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MCL coexpression mm9:3560: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0.34343271907826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.816296156159051,0,0,0,0.0546670935592277,0,0,0,0,0,0.0289918065944652,0,0,0,0.0903469195484817,0.210079290551775,0.161038486214538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0205844358967264,0,0,0,0,0,0.0368480287818087,0,0,0,0,0,0.637648503682455,0,0,0,0.128195477214285,0,0,0,0,0,0,0.548005679000207,0,0,0.0231592211867425,0,0.05490629185311,0,0,0,0.216108139306657,0,0,0.0572714472741017,0.0916449143191237,0.0981370735916123,0,0,0,0.0329339538696473,0,0,0,0.0202062562254905,0,0,0,0,0,0,0.113106331030559,0.0628879792226909,0.292350461660722,0.0276479775833212,0,0,0,0,0,0,0,0,0.0282597520565416,0.0250735332543124,0.0848236495926866,0.135820096960085,0.108244258635657,0.04325704227788,0.0696010162215227,0.126328742971524,0,0,0,0,0,0,0.0307600234638862,0,0.020768774005579,0.0766119452702577,0.201042153923628,0.0159873092058965,0,0,0,0,0,0,0,0,0,0.033967285130882,0,0,0.033196373278218,0,0,0,0.128152882460717,0,0.0324578881582755,0.0262678054601152,0.0257849511336695,0.0928278873935657,0,0.0485316455941463,0.423040359481732,0.565326335086851,0.769451464938053,0.985140995530254,1.09348246015277,1.12933661674231,1.36860126715084,1.54155119212701,1.55638284925614,1.50257600414176,0,0,0,0,0,0,0.386118637983595,0.535191511502759,0,0,0,0.045799574939574,0,0,0,0,0.201778524961654,0.0465196188950117,0.172024562801665,0.40000956441671,1.03163941436674,1.44805587312185,1.53311804636741,1.27841106837012,0.366781937448875,0.422754935403674,0.315891182466875,0.303854455952325,0.422142284414146,0.470105869005688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472687540954062,0.18106281544866,0.081646314070382,0.557908374326079,0,0.17833876014579,0.0934480045572447,0.096159492544701,0.175550444299962,0.116084780042432,0.102763233876781,0.10675706431363,0.0441396529218,0,0,0,0,0,0.0333094081862488,0.117744185213803,0.0236339951876586,0.0237604138459295,0,0,0.418265734588334,0.051135848821674,0.0288492962026158,0,0,0,0.0163248575732391,0.0220018491878135,0.0740586442457873,0,0,0.0271622003567789,0,0,0,0,0,0,0,0.341038949067863,0.0212571866904302,0.128333377255506,0.155294798671798,0.169803088547049,0.177244267685642,0.105945561666045,0.0997515899424057,0.150712654462772,0,0,0,0,0,0,0.0508487982458491,0,0.0160640156187697,0.0177189959645354,0,0,0.0366419935235673,0,0.0267221387019274,0.0270463608635351,0,0.0238412128518329,0.0484363831203557,0.0164312680455674,0.0374656234811923,0,0,0,0,0,0.0160017698361234,0,0,0,0,0.0255698190552108,1.51109271587379,1.48813670426471,0.620729189647695,0,0,0,0,0,0,0,0,0,0,0,0.0273046679227243,0,0,0.156354576449272,0.070626096455427,0.27533987396126,0.608401057600211,0.539206169289448,0.647230015569984,0.528784302472632,0.595657570290093,0.513767889258646,0.594562978391027,0.52879205751165,0.505839260005857,0.455623205257921,0.537819367343246,0.442031283733783,0.508643059330237,