FFCP PHASE1:Mm9::chr3:145554610..145554622,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:145554610..145554622,+|id=chr3:145554610..145554622,+|ontology_enrichment_celltype=CL:0000055!3.81e-14!50;CL:0000221!6.71e-12!44;CL:0000133!6.71e-12!44;CL:0002319!9.62e-12!43;CL:0000393!1.20e-11!39;CL:0000211!1.20e-11!39;CL:0000117!1.00e-09!23;CL:0000337!1.00e-09!23;CL:0002321!2.15e-09!70;CL:0000220!2.15e-09!70;CL:0000540!1.03e-08!33;CL:0000047!1.03e-08!33;CL:0000031!1.03e-08!33;CL:0000404!1.03e-08!33|ontology_enrichment_celltype_v019_2=CL:0002321,6.06e-14,70;CL:0002319,5.13e-11,43;CL:0000221,1.08e-10,44;CL:0000133,1.08e-10,44;CL:0000393,5.70e-10,39;CL:0000211,5.70e-10,39;CL:0002453,2.92e-09,8;CL:0000034,1.22e-07,97;CL:0000333,2.55e-07,10;CL:0000095,2.55e-07,10;CL:0000243,2.55e-07,10;CL:0000123,2.55e-07,10;CL:0000125,2.55e-07,10;CL:0000030,2.55e-07,10;CL:0000339,2.55e-07,10;CL:0000878,3.49e-07,2;CL:0000129,3.49e-07,2;CL:0000680,6.36e-07,6;CL:0000187,6.36e-07,6;CL:0000056,6.36e-07,6;CL:0002605,8.69e-07,2;CL:0002604,8.69e-07,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.41e-17!75;UBERON:0001016!3.41e-17!75;UBERON:0001017!1.32e-16!73;UBERON:0005743!1.32e-16!73;UBERON:0001049!8.98e-14!52;UBERON:0005068!8.98e-14!52;UBERON:0006241!8.98e-14!52;UBERON:0007135!8.98e-14!52;UBERON:0002020!2.60e-13!34;UBERON:0000025!1.42e-12!114;UBERON:0004121!5.70e-12!102;UBERON:0000924!5.70e-12!102;UBERON:0006601!5.70e-12!102;UBERON:0000955!2.15e-11!50;UBERON:0006238!2.15e-11!50;UBERON:0002616!3.53e-11!49;UBERON:0004111!1.01e-10!122;UBERON:0002791!1.50e-10!29;UBERON:0003528!1.50e-10!29;UBERON:0001893!1.50e-10!29;UBERON:0003080!3.00e-10!40;UBERON:0002346!3.51e-10!71;UBERON:0003075!3.51e-10!71;UBERON:0007284!3.51e-10!71;UBERON:0002780!8.73e-10!39;UBERON:0001890!8.73e-10!39;UBERON:0006240!8.73e-10!39;UBERON:0000033!2.30e-09!63;UBERON:0003056!7.60e-09!49;UBERON:0000956!8.04e-07!21;UBERON:0001869!8.04e-07!21;UBERON:0000203!8.04e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.92e-10,73;UBERON:0001016,4.77e-10,75;UBERON:0000025,1.58e-07,114;UBERON:0002020,2.48e-07,34;UBERON:0004121,5.08e-07,95;UBERON:0000924,5.08e-07,95;UBERON:0006601,5.08e-07,95|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,0,0,0,0,0,0.570070258369122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14024590558481,1.21652317463417,0.367093504323363,0,2.8343270329458,2.41654801007919,1.74986909166855,0.979904951377538,0,0,0,0,1.02903774414379,0.573066879877513,1.03134418455488,0.404632921719196,1.5869729378161,1.26766280701236,0.338844532069132,0,0.449949858640699,0,0,3.29560121570245,8.06858441175265,0.518448061542388,0.540023753326763,0.630974884054146,1.71390590642282,1.10434270475807,0.734944795289724,0.958454710182364,0,0,0.383062014255563,0.46081959976873,0.791317726381163,1.46380229763855,0.52091337055676,0.837548997004143,1.12552522006336,0.916789486660861,0.589257170947335,1.56608848879013,0.559198337475902,0.454357159999104,0.302286240427142,0.579728977403356,0,0,2.69851595818909,1.94932925234301,1.34408066129201,0.140444420131752,0.170430322578058,0,0,0.281686