FFCP PHASE1:Hg19::chr7:55087162..55087197,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=|TSSclassifier=W|UniProt=|association_with_transcript=452bp_to_BC057802_5end|coexpression_cluster_id=C2899|description=CAGE_peak_1_at_BC057802_5end|id=chr7:55087162..55087197,+|ontology_enrichment_celltype=CL:0000066!1.26e-17!254;CL:0002076!9.55e-12!43;CL:0000223!1.55e-09!59|ontology_enrichment_celltype_v019=CL:0002577;1.95e-11;3!CL:0002076;2.09e-10;42!CL:0002368;9.07e-09;13!CL:0000349;2.52e-08;19!CL:0000244;5.08e-08;4!CL:0000731;5.08e-08;4!CL:0000575;1.38e-07;2!CL:0002537;3.03e-07;5|ontology_enrichment_celltype_v019_2=CL:0000066,4.97e-17,253;CL:0002076,5.62e-13,42;CL:0002577,1.91e-11,3;CL:0000223,2.48e-11,58;CL:0002368,7.63e-09,13;CL:0000244,1.59e-08,4;CL:0000731,1.59e-08,4;CL:0000349,2.13e-08,19;CL:0000076,1.14e-07,63;CL:0000575,2.45e-07,2;CL:0002537,2.78e-07,5|ontology_enrichment_development_v019=UBERON:0008947;7.05e-08;29|ontology_enrichment_disease=DOID:305!1.91e-09!106;DOID:1749!1.17e-08!14|ontology_enrichment_disease_v019=DOID:1749;5.22e-12;14|ontology_enrichment_disease_v019_2=DOID:1749,4.75e-12,14|ontology_enrichment_uberon=UBERON:0004119!2.78e-23!169;UBERON:0000925!2.78e-23!169;UBERON:0006595!2.78e-23!169;UBERON:0001007!1.35e-16!155;UBERON:0001555!1.35e-16!155;UBERON:0007026!1.35e-16!155;UBERON:0004921!9.77e-15!129;UBERON:0004185!9.77e-15!129;UBERON:0000077!6.34e-14!130;UBERON:0001004!6.51e-11!72;UBERON:0001041!8.20e-11!98;UBERON:0000065!5.65e-10!53;UBERON:0000481!9.00e-10!347;UBERON:0003104!3.78e-09!238;UBERON:0009142!3.78e-09!238;UBERON:0000468!1.14e-07!659;UBERON:0000922!2.16e-07!612;UBERON:0000467!2.36e-07!625;UBERON:0005631!2.88e-07!14;UBERON:0000158!2.88e-07!14;UBERON:0000480!3.12e-07!626;UBERON:0005911!6.20e-07!82;UBERON:0005156!6.55e-07!59;UBERON:0000990!6.55e-07!59;UBERON:0000923!7.56e-07!604;UBERON:0005291!7.56e-07!604;UBERON:0006598!7.56e-07!604;UBERON:0002532!7.56e-07!604;UBERON:0000072!9.02e-07!46;UBERON:0008947!9.21e-07!38;UBERON:0003258!9.21e-07!38;UBERON:0002050!9.86e-07!605;UBERON:0005423!9.86e-07!605|ontology_enrichment_uberon_v019=UBERON:0000065;7.59e-11;44!UBERON:0003343;6.70e-09;4!UBERON:0004785;6.70e-09;4!UBERON:0001987;1.13e-08;4!UBERON:0001004;3.43e-07;65!UBERON:0000072;6.72e-07;37|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.30e-19,160;UBERON:0000925,1.30e-19,160;UBERON:0006595,1.30e-19,160;UBERON:0000065,1.06e-13,54;UBERON:0001004,4.36e-13,74;UBERON:0005631,8.65e-12,14;UBERON:0000158,8.65e-12,14;UBERON:0001007,6.69e-10,145;UBERON:0001555,6.69e-10,145;UBERON:0007026,6.69e-10,145;UBERON:0001041,4.38e-09,87;UBERON:0004921,4.93e-09,118;UBERON:0003343,6.76e-09,4;UBERON:0004785,6.76e-09,4;UBERON:0001987,1.11e-08,4;UBERON:0004340,1.11e-08,4;UBERON:0003124,2.63e-08,7;UBERON:0008947,2.78e-08,38;UBERON:0003258,2.78e-08,38;UBERON:0000072,1.08e-07,47;UBERON:0004871,1.73e-07,8;UBERON:0000365,6.84e-07,5;UBERON:0005911,9.26e-07,82|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0.491467873003018,0,0.218441372130172,0.791300934685361,0.495065411840187,0.662794751455832,0,0,0,0.975865597581014,0,0.204000691244253,0.313454721478088,0.286235987131057,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