0.529832042535855,0.562564785618774,0.576468679594039,0.521516176124942,0.545311770838262,0.570995188489546,0.556864164109243,0.461789111435477,0.447663209518083,0.528961758595934,0.531693372518855,0.491776368207116,0.467944694375386,0.599434339092729,0.529482496239502,0.543553658123824,0.257759314626399,0.602873809401581,0.380441068350725,0.0253389627196635,0.0577135416649349,0.0853422575166858|coexpression_dpi_cluster_scores_median=0.441166642719321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.506657285314008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0667859388724756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381014703081243,0,0,0,0.153061513253607,0,0,0,0,0,0,0.226626523502606,0,0,0,0,0,0,0,0,0.174463933976285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0805105854221362,0.0509235292940968,0.245060439302742,0,0,0,0,0,0,0,0,0,0,0,0.0703892716151147,0.0860734338295156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.186545793286102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195623968526031,0.255209669792245,0.327783284444535,0.607966215805611,0.721559584554013,0.744983259285823,1.00185588674424,1.14120144508614,1.19314914335156,1.23464452818034,0,0,0,0,0,0,0.098514232005992,0.197388711530769,0,0,0,0,0,0,0,0,0.0736278867910527,0,0,0.178756942224084,0.677154537461907,1.22390040701616,1.23519925776102,1.1661148724829,0.212331610807172,0.159245076116426,0.325553299342784,0.297362109540806,0.308801213670539,0.53895483034423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232920019915626,0,0.122469471105573,0.497567011948905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0843392403965415,0,0,0,0,0.0915514965999916,0,0,0,0,0,0,0,0.111087966368681,0,0,0,0,0,0,0,0,0,0,0,0,0.0803809427109337,0.0849373898696927,0.0824580172145032,0,0,0,0,0,0,0,0,0,0,0.0527554171614426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04668451424532,1.09185683480178,0.398040519458382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324536297029726,0.209006745960922,0.511406640584547,0.17765030293269,0.245620709720879,0.244154700692047,0.307508142830053,0.370055460896091,0.26987051421268,0.169172763866184,0.356929394292355,0.0766073954291401,0.349521849431601,0.393046569245674,0.375018918708493,0.275859125630462,0.340876399369206,0.389779719344973,0.414949873228664,0.371775781228211,0.189990830607665,0.252661106676919,0.225056016595504,0.193442483447008,0.28982969741047,0.318803782272219,0.259704250749409,0.209447282040344,0.24837215409455,0.0968441960560167,0.458101692104149,0.26939249630118,0,0.0865703124974023,0.0905641158318875|gostat_on_MCL_coexpression=GO:0016471;vacuolar proton-transporting V-type ATPase complex;0.00679340382402893;140494!GO:0033176;proton-transporting V-type ATPase complex;0.00679340382402893;140494!GO:0015991;ATP hydrolysis coupled proton transport;0.00679340382402893;140494!GO:0015988;energy coupled proton transport, against electrochemical gradient;0.00679340382402893;140494!GO:0005774;vacuolar membrane;0.0101901057360434;140494!GO:0044437;vacuolar