:0002057!4.04e-08!42|ontology_enrichment_celltype_v019=CL:0000473;4.37e-23;39!CL:0000234;4.37e-23;39!CL:0000860;1.42e-17;33!CL:0002057;1.42e-17;33!CL:0000235;2.33e-14;6!CL:0000576;1.48e-12;48!CL:0000766;3.03e-12;69!CL:0000775;2.62e-11;3!CL:0000094;5.56e-11;8!CL:0002619;1.38e-10;3!CL:0000763;1.19e-09;100!CL:0000771;3.04e-08;2!CL:0000081;7.38e-08;11!CL:0000738;1.68e-07;136|ontology_enrichment_celltype_v019_2=CL:0000766,1.41e-39,72;CL:0002194,1.46e-31,59;CL:0000576,1.46e-31,59;CL:0000040,1.46e-31,59;CL:0000559,1.46e-31,59;CL:0000557,1.92e-31,67;CL:0002009,2.63e-30,61;CL:0000839,1.10e-29,66;CL:0000763,8.36e-29,108;CL:0000049,8.36e-29,108;CL:0000473,1.58e-23,48;CL:0000234,1.58e-23,48;CL:0000738,5.08e-17,136;CL:0002032,2.37e-16,161;CL:0000837,2.37e-16,161;CL:0000037,2.67e-15,168;CL:0000860,8.19e-15,42;CL:0002057,8.19e-15,42;CL:0000235,2.93e-14,6;CL:0000988,4.49e-14,177;CL:0002031,3.41e-13,120;CL:0002087,6.35e-13,115;CL:0000775,2.44e-11,3;CL:0000094,5.34e-11,8;CL:0002619,7.28e-11,3;CL:0000771,3.06e-08,2;CL:0000081,7.18e-08,11|ontology_enrichment_development_v019=CL:0002057;7.09e-12;42!CL:0000049;2.45e-11;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!4.68e-13!102;UBERON:0003061!4.68e-13!102;UBERON:0002193!1.24e-10!112;UBERON:0001474!2.84e-10!86;UBERON:0002371!2.87e-10!80;UBERON:0004765!3.71e-10!101;UBERON:0001434!3.71e-10!101;UBERON:0002405!2.56e-07!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.33e-27,76;UBERON:0002390,2.48e-26,98;UBERON:0003061,2.48e-26,98;UBERON:0001474,2.31e-24,82;UBERON:0002193,4.01e-23,108;UBERON:0001434,7.97e-22,100;UBERON:0004765,1.50e-21,90;UBERON:0002405,1.28e-20,93;UBERON:0002204,8.02e-13,167;UBERON:0003081,4.30e-10,203;UBERON:0000926,2.32e-07,315;UBERON:0004120,2.32e-07,315;UBERON:0006603,2.32e-07,315|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0,0,0,0.631719873426831,0,0,0,0.218441372130172,0,0.123766352960047,0.331397375727916,0,0,0,0.487932798790507,0,0.204000691244253,0,0,0.136874425072884,0,0.229240217243854,0.328402357799783,0.157421562627358,0.393364276848904,0.383829398097213,0.619264493264304,0,0.30120591877825,0.369754010166788,0.154934401160603,0,0,0,0,0.217010870715852,1.79132379391939,3.88672399222775,4.63636021741536,1.16318591023652,1.13362783106643,0.727752183563449,1.39457422143411,0.822335776043652,0.929119112685311,0.863077176966451,0.768482119587302,1.41889337933151,1.37898272294647,1.29096936716765,0,1.50593871634084,1.63743690034707,1.57306439111559,3.36692281607993,1.92557416245656,0,1.64925650093358,1.39624560335142,0.426224750532694,1.45104619314292,2.26954089876456,0.622822248995575,1.25624332628372,0,0.434377689410233,0.605399502633369,0.368277635987565,0.632924774881769,0.211255286311942,0,0.209658645508376,0.112328631146495,0.150176892841506,0,0,0.59675003159727,0,0,0,0,0,0,0.574752439954483,0,0.954053754535364,0,0,0,0,1.12101712596307,0.263384084775077,0.196709770113833,0,0.822405995998037,0.668745981562712,0.651844533267181,0,0,0.222820913770347,0.294605907474837,0,0,0.384273959177026,0.260118695119756,0.657751618414705,0.276350017785848,0.289803085735052,0,0.802622484269139,0,0.226618685395132,0.766440987203842,0,0.253019692019503,0.95569624297229,0,0.950452044448374,0.451725357233318,0.76791966692651,0,0.473554504088034,0.821127996921047,0.201606743224732,0.267440195783507,0.434473211648397,0,0,0.383587685530591,0.722878304769133,0.50133791063589,0.434539556882471,0,0,0.189069634328136