839553361,0,0,0,0.216491041011214,0,0,0.34255163915718,0,0,0,0.304465478312141,0,0,0.117588707135705,0,0.741584903203122,0.144599356919912,0,0.161766849947409,0.220841518460394,0,0,0.292780797011547,1.8850203613211,0,0,0,0,0.748953197024114,0.457500602818626,0.502617408451458,0.173824320192276,0.511430914660661,0.41557608911912,0.324482526135515,0.203678727700633,0,0,0,0,0,0.360124259610698,0.30140963567143,0.204109497453984,0.2562274405697,0.281105173679186,0,0.215567992932842,0,0.175951124163949,0.657587197282725,0.278047249225598,0,0.205782136407943,0.199034266818493,0,0,0,0.207125772535502,0.469052119962192,0.180062061461015,0,0,0,0,0.268273401399619,0.116765342367169,0,0,0,0,0,0.134206418760372,0,0.205809224758569,0,0,0.213288250535234,0.232236671860439,0.128867461322093,0.201683524623343,0,0,0.474529061544512,0,0.251335208800269,0.198956472041151,0.19496408711912,0,0.432276099749388,0,0.569003702859245,0.228497025219458,1.1270773567308,0.203651327845314,0.387904974335251,0.420814919341911,0.379419222745544,0.590440591918409,0.470996183524124,1.35736880313981,0.889357881261447,0.333690211432188,0,0,0.405720242777006,0.241177159752417,0.25462585178142,0.287696137450811,0.810676133875177,0.274561413188081,5.75072826109418,0.744281895337007,0,0.252578877947112,1.07638448113147,1.4473305640901,0,0.189491411770485,0.162964976442026,0,0,0,0,0.390267295715598,0,0.221464689648775,0,0.163863314715738,0,0.144649058581512,0,0,0,0,0.321101179975584,0.117211686592203,0.163934945376675,0,0,1.17131623288992,0.215423397732799,0,0,0,1.21443210502468,1.16902343164525,0.395287777946524,0.321321316421807,0,0,0,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0.18006109403131,0.258717367565509,0.214337035031592,0,0.178368817602071,0.164549020602121,0,0,0,0,0,0,0.0603129249281559,0.238744688006273,0.1641408997450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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:145554610..145554622,+ | |||
|id=chr3:145554610..145554622,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.81e-14!50;CL:0000221!6.71e-12!44;CL:0000133!6.71e-12!44;CL:0002319!9.62e-12!43;CL:0000393!1.20e-11!39;CL:0000211!1.20e-11!39;CL:0000117!1.00e-09!23;CL:0000337!1.00e-09!23;CL:0002321!2.15e-09!70;CL:0000220!2.15e-09!70;CL:0000540!1.03e-08!33;CL:0000047!1.03e-08!33;CL:0000031!1.03e-08!33;CL:0000404!1.03e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,6.06e-14,70;CL:0002319,5.13e-11,43;CL:0000221,1.08e-10,44;CL:0000133,1.08e-10,44;CL:0000393,5.70e-10,39;CL:0000211,5.70e-10,39;CL:0002453,2.92e-09,8;CL:0000034,1.22e-07,97;CL:0000333,2.55e-07,10;CL:0000095,2.55e-07,10;CL:0000243,2.55e-07,10;CL:0000123,2.55e-07,10;CL:0000125,2.55e-07,10;CL:0000030,2.55e-07,10;CL:0000339,2.55e-07,10;CL:0000878,3.49e-07,2;CL:0000129,3.49e-07,2;CL:0000680,6.36e-07,6;CL:0000187,6.36e-07,6;CL:0000056,6.36e-07,6;CL:0002605,8.69e-07,2;CL:0002604,8.69e-07,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.41e-17!75;UBERON:0001016!3.41e-17!75;UBERON:0001017!1.32e-16!73;UBERON:0005743!1.32e-16!73;UBERON:0001049!8.98e-14!52;UBERON:0005068!