part;0.0101901057360434;140494!GO:0005903;brush border;0.0101901057360434;140494!GO:0008553;hydrogen-exporting ATPase activity, phosphorylative mechanism;0.0101901057360434;140494!GO:0016469;proton-transporting two-sector ATPase complex;0.013964218971615;140494!GO:0015992;proton transport;0.0169835095600723;140494!GO:0006818;hydrogen transport;0.0169835095600723;140494!GO:0015662;ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;0.0169835095600723;140494!GO:0045177;apical part of cell;0.0196523467766551;140494!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0196523467766551;140494!GO:0015078;hydrogen ion transmembrane transporter activity;0.0202258159306316;140494!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.0202258159306316;140494!GO:0043492;ATPase activity, coupled to movement of substances;0.0202258159306316;140494!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0202258159306316;140494!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0202258159306316;140494!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0202258159306316;140494!GO:0015399;primary active transmembrane transporter activity;0.0202258159306316;140494!GO:0022890;inorganic cation transmembrane transporter activity;0.0202258159306316;140494!GO:0005773;vacuole;0.0282073941389027;140494!GO:0042623;ATPase activity, coupled;0.0318440804251356;140494!GO:0016887;ATPase activity;0.035461567961431;140494!GO:0015672;monovalent inorganic cation transport;0.0373637210321591;140494!GO:0022804;active transmembrane transporter activity;0.0396281889735021;140494!GO:0042995;cell projection;0.044157124856188;140494!GO:0017111;nucleoside-triphosphatase activity;0.0472541177759659;140494!GO:0008324;cation transmembrane transporter activity;0.0472541177759659;140494!GO:0006812;cation transport;0.0472541177759659;140494!GO:0016462;pyrophosphatase activity;0.0472541177759659;140494!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;0.0472541177759659;140494!GO:0016817;hydrolase activity, acting on acid anhydrides;0.0472541177759659;140494!|ontology_enrichment_celltype=|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0002113!8.20e-13!14;UBERON:0003918!8.20e-13!14;UBERON:0011143!8.20e-13!14;UBERON:0005095!8.20e-13!14;UBERON:0007687!8.20e-13!14;UBERON:0001008!1.98e-11!19;UBERON:0006554!1.94e-10!18;UBERON:0002048!1.95e-10!14;UBERON:0000117!1.95e-10!14;UBERON:0000171!1.95e-10!14;UBERON:0000170!1.95e-10!14;UBERON:0005597!1.95e-10!14;UBERON:0000118!1.95e-10!14;UBERON:0005153!5.31e-08!17;UBERON:0005178!5.31e-08!17;UBERON:0005181!5.31e-08!17;UBERON:0002224!5.31e-08!17;UBERON:0000915!5.31e-08!17;UBERON:0008947!5.31e-08!17;UBERON:0003258!5.31e-08!17;UBERON:0000489!2.78e-07!21|tfbs_overrepresentation_for_novel_motifs=0.752782,1.68931,0.722405,0.801166,0.587814,0.81763,0.919454,0.467321,0.479531,0.235304,0.870507,0.906098,0.467629,0.933025,0.608226,0,1.14208,0.578045,0.448066,0.876292,0.679146,0.275782,0.932027,0.585919,0.731217,0.963352,3.95396,0.841386,0.64294,0.380786,0.825437,1.24901,0.575271,0.411696,0.608816,0.872