,0.221729397462564,0.087834785693126,0.392937226493138,0,0,1.29818957461873,1.91542711029194,2.39324328933957,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0.275118041940067,0.208994966536811,0,0,0,0,0,0,0,0,0.17859945656816,0.44905874525234,0.450445921933289,0,0,0.366403487860815,9.22462922052443,7.75560528296651,0,0,0,0.264818361626438,0,0.354668382198357,0.560677600142307,0,0,0.622422070799533,0,0.163461903113459,0,0,0,0.312160076830321,0,0.149448680551801,0.117434498643765,0.161872944368132,0,0.204154171254893,0.245668634623536,0.206651562351531,1.18800285728205,0.741800787835671,0,0,0,0,0,0.877955241761676,0.30648779579902,1.05166641234618,0.113432183160021,0.1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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=51567 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17768 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-41bp_to_ENST00000480495_5end | |||
|description=CAGE_peak_6_at_TDP2_5end | |||
|id=chr6:24667055..24667064,- | |||
|ontology_enrichment_celltype=CL:0000766!2.27e-16!76;CL:0000763!6.97e-15!112;CL:0000049!6.97e-15!112;CL:0000839!1.84e-13!70;CL:0002032!6.30e-13!165;CL:0000837!6.30e-13!165;CL:0000738!7.79e-13!140;CL:0000557!1.11e-12!71;CL:0000037!4.98e-12!172;CL:0000566!4.98e-12!172;CL:0002194!5.35e-12!63;CL:0000576!5.35e-12!63;CL:0000040!5.35e-12!63;CL:0000559!5.35e-12!63;CL:0002009!1.64e-11!65;CL:0002031!1.55e-10!124;CL:0000988!2.86e-10!182;CL:0002087!5.42e-09!119;CL:0000860!6.39e-09!45;CL:0002057!4.04e-08!42 | |||
|ontology_enrichment_celltype_v019=CL:0000473;4.37e-23;39!CL:0000234;4.37e-23;39!CL:0000860;1.42e-17;33!CL:0002057;1.42e-17;33!CL:0000235;2.33e-14;6!CL:0000576;1.48e-12;48!CL:0000766;3.03e-12;69!CL:0000775;2.62e-11;3!CL:0000094;5.56e-11;8!CL:0002619;1.38e-10;3!CL:0000763;1.19e-09;100!CL:0000771;3.04e-08;2!CL:0000081;7.38e-08;11!CL:0000738;1.68e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.41e-39,72;CL:0002194,1.46e-31,59;CL:0000576,1.46e-31,59;CL:0000040,1.46e-31,59;CL:0000559,1.46e-31,59;CL:0000557,1.92e-31,67;CL:0002009,2.63e-30,61;CL:0000839,1.10e-29,66;CL:0000763,8.36e-29,108;CL:0000049,8.36e-29,108;CL:0000473,1.58e-23,48;CL:0000234,1.58e-23,48;CL:0000738,5.08e-17,136;CL:0002032,2.37e-16,161;CL:0000837,2.37e-16,161;CL:0000037,2.67e-15,168;CL:0000860,8.19e-15,42;CL:0002057,8.19e-15,42;CL:0000235,2.93e-14,6;CL:0000988,4.49e-14,177;CL:0002031,3.41e-13,120;CL:0002087,6.35e-13,115;CL:0000775,2.44e-11,3;CL:0000094,5.34e-11,8;CL:0002619,7.28e-11,3;CL:0000771,3.06e-08,2;CL:0000081,7.18e-08,11 | |||
|ontology_enrichment_development_v019=CL:0002057;7.09e-12;42!CL:0000049;2.45e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.68e-13!102;UBERON:0003061!4.68e-13!102;UBERON:0002193!1.24e-10!112;UBERON:0001474!2.84e-10!86;UBERON:0002371!2.87e-10!80;UBERON:0004765!3.71e-10!101;UBERON:0001434!3.71e-10!101;UBERON:0002405!2.56e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.33e-27,76;UBERON:0002390,2.48e-26,98;UBERON:0003061,2.48e-26,98;UBERON:0001474,2.31e-24,82;UBERON:0002193,4.01e-23,108;UBERON:0001434,7.97e-22,100;UBERON:0004765,1.50e-21,90;UBERON:0002405,1.28e-20,93;UBERON:0002204,8.02e-13,167;UBERON:0003081,4.30e-10,203;UBERON:0000926,2.32e-07,315;UBERON:0004120,2.32e-07,315;UBERON:0006603,2.32e-07,315 