0.30120591877825,1.10926203050036,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850813354476611,0.886917589850256,0.43917392846563,0.196468613246569,1.09288586487763,1.48313777113772,0,0,0,0,0,0,0,0,0,0.56530794192401,0,0,0.208994966536811,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0.12663051166458,0.529636723252875,0.286836620748814,0.709336764396714,0,0,0,0.311211035399766,0,0.326923806226917,0.302714855289863,0.576175924479999,0.937285727335186,0,0,0,0,0,0,0,0.122834317311768,0.103325781175765,0,0,0.910161361938026,0.718618141816238,0.168336113954066,0,0,0,0,0.300476117813194,0,0,0,0,0,0.103052529238439,0,0,0.337552664482532,0.0974370051611986,0,0.0920498986422993,0.161646056818812,0,0,0.508681776931463,0.386521706326594,0,0.573609190778008,0.365921118388786,0.132529768321485,0.232387885739037,0.10366105501537,0,0,0,0.643240938192885,0,0,0.721879481669586,0.946454400318751,0.337169380156203,0.241011029883482,1.10293972732394,0.435758888184812,0.71181185733329,1.48314438976181,1.37355025587742,1.15424147083917,0,1.40241773803446,0,0,0,0,1.18157981336281,0,0.860919069801795,0.171567810298526,0.109750285408626,1.1240175325762,0.804231779293047,1.574003567695,0,0,0,0.231860809950154,0.352226082707465,0,0,0,0,0,0,0,0.148631162288728,0.93733833986777,0.503946384596579,0.283550194484773,0.895585227028483,0.871901815541886,0.383382679165211,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0.336393253036082,0,0.1466765716419,0.258543431515556,0,0,0.26593811658487,0,0,0,0.266422179016099,0.14297799365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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=452bp_to_BC057802_5end | |||
|coexpression_cluster_id=C2899 | |||
|description=CAGE_peak_1_at_BC057802_5end | |||
|id=chr7:55087162..55087197,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.26e-17!254;CL:0002076!9.55e-12!43;CL:0000223!1.55e-09!59 | |||
|ontology_enrichment_celltype_v019=CL:0002577;1.95e-11;3!CL:0002076;2.09e-10;42!CL:0002368;9.07e-09;13!CL:0000349;2.52e-08;19!CL:0000244;5.08e-08;4!CL:0000731;5.08e-08;4!CL:0000575;1.38e-07;2!CL:0002537;3.03e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.97e-17,253;CL:0002076,5.62e-13,42;CL:0002577,1.91e-11,3;CL:0000223,2.48e-11,58;CL:0002368,7.63e-09,13;CL:0000244,1.59e-08,4;CL:0000731,1.59e-08,4;CL:0000349,2.13e-08,19;CL:0000076,1.14e-07,63;CL:0000575,2.45e-07,2;CL:0002537,2.78e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0008947;7.05e-08;29 | |||
|ontology_enrichment_disease=DOID:305!1.91e-09!106;DOID:1749!1.17e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;5.22e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,4.75e-12,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.78e-23!169;UBERON:0000925!2.78e-23!169;UBERON:0006595!2.78e-23!169;UBERON:0001007!1.35e-16!155;UBERON:0001555!1.35e-16!155;UBERON:0007026!1.35e-16!155;UBERON:0004921!9.77e-15!129;UBERON:0004185!9.77e-15!129;UBERON:0000077!6.34e-14!130;UBERON:0001004!6.51e-11!72;UBERON:0001041!8.20e-11!98;UBERON:0000065!5.65e-10!53;UBERON:0000481!9.00e-10!347;UBERON:0003104!3.78e-09!238;UBERON:0009142!3.78e-09!238;UBERON:0000468!1.