889,0.563758,0.902078,0.536514,0.50014,0.582863,0.831295,0.724277,0.610669,0.156582,0.788421,1.05665,0.859154,0.663409,0.646474,1.12346,0.99279,0.371606,1.3966,1.41464,0.940919,2.67145,0.891887,1.08907,0.938668,1.22795,1.00308,0.494668,1.11142,0.953187,1.15459,1.55483,1.90983,1.22303,1.7608,0.700291,0.474956,0.284975,1.44925,0.416814,0.402065,0.411601,1.04436,1.20986,1.63704,0.476502,1.16055,1.00151,0.459035,1.32978,0.535545,0.568545,0.380977,1.06194,2.07346,1.62608,1.33496,1.26245,1.4508,0.531443,0.509215,2.04165,1.26539,1.05692,0.352122,2.37055,1.24872,1.37854,1.12409,1.12297,0.830796,1.18646,0.854628,0.689894,0.681267,0.744607,1.38039,0.685481,0.876299,1.63327,0.580657,0.212464,0.805461,1.14346,0.559153,1.45481,1.08896,0.965352,1.04338,1.68841,1.21376,0.928483,1.25534,1.55328,0.598722,1.36093,0.792832,1.52297,0.955954,1.65529,0.273451,0.762499,0.832891,1.60513,2.44352,2.04137,1.55966,0.978551,1.26,1.11604,0.831808,1.06002,2.40374,0.765221,0.589976,0.38417,0.260379,1.39822,0.516739,0.954936,1.48249,0.993889,1.50904,0.749933,0.762177,1.61484,1.32889,1.21423,0.741984,1.11251,0.94678,1.38188,0.904334,0.135528|tfbs_overrepresentation_jaspar=MA0003.1;0.526413,MA0004.1;0.801718,MA0006.1;0.60285,MA0007.1;0.784593,MA0009.1;1.27673,MA0014.1;0.133574,MA0017.1;1.5346,MA0019.1;2.45612,MA0024.1;1.23079,MA0025.1;1.51835,MA0027.1;2.9431,MA0028.1;0.61552,MA0029.1;1.20789,MA0030.1;1.21482,MA0031.1;1.17722,MA0038.1;0.963265,MA0040.1;1.28983,MA0041.1;0.714279,MA0042.1;0.69885,MA0043.1;1.3775,MA0046.1;1.31428,MA0048.1;0.353763,MA0050.1;0.845669,MA0051.1;0.973068,MA0052.1;1.29825,MA0055.1;0.557057,MA0056.1;0,MA0057.1;0.896032,MA0058.1;0.690848,MA0059.1;0.705317,MA0060.1;0.502699,MA0061.1;1.33581,MA0063.1;0,MA0066.1;0.951196,MA0067.1;1.63197,MA0068.1;0.343188,MA0069.1;1.29861,MA0070.1;1.28847,MA0071.1;0.844726,MA0072.1;1.2796,MA0073.1;0.439282,MA0074.1;0.911576,MA0076.1;0.657929,MA0077.1;1.2569,MA0078.1;1.0091,MA0081.1;0.732313,MA0083.1;1.37668,MA0084.1;1.96428,MA0087.1;1.33189,MA0088.1;0.27999,MA0089.1;0,MA0090.1;0.762482,MA0091.1;0.816659,MA0092.1;0.762845,MA0093.1;0.62555,MA0095.1;0,MA0098.1;0,MA0100.1;0.89873,MA0101.1;0.71579,MA0103.1;1.56167,MA0105.1;1.04599,MA0106.1;1.01755,MA0107.1;0.640607,MA0108.2;1.10817,MA0109.1;0,MA0111.1;0.778753,MA0113.1;0.986839,MA0114.1;1.3296,MA0115.1;1.38041,MA0116.1;0.602598,MA0117.1;1.34691,MA0119.1;0.716476,MA0122.1;1.36752,MA0124.1;1.57762,MA0125.1;1.5017,MA0130.1;0,MA0131.1;1.07881,MA0132.1;0,MA0133.1;0,MA0135.1;1.4152,MA0136.1;0.933582,MA0139.1;0.462282,MA0140.1;0.898603,MA0141.1;0.671467,MA0142.1;1.16183,MA0143.1;1.00467,MA0144.1;0.541532,MA0145.1;0.794492,MA0146.1;0.151124,MA0147.1;0.556853,MA0148.1;0.820161,MA0149.1;0.722227,MA0062.2;0.412742,MA0035.2;0.903829,MA0039.2;0.40695,MA0138.2;1.07027,MA0002.2;0.466067,MA0137.2;0.668025,MA0104.2;0.48458,MA0047.2;0.962424,MA0112.2;0.29236,MA0065.2;3.07166,MA0150.1;0.784464,MA0151.1;0,MA0152.1;0.962542,MA0153.1;1.43238,MA0154.1;0.925147,MA0155.1;2.3138,MA0156.1;0.656895,MA0157.1;1.12772,MA0158.1;0,MA0159.1;1.39671,MA0160.1;0.823568,MA0161.1;0,MA0162.1;0.166722,MA0163.1;0.927936,MA0164.1;0.933981,MA0080.2;0.64167,MA0018.2;0.944669,MA0099.2;1.06348,MA0079.2;0.651053,MA0102.2;2.01714,MA0258.1;0.520639,MA0259.1;0.543506,MA0442.1;0}}