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0,0,0,0.631719873426831,0,0,0,0.218441372130172,0,0.123766352960047,0.331397375727916,0,0,0,0.487932798790507,0,0.204000691244253,0,0,0.136874425072884,0,0.229240217243854,0.328402357799783,0.157421562627358,0.393364276848904,0.383829398097213,0.619264493264304,0,0.30120591877825,0.369754010166788,0.154934401160603,0,0,0,0,0.217010870715852,1.79132379391939,3.88672399222775,4.63636021741536,1.16318591023652,1.13362783106643,0.727752183563449,1.39457422143411,0.822335776043652,0.929119112685311,0.863077176966451,0.768482119587302,1.41889337933151,1.37898272294647,1.29096936716765,0,1.50593871634084,1.63743690034707,1.57306439111559,3.36692281607993,1.92557416245656,0,1.64925650093358,1.39624560335142,0.426224750532694,1.45104619314292,2.26954089876456,0.622822248995575,1.25624332628372,0,0.434377689410233,0.605399502633369,0.368277635987565,0.632924774881769,0.211255286311942,0,0.209658645508376,0.112328631146495,0.150176892841506,0,0,0.59675003159727,0,0,0,0,0,0,0.574752439954483,0,0.954053754535364,0,0,0,0,1.12101712596307,0.263384084775077,0.196709770113833,0,0.822405995998037,0.668745981562712,0.651844533267181,0,0,0.222820913770347,0.294605907474837,0,0,0.384273959177026,0.260118695119756,0.657751618414705,0.276350017785848,0.289803085735052,0,0.802622484269139,0,0.226618685395132,0.766440987203842,0,0.253019692019503,0.95569624297229,0,0.950452044448374,0.451725357233318,0.76791966692651,0,0.473554504088034,0.821127996921047,0.201606743224732,0.267440195783507,0.434473211648397,0,0,0.383587685530591,0.722878304769133,0.50133791063589,0.434539556882471,0,0,0.189069634328136,0.221729397462564,0.087834785693126,0.392937226493138,0,0,1.29818957461873,1.91542711029194,2.39324328933957,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0.275118041940067,0.208994966536811,0,0,0,0,0,0,0,0,0.17859945656816,0.44905874525234,0.450445921933289,0,0,0.366403487860815,9.22462922052443,7.75560528296651,0,0,0,0.264818361626438,0,0.354668382198357,0.560677600142307,0,0,0.622422070799533,0,0.163461903113459,0,0,0,0.312160076830321,0,0.149448680551801,0.117434498643765,0.161872944368132,0,0.204154171254893,0.245668634623536,0.206651562351531,1.18800285728205,0.741800787835671,0,0,0,0,0,0.877955241761676,0.30648779579902,1.05166641234618,0.113432183160021,0.179389635688862,0.427114777637135,0,0,0.103052529238439,0.257640540045629,0.18611685633159,0,0.389748020644795,0.252433774244115,0.0920498986422993,0,0,0.201504196455281,0.169560592310488,0.386521706326594,0,0,0.121973706129595,0.397589304964456,0.348581828608555,0.310983165046111,0.252320850875628,0,1.56449532329816,0,0,0,0,0.118306800039844,0.337169380156203,0.482022059766964,0.110293972732394,0,0.237270619111097,0.269662616320329,0,0,0,0,0,0,0,0,0,0.441463099414651,0.245976877086227,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0.117408694235822,0.288732895522148,0,0.380508304469197,0,0.858486162094873,4.18568910348575,6.08411089362018,4.01304138179566,0.93733833986777,0,0,0.268675568108545,0,0,0,0.264145302039678,1.03664057770386,0.576479813667846,0.6312121671319,0.063497894292169,0,0,0,0,0,0.285826432630578,0,0,0,0.129271715757778,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0.399891964728228,0,3.01354254859276,2.10833939483032,0,0,0,0.289562613335158,0.61642896765115,0.716243852959582,0.336255431980582,0.197030760201927,0,0.256686072559497,0,2.60279707715243,0.773288812777695,0.502548796003046,0,4.49404214368309,5.9832291840805,5.8018171881045,0.24538298343828,0,0,0,0.178428988797162,0.157702415