8.98e-14!52;UBERON:0006241!8.98e-14!52;UBERON:0007135!8.98e-14!52;UBERON:0002020!2.60e-13!34;UBERON:0000025!1.42e-12!114;UBERON:0004121!5.70e-12!102;UBERON:0000924!5.70e-12!102;UBERON:0006601!5.70e-12!102;UBERON:0000955!2.15e-11!50;UBERON:0006238!2.15e-11!50;UBERON:0002616!3.53e-11!49;UBERON:0004111!1.01e-10!122;UBERON:0002791!1.50e-10!29;UBERON:0003528!1.50e-10!29;UBERON:0001893!1.50e-10!29;UBERON:0003080!3.00e-10!40;UBERON:0002346!3.51e-10!71;UBERON:0003075!3.51e-10!71;UBERON:0007284!3.51e-10!71;UBERON:0002780!8.73e-10!39;UBERON:0001890!8.73e-10!39;UBERON:0006240!8.73e-10!39;UBERON:0000033!2.30e-09!63;UBERON:0003056!7.60e-09!49;UBERON:0000956!8.04e-07!21;UBERON:0001869!8.04e-07!21;UBERON:0000203!8.04e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.92e-10,73;UBERON:0001016,4.77e-10,75;UBERON:0000025,1.58e-07,114;UBERON:0002020,2.48e-07,34;UBERON:0004121,5.08e-07,95;UBERON:0000924,5.08e-07,95;UBERON:0006601,5.08e-07,95 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,0,0,0,0,0,0.570070258369122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14024590558481,1.21652317463417,0.367093504323363,0,2.8343270329458,2.41654801007919,1.74986909166855,0.979904951377538,0,0,0,0,1.02903774414379,0.573066879877513,1.03134418455488,0.404632921719196,1.5869729378161,1.26766280701236,0.338844532069132,0,0.449949858640699,0,0,3.29560121570245,8.06858441175265,0.518448061542388,0.540023753326763,0.630974884054146,1.71390590642282,1.10434270475807,0.734944795289724,0.958454710182364,0,0,0.383062014255563,0.46081959976873,0.791317726381163,1.46380229763855,0.52091337055676,0.837548997004143,1.12552522006336,0.916789486660861,0.589257170947335,1.56608848879013,0.559198337475902,0.454357159999104,0.302286240427142,0.579728977403356,0,0,2.69851595818909,1.94932925234301,1.34408066129201,0.140444420131752,0.170430322578058,0,0,0.281686839553361,0,0,0,0.216491041011214,0,0,0.34255163915718,0,0,0,0.304465478312141,0,0,0.117588707135705,0,0.741584903203122,0.144599356919912,0,0.161766849947409,0.220841518460394,0,0,0.292780797011547,1.8850203613211,0,0,0,0,0.748953197024114,0.457500602818626,0.502617408451458,0.173824320192276,0.511430914660661,0.41557608911912,0.324482526135515,0.203678727700633,0,0,0,0,0,0.360124259610698,0.30140963567143,0.204109497453984,0.2562274405697,0.281105173679186,0,0.215567992932842,0,0.175951124163949,0.657587197282725,0.278047249225598,0,0.205782136407943,0.199034266818493,0,0,0,0.207125772535502,0.469052119962192,0.180062061461015,0,0,0,0,0.268273401399619,0.116765342367169,0,0,0,0,0,0.134206418760372,0,0.205809224758569,0,0,0.213288250535234,0.232236671860439,0.128867461322093,0.201683524623343,0,0,0.474529061544512,0,0.251335208800269,0.198956472041151,0.19496408711912,0,0.432276099749388,0,0.569003702859245,0.228497025219458,1.1270773567308,0.203651327845314,0.387904974335251,0.420814919341911,0.379419222745544,0.590440591918409,0.470996183524124,1.35736880313981,0.889357881261447,0.333690211432188,0,0,0.405720242777006,0.241177159752417,0.25462585178142,0.287696137450811,0.810676133875177,0.274561413188