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|gostat_on_MCL_coexpression=GO:0016471;vacuolar proton-transporting V-type ATPase complex;0.00679340382402893;140494!GO:0033176;proton-transporting V-type ATPase complex;0.00679340382402893;140494!GO:0015991;ATP hydrolysis coupled proton transport;0.00679340382402893;140494!GO:0015988;energy coupled proton transport, against electrochemical gradient;0.00679340382402893;140494!GO:0005774;vacuolar membrane;0.0101901057360434;140494!GO:0044437;vacuolar part;0.0101901057360434;140494!GO:0005903;brush border;0.0101901057360434;140494!GO:0008553;hydrogen-exporting ATPase activity, phosphorylative mechanism;0.0101901057360434;140494!GO:0016469;proton-transporting two-sector ATPase complex;0.013964218971615;140494!GO:0015992;proton transport;0.0169835095600723;140494!GO:0006818;hydrogen transport;0.0169835095600723;140494!GO:0015662;ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;0.0169835095600723;140494!GO:0045177;apical part of cell;0.0196523467766551;140494!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0196523467766551;140494!GO:0015078;hydrogen ion transmembrane transporter activity;0.0202258159306316;140494!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.0202258159306316;140494!GO:0043492;ATPase activity, coupled to movement of substances;0.0202258159306316;140494!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0202258159306316;140494!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0202258159306316;140494!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0202258159306316;140494!GO:0015399;primary active transmembrane transporter activity;0.0202258159306316;140494!GO:0022890;inorganic cation transmembrane transporter activity;0.0202258159306316;140494!GO:0005773;vacuole;0.0282073941389027;140494!GO:0042623;ATPase activity, coupled;0.0318440804251356;140494!GO:0016887;ATPase activity;0.035461567961431;140494!GO:0015672;monovalent inorganic cation transport;0.0373637210321591;140494!GO:0022804;active transmembrane transporter activity;0.0396281889735021;140494!GO:0042995;cell projection;0.044157124856188;140494!GO:0017111;nucleoside-triphosphatase activity;0.0472541177759659;140494!GO:0008324;cation transmembrane transporter activity;0.0472541177759659;140494!GO:0006812;cation transport;0.0472541177759659;140494!GO:0016462;pyrophosphatase activity;0.0472541177759659;140494!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;0.0472541177759659;140494!GO:0016817;hydrolase activity, acting on acid anhydrides;0.0472541177759659;140494!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002113!8.20e-13!14;UBERON:0003918!8.20e-13!14;UBERON:0011143!8.20e-13!14;UBERON:0005095!8.20e-13!14;UBERON:0007687!8.20e-13!14;UBERON:0001008!1.98e-11!19;UBERON:0006554!1.94e-10!18;UBERON:0002048!1.95e-10!14;UBERON:0000117!1.95e-10!14;UBERON:0000171!1.95e-10!14;UBERON:0000170!1.95e-10!14;UBERON:0005597!1.95e-10!14;UBERON:0000118!1.95e-10!14;UBERON:0005153!5.31e-08!17;UBERON:0005178!5.31e-08!17;UBERON:0005181!5.31e-08!17;UBERON:0002224!5.31e-08!17;UBERON:0000915!5.31e-08!17;UBERON:0008947!5.31e-08!17;UBERON:0003258!5.31e-08!17;UBERON:0000489!2.78e-07!21