033935,0.234282829985426,0,0,0,0,0.184369168541703,0.173767228936166,0.195801157462741,0,0.206768026122887,0.215714200818617,0,0,0,0,0,0.153461973288062,0.280660094433074,0.256278298511402,1.53512174720011,0.482561763430822,0,0.616838775210622,0.177561725313127,0.164254312027618,0,0.348631135379878,0.241718899183244,0.601519410909855,0.0920809889358963,0.459257792658427,0.182091168006717,1.04899531967539,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,1.54227252690289,0,0,0,0,0,0.657779629937804,0.784306353074702,0.256450125116389,0,0,0.309123034943167,0.366277859273374,0.330037999682352,0,0.650060246036521,0,0,0.154048617114644,0,0,0,0,0.170453254832202,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0.42793898803392,0.318203247925937,0,0,0.274537029736055,0.117812402345686,0,0,0,0,0.243713489631284,0,0.272999822815972,0.565621727814851,0,0.551365343546124,0,0,0,0,0.202910376962704,0,0,0.430234056612155,0.0982490410131212,0,0,1.68886108238131,0.987884678879706,0,0,0.0962221127255121,0.670302275535787,0,0.470719003883896,0,0,0.443430153536676,0.229723400206959,0.507447609232169,3.0585488285695,3.41788312304498,0.238231775457789,0.411362273086194,1.94541993357815,1.62009431171434,0.79312517629427,0.106824071127473,0.962479855263359,0.245040215981032,0,0.144269212976445,0.142283686696828,0,0,0.191505370132367,0.635020748171649,0,0,0.684704037099577,0,0,0.6771671112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| |||
|short_description=p6@TDP2 | |||
}} |
Revision as of 19:40, 13 September 2013
Short description: | p6@TDP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_TDP2_5end |
Coexpression cluster: | NA |
Association with transcript: | -41bp_to_ENST00000480495_5end |
EntrezGene: | TDP2 |
HGNC: | 17768 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.41e-39 | 72 |
monopoietic cell | 1.46e-31 | 59 |
monocyte | 1.46e-31 | 59 |
monoblast | 1.46e-31 | 59 |
promonocyte | 1.46e-31 | 59 |
granulocyte monocyte progenitor cell | 1.92e-31 | 67 |
macrophage dendritic cell progenitor | 2.63e-30 | 61 |
myeloid lineage restricted progenitor cell | 1.10e-29 | 66 |
myeloid cell | 8.36e-29 | 108 |
common myeloid progenitor | 8.36e-29 | 108 |
defensive cell | 1.58e-23 | 48 |
phagocyte | 1.58e-23 | 48 |
leukocyte | 5.08e-17 | 136 |
hematopoietic oligopotent progenitor cell | 2.37e-16 | 161 |
hematopoietic multipotent progenitor cell | 2.37e-16 | 161 |
hematopoietic stem cell | 2.67e-15 | 168 |
classical monocyte | 8.19e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.19e-15 | 42 |
macrophage | 2.93e-14 | 6 |
hematopoietic cell | 4.49e-14 | 177 |
hematopoietic lineage restricted progenitor cell | 3.41e-13 | 120 |
nongranular leukocyte | 6.35e-13 | 115 |
neutrophil | 2.44e-11 | 3 |
granulocyte | 5.34e-11 | 8 |
adult endothelial progenitor cell | 7.28e-11 | 3 |
eosinophil | 3.06e-08 | 2 |
blood cell | 7.18e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.33e-27 | 76 |
hematopoietic system | 2.48e-26 | 98 |
blood island | 2.48e-26 | 98 |
bone element | 2.31e-24 | 82 |
hemolymphoid system | 4.01e-23 | 108 |
skeletal system | 7.97e-22 | 100 |
skeletal element | 1.50e-21 | 90 |
immune system | 1.28e-20 | 93 |
musculoskeletal system | 8.02e-13 | 167 |
lateral plate mesoderm | 4.30e-10 | 203 |
mesoderm | 2.32e-07 | 315 |
mesoderm-derived structure | 2.32e-07 | 315 |
presumptive mesoderm | 2.32e-07 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.