14e-07!659;UBERON:0000922!2.16e-07!612;UBERON:0000467!2.36e-07!625;UBERON:0005631!2.88e-07!14;UBERON:0000158!2.88e-07!14;UBERON:0000480!3.12e-07!626;UBERON:0005911!6.20e-07!82;UBERON:0005156!6.55e-07!59;UBERON:0000990!6.55e-07!59;UBERON:0000923!7.56e-07!604;UBERON:0005291!7.56e-07!604;UBERON:0006598!7.56e-07!604;UBERON:0002532!7.56e-07!604;UBERON:0000072!9.02e-07!46;UBERON:0008947!9.21e-07!38;UBERON:0003258!9.21e-07!38;UBERON:0002050!9.86e-07!605;UBERON:0005423!9.86e-07!605 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;7.59e-11;44!UBERON:0003343;6.70e-09;4!UBERON:0004785;6.70e-09;4!UBERON:0001987;1.13e-08;4!UBERON:0001004;3.43e-07;65!UBERON:0000072;6.72e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.30e-19,160;UBERON:0000925,1.30e-19,160;UBERON:0006595,1.30e-19,160;UBERON:0000065,1.06e-13,54;UBERON:0001004,4.36e-13,74;UBERON:0005631,8.65e-12,14;UBERON:0000158,8.65e-12,14;UBERON:0001007,6.69e-10,145;UBERON:0001555,6.69e-10,145;UBERON:0007026,6.69e-10,145;UBERON:0001041,4.38e-09,87;UBERON:0004921,4.93e-09,118;UBERON:0003343,6.76e-09,4;UBERON:0004785,6.76e-09,4;UBERON:0001987,1.11e-08,4;UBERON:0004340,1.11e-08,4;UBERON:0003124,2.63e-08,7;UBERON:0008947,2.78e-08,38;UBERON:0003258,2.78e-08,38;UBERON:0000072,1.08e-07,47;UBERON:0004871,1.73e-07,8;UBERON:0000365,6.84e-07,5;UBERON:0005911,9.26e-07,82 | |||
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| |||
|short_description=p1@BC057802 | |||
}} |
Revision as of 01:36, 14 September 2013
Short description: | p1@BC057802 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_BC057802_5end |
Coexpression cluster: | C2899_epidermoid_oral_cervical_Small_large_placenta_mucinous |
Association with transcript: | 452bp_to_BC057802_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.97e-17 | 253 |
endo-epithelial cell | 5.62e-13 | 42 |
placental epithelial cell | 1.91e-11 | 3 |
endodermal cell | 2.48e-11 | 58 |
respiratory epithelial cell | 7.63e-09 | 13 |
transitional epithelial cell | 1.59e-08 | 4 |
urothelial cell | 1.59e-08 | 4 |
extraembryonic cell | 2.13e-08 | 19 |
squamous epithelial cell | 1.14e-07 | 63 |
corneal epithelial cell | 2.45e-07 | 2 |
amnion mesenchymal stem cell | 2.78e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.30e-19 | 160 |
endoderm | 1.30e-19 | 160 |
presumptive endoderm | 1.30e-19 | 160 |
respiratory tract | 1.06e-13 | 54 |
respiratory system | 4.36e-13 | 74 |
extraembryonic membrane | 8.65e-12 | 14 |
membranous layer | 8.65e-12 | 14 |
digestive system | 6.69e-10 | 145 |
digestive tract | 6.69e-10 | 145 |
primitive gut | 6.69e-10 | 145 |
foregut | 4.38e-09 | 87 |
subdivision of digestive tract | 4.93e-09 | 118 |
mucosa of oral region | 6.76e-09 | 4 |
respiratory system mucosa | 6.76e-09 | 4 |
placenta | 1.11e-08 | 4 |
allantois | 1.11e-08 | 4 |
chorion | 2.63e-08 | 7 |
respiratory primordium | 2.78e-08 | 38 |
endoderm of foregut | 2.78e-08 | 38 |
segment of respiratory tract | 1.08e-07 | 47 |
somatic layer of lateral plate mesoderm | 1.73e-07 | 8 |
urothelium | 6.84e-07 | 5 |
endo-epithelium | 9.26e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 4.75e-12 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.