|tfbs_overrepresentation_for_novel_motifs=0.752782,1.68931,0.722405,0.801166,0.587814,0.81763,0.919454,0.467321,0.479531,0.235304,0.870507,0.906098,0.467629,0.933025,0.608226,0,1.14208,0.578045,0.448066,0.876292,0.679146,0.275782,0.932027,0.585919,0.731217,0.963352,3.95396,0.841386,0.64294,0.380786,0.825437,1.24901,0.575271,0.411696,0.608816,0.872889,0.563758,0.902078,0.536514,0.50014,0.582863,0.831295,0.724277,0.610669,0.156582,0.788421,1.05665,0.859154,0.663409,0.646474,1.12346,0.99279,0.371606,1.3966,1.41464,0.940919,2.67145,0.891887,1.08907,0.938668,1.22795,1.00308,0.494668,1.11142,0.953187,1.15459,1.55483,1.90983,1.22303,1.7608,0.700291,0.474956,0.284975,1.44925,0.416814,0.402065,0.411601,1.04436,1.20986,1.63704,0.476502,1.16055,1.00151,0.459035,1.32978,0.535545,0.568545,0.380977,1.06194,2.07346,1.62608,1.33496,1.26245,1.4508,0.531443,0.509215,2.04165,1.26539,1.05692,0.352122,2.37055,1.24872,1.37854,1.12409,1.12297,0.830796,1.18646,0.854628,0.689894,0.681267,0.744607,1.38039,0.685481,0.876299,1.63327,0.580657,0.212464,0.805461,1.14346,0.559153,1.45481,1.08896,0.965352,1.04338,1.68841,1.21376,0.928483,1.25534,1.55328,0.598722,1.36093,0.792832,1.52297,0.955954,1.65529,0.273451,0.762499,0.832891,1.60513,2.44352,2.04137,1.55966,0.978551,1.26,1.11604,0.831808,1.06002,2.40374,0.765221,0.589976,0.38417,0.260379,1.39822,0.516739,0.954936,1.48249,0.993889,1.50904,0.749933,0.762177,1.61484,1.32889,1.21423,0.741984,1.11251,0.94678,1.38188,0.904334,0.135528
|tfbs_overrepresentation_jaspar=MA0003.1;0.526413,MA0004.1;0.801718,MA0006.1;0.60285,MA0007.1;0.784593,MA0009.1;1.27673,MA0014.1;0.133574,MA0017.1;1.5346,MA0019.1;2.45612,MA0024.1;1.23079,MA0025.1;1.51835,MA0027.1;2.9431,MA0028.1;0.61552,MA0029.1;1.20789,MA0030.1;1.21482,MA0031.1;1.17722,MA0038.1;0.963265,MA0040.1;1.28983,MA0041.1;0.714279,MA0042.1;0.69885,MA0043.1;1.3775,MA0046.1;1.31428,MA0048.1;0.353763,MA0050.1;0.845669,MA0051.1;0.973068,MA0052.1;1.29825,MA0055.1;0.557057,MA0056.1;0,MA0057.1;0.896032,MA0058.1;0.690848,MA0059.1;0.705317,MA0060.1;0.502699,MA0061.1;1.33581,MA0063.1;0,MA0066.1;0.951196,MA0067.1;1.63197,MA0068.1;0.343188,MA0069.1;1.29861,MA0070.1;1.28847,MA0071.1;0.844726,MA0072.1;1.2796,MA0073.1;0.439282,MA0074.1;0.911576,MA0076.1;0.657929,MA0077.1;1.2569,MA0078.1;1.0091,MA0081.1;0.732313,MA0083.1;1.37668,MA0084.1;1.96428,MA0087.1;1.33189,MA0088.1;0.27999,MA0089.1;0,MA0090.1;0.762482,MA0091.1;0.816659,MA0092.1;0.762845,MA0093.1;0.62555,MA0095.1;0,MA0098.1;0,MA0100.1;0.89873,MA0101.1;0.71579,MA0103.1;1.56167,MA0105.1;1.04599,MA0106.1;1.01755,MA0107.1;0.640607,MA0108.2;1.10817,MA0109.1;0,MA0111.1;0.778753,MA0113.1;0.986839,MA0114.1;1.3296,MA0115.1;1.38041,MA0116.1;0.602598,MA0117.1;1.34691,MA0119.1;0.716476,MA0122.1;1.36752