081,5.75072826109418,0.744281895337007,0,0.252578877947112,1.07638448113147,1.4473305640901,0,0.189491411770485,0.162964976442026,0,0,0,0,0.390267295715598,0,0.221464689648775,0,0.163863314715738,0,0.144649058581512,0,0,0,0,0.321101179975584,0.117211686592203,0.163934945376675,0,0,1.17131623288992,0.215423397732799,0,0,0,1.21443210502468,1.16902343164525,0.395287777946524,0.321321316421807,0,0,0,0,0,0.242780636154981,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0.18006109403131,0.258717367565509,0.214337035031592,0,0.178368817602071,0.164549020602121,0,0,0,0,0,0,0.0603129249281559,0.238744688006273,0.164140899745061,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.259229946583586,0,0.56369293868419,0.149516546043979,0,0,0,0.168956125490778,0,0.13020438484395,0.419437377702843,0.241584120826006,0.288030006257865,0,0,0,0,0.179026695667481,0,0,0,0,0,0,0,0,0,0,1.99787358036658,1.79427713218951,0.671538465456314,0,0,0,0,0,1.6942555278512,1.38097570952153,1.14579102687879,1.20297227640581,0.685082519770642,0.755393897389701,0.675022500231806,0,0.453142408984205,0.51776031175182,0.31136204275253,0,0,0.486213434136588,0.209613162627982,0.183843508450014,0,0,0.320919209591815,0.758091635291392,0,0.188626341386076,0.37456602987953,0.0640251524048693,0.114870937911227,0,0.231768651889711,0,0,0.147198920134397,0.685738504770831,0.177475806159338,0.476872379894642,0.290692833264657,0.188218760830661,0.25384382367503,0,0.526139422875686,0.814824683075171,0.561142271657738,0.237270036248348,0.29551344712669,0.409231043169689,0,0.192906610981141,0.749431733813838,0,0.429742108096597,0.382576664137687,0,0 | |||
|short_description=p@chr3:145554610..145554622,+ | |||
}} |
Revision as of 01:45, 14 September 2013
Short description: | p@chr3:145554610..145554622, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:145554610..145554622, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 6.06e-14 | 70 |
neural cell | 5.13e-11 | 43 |
ectodermal cell | 1.08e-10 | 44 |
neurectodermal cell | 1.08e-10 | 44 |
electrically responsive cell | 5.70e-10 | 39 |
electrically active cell | 5.70e-10 | 39 |
oligodendrocyte precursor cell | 2.92e-09 | 8 |
stem cell | 1.22e-07 | 97 |
migratory neural crest cell | 2.55e-07 | 10 |
neuron associated cell | 2.55e-07 | 10 |
glial cell (sensu Vertebrata) | 2.55e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 2.55e-07 | 10 |
glial cell | 2.55e-07 | 10 |
glioblast | 2.55e-07 | 10 |
glioblast (sensu Vertebrata) | 2.55e-07 | 10 |
central nervous system macrophage | 3.49e-07 | 2 |
microglial cell | 3.49e-07 | 2 |
muscle precursor cell | 6.36e-07 | 6 |
muscle cell | 6.36e-07 | 6 |
myoblast | 6.36e-07 | 6 |
astrocyte of the cerebral cortex | 8.69e-07 | 2 |
astrocyte of the hippocampus | 8.69e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.92e-10 | 73 |
nervous system | 4.77e-10 | 75 |
tube | 1.58e-07 | 114 |
gray matter | 2.48e-07 | 34 |
ectoderm-derived structure | 5.08e-07 | 95 |
ectoderm | 5.08e-07 | 95 |
presumptive ectoderm | 5.08e-07 | 95 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.