,MA0124.1;1.57762,MA0125.1;1.5017,MA0130.1;0,MA0131.1;1.07881,MA0132.1;0,MA0133.1;0,MA0135.1;1.4152,MA0136.1;0.933582,MA0139.1;0.462282,MA0140.1;0.898603,MA0141.1;0.671467,MA0142.1;1.16183,MA0143.1;1.00467,MA0144.1;0.541532,MA0145.1;0.794492,MA0146.1;0.151124,MA0147.1;0.556853,MA0148.1;0.820161,MA0149.1;0.722227,MA0062.2;0.412742,MA0035.2;0.903829,MA0039.2;0.40695,MA0138.2;1.07027,MA0002.2;0.466067,MA0137.2;0.668025,MA0104.2;0.48458,MA0047.2;0.962424,MA0112.2;0.29236,MA0065.2;3.07166,MA0150.1;0.784464,MA0151.1;0,MA0152.1;0.962542,MA0153.1;1.43238,MA0154.1;0.925147,MA0155.1;2.3138,MA0156.1;0.656895,MA0157.1;1.12772,MA0158.1;0,MA0159.1;1.39671,MA0160.1;0.823568,MA0161.1;0,MA0162.1;0.166722,MA0163.1;0.927936,MA0164.1;0.933981,MA0080.2;0.64167,MA0018.2;0.944669,MA0099.2;1.06348,MA0079.2;0.651053,MA0102.2;2.01714,MA0258.1;0.520639,MA0259.1;0.543506,MA0442.1;0
}}

Latest revision as of 20:18, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr6:38059320..38059402,+p1@Tmem213
Mm9::chr6:38059408..38059417,+p2@Tmem213
Mm9::chr6:38059548..38059574,-p6@Atp6v0a4


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0016471vacuolar proton-transporting V-type ATPase complex0.00679340382402893
GO:0033176proton-transporting V-type ATPase complex0.00679340382402893
GO:0015991ATP hydrolysis coupled proton transport0.00679340382402893
GO:0015988energy coupled proton transport, against electrochemical gradient0.00679340382402893
GO:0005774vacuolar membrane0.0101901057360434
GO:0044437vacuolar part0.0101901057360434
GO:0005903brush border0.0101901057360434
GO:0008553hydrogen-exporting ATPase activity, phosphorylative mechanism0.0101901057360434
GO:0016469proton-transporting two-sector ATPase complex0.013964218971615
GO:0015992proton transport0.0169835095600723
GO:0006818hydrogen transport0.0169835095600723
GO:0015662ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism0.0169835095600723
GO:0045177apical part of cell0.0196523467766551
GO:0042625ATPase activity, coupled to transmembrane movement of ions0.0196523467766551
GO:0015078hydrogen ion transmembrane transporter activity0.0202258159306316
GO:0015077monovalent inorganic cation transmembrane transporter activity0.0202258159306316
GO:0043492ATPase activity, coupled to movement of substances0.0202258159306316
GO:0042626ATPase activity, coupled to transmembrane movement of substances0.0202258159306316
GO:0016820hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances0.0202258159306316
GO:0015405P-P-bond-hydrolysis-driven transmembrane transporter activity0.0202258159306316
GO:0015399primary active transmembrane transporter activity0.0202258159306316
GO:0022890inorganic cation transmembrane transporter activity0.0202258159306316
GO:0005773vacuole0.0282073941389027
GO:0042623ATPase activity, coupled0.0318440804251356
GO:0016887ATPase activity0.035461567961431
GO:0015672monovalent inorganic cation transport0.0373637210321591
GO:0022804active transmembrane transporter activity0.0396281889735021
GO:0042995cell projection0.044157124856188
GO:0017111nucleoside-triphosphatase activity0.0472541177759659
GO:0008324cation transmembrane transporter activity0.0472541177759659
GO:0006812cation transport0.0472541177759659
GO:0016462pyrophosphatase activity0.0472541177759659
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides0.0472541177759659
GO:0016817hydrolase activity, acting on acid anhydrides0.0472541177759659



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
kidney8.20e-1314
kidney mesenchyme8.20e-1314
upper urinary tract8.20e-1314
kidney rudiment8.20e-1314
kidney field8.20e-1314
renal system1.98e-1119
urinary system structure1.94e-1018
lung1.95e-1014
respiratory tube1.95e-1014
respiration organ1.95e-1014
pair of lungs1.95e-1014
lung primordium1.95e-1014
lung bud1.95e-1014
epithelial bud5.31e-0817
thoracic cavity element5.31e-0817
thoracic segment organ5.31e-0817
thoracic cavity5.31e-0817
thoracic segment of trunk5.31e-0817
respiratory primordium5.31e-0817
endoderm of foregut5.31e-0817
cavitated compound organ2.78e-0721


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.526413
MA0004.10.801718
MA0006.10.60285
MA0007.10.784593
MA0009.11.27673
MA0014.10.133574
MA0017.11.5346
MA0019.12.45612
MA0024.11.23079
MA0025.11.51835
MA0027.12.9431
MA0028.10.61552
MA0029.11.20789
MA0030.11.21482
MA0031.11.17722
MA0038.10.963265
MA0040.11.28983
MA0041.10.714279
MA0042.10.69885
MA0043.11.3775
MA0046.11.31428
MA0048.10.353763
MA0050.10.845669
MA0051.10.973068
MA0052.11.29825
MA0055.10.557057
MA0056.10
MA0057.10.896032
MA0058.10.690848
MA0059.10.705317
MA0060.10.502699
MA0061.11.33581
MA0063.10
MA0066.10.951196
MA0067.11.63197
MA0068.10.343188
MA0069.11.29861
MA0070.11.28847
MA0071.10.844726
MA0072.11.2796
MA0073.10.439282
MA0074.10.911576
MA0076.10.657929
MA0077.11.2569
MA0078.11.0091
MA0081.10.732313
MA0083.11.37668
MA0084.11.96428
MA0087.11.33189
MA0088.10.27999
MA0089.10
MA0090.10.762482
MA0091.10.816659
MA0092.10.762845
MA0093.10.62555
MA0095.10
MA0098.10
MA0100.10.89873
MA0101.10.71579
MA0103.11.56167
MA0105.11.04599
MA0106.11.01755
MA0107.10.640607
MA0108.21.10817
MA0109.10
MA0111.10.778753
MA0113.10.986839
MA0114.11.3296
MA0115.11.38041
MA0116.10.602598
MA0117.11.34691
MA0119.10.716476
MA0122.11.36752
MA0124.11.57762
MA0125.11.5017
MA0130.10
MA0131.11.07881
MA0132.10
MA0133.10
MA0135.11.4152
MA0136.10.933582
MA0139.10.462282
MA0140.10.898603
MA0141.10.671467
MA0142.11.16183
MA0143.11.00467
MA0144.10.541532
MA0145.10.794492
MA0146.10.151124
MA0147.10.556853
MA0148.10.820161
MA0149.10.722227
MA0062.20.412742
MA0035.20.903829
MA0039.20.40695
MA0138.21.07027
MA0002.20.466067
MA0137.20.668025
MA0104.20.48458
MA0047.20.962424
MA0112.20.29236
MA0065.23.07166
MA0150.10.784464
MA0151.10
MA0152.10.962542
MA0153.11.43238
MA0154.10.925147
MA0155.12.3138
MA0156.10.656895
MA0157.11.12772
MA0158.10
MA0159.11.39671
MA0160.10.823568
MA0161.10
MA0162.10.166722
MA0163.10.927936
MA0164.10.933981
MA0080.20.64167
MA0018.20.944669
MA0099.21.06348
MA0079.20.651053
MA0102.22.01714
MA0258.10.520639
MA0259.10.543506
MA0442.10
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