FFCP PHASE1:Hg19::chr11:66112520..66112534,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25855 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17262 | |||
|TSSclassifier=strong | |||
|UniProt=E9PPD1 | |||
|association_with_transcript=15bp_to_ENST00000527375,ENST00000534617_5end | |||
|description=CAGE_peak_2_at_BRMS1_5end | |||
|id=chr11:66112520..66112534,- | |||
|ontology_enrichment_celltype=CL:0000220!6.50e-28!246;CL:0002321!1.79e-27!248;CL:0000066!2.46e-25!254;CL:0000548!5.58e-23!679;CL:0000004!5.58e-23!679;CL:0000255!5.58e-23!679;CL:0000012!5.84e-22!682;CL:0002076!1.67e-15!43;CL:0000223!2.88e-15!59;CL:0000003!5.12e-14!722;CL:0000076!1.78e-12!62;CL:0000144!4.65e-11!625;CL:0000063!1.77e-09!578;CL:0002371!1.21e-08!591;CL:0000222!1.41e-08!119;CL:0002251!1.05e-07!21;CL:0000183!1.33e-07!59;CL:0000192!2.07e-07!42;CL:0000514!2.07e-07!42;CL:0000680!3.44e-07!57;CL:0000056!3.44e-07!57;CL:0000355!3.44e-07!57;CL:0000393!8.33e-07!60;CL:0000211!8.33e-07!60;CL:0002159!9.63e-07!13;CL:0000187!9.98e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.20e-11;42!CL:0002251;1.49e-07;20!CL:0002159;4.25e-07;14!CL:0000076;8.61e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,7.56e-28,250;CL:0000066,3.78e-25,253;CL:0002076,3.10e-15,42;CL:0000223,5.44e-15,58;CL:0000076,9.64e-13,63;CL:0000222,7.92e-09,121;CL:0000192,1.51e-07,43;CL:0000514,1.51e-07,43;CL:0002251,1.92e-07,20;CL:0000680,2.51e-07,58;CL:0000056,2.51e-07,58;CL:0000355,2.51e-07,58;CL:0002159,5.50e-07,14;CL:0000393,6.11e-07,61;CL:0000211,6.11e-07,61;CL:0000187,7.31e-07,55 | |||
|ontology_enrichment_development_v019=CL:0000223;4.83e-08;58 | |||
|ontology_enrichment_disease=DOID:305!7.61e-12!106;DOID:0050687!1.34e-11!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,7.64e-12,106;DOID:0050687,1.35e-11,143 | |||
|ontology_enrichment_uberon=UBERON:0003104!1.76e-11!238;UBERON:0009142!1.76e-11!238;UBERON:0002100!4.69e-09!216;UBERON:0000486!1.74e-08!82;UBERON:0000923!2.67e-08!604;UBERON:0005291!2.67e-08!604;UBERON:0006598!2.67e-08!604;UBERON:0002532!2.67e-08!604;UBERON:0002050!5.02e-08!605;UBERON:0005423!5.02e-08!605;UBERON:0005256!6.74e-08!143;UBERON:0000926!1.07e-07!448;UBERON:0004120!1.07e-07!448;UBERON:0006603!1.07e-07!448;UBERON:0004290!2.46e-07!70;UBERON:0001637!2.51e-07!42;UBERON:0003509!2.51e-07!42;UBERON:0004572!2.51e-07!42;UBERON:0000922!2.91e-07!612;UBERON:0000467!7.06e-07!625;UBERON:0000914!8.89e-07!83;UBERON:0002329!8.89e-07!83;UBERON:0003077!8.89e-07!83;UBERON:0003059!8.89e-07!83;UBERON:0007282!8.89e-07!83;UBERON:0009618!8.89e-07!83;UBERON:0007285!8.89e-07!83 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.58e-09,199;UBERON:0007503,4.31e-09,78;UBERON:0000486,1.25e-08,83;UBERON:0005256,3.34e-08,122;UBERON:0003102,1.29e-07,99;UBERON:0002329,1.78e-07,71;UBERON:0003059,1.78e-07,71;UBERON:0007282,1.78e-07,71;UBERON:0004290,1.78e-07,71;UBERON:0009618,1.78e-07,71;UBERON:0001637,2.51e-07,42;UBERON:0003509,2.51e-07,42;UBERON:0004572,2.51e-07,42;UBERON:0005423,3.31e-07,581;UBERON:0007524,3.37e-07,73;UBERON:0003077,3.66e-07,72;UBERON:0007285,3.66e-07,72;UBERON:0000490,3.72e-07,148;UBERON:0003104,6.19e-07,160;UBERON:0009142,6.19e-07,160;UBERON:0000922,7.11e-07,592 | |||
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| |||
|short_description=p2@BRMS1 | |||
}} |
Revision as of 08:50, 11 January 2014
Short description: | p2@BRMS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_BRMS1_5end |
Coexpression cluster: | NA |
Association with transcript: | 15bp_to_ENST00000527375, ENST00000534617_5end |
EntrezGene: | BRMS1 |
HGNC: | 17262 |
UniProt: | E9PPD1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 7.56e-28 | 250 |
epithelial cell | 3.78e-25 | 253 |
endo-epithelial cell | 3.10e-15 | 42 |
endodermal cell | 5.44e-15 | 58 |
squamous epithelial cell | 9.64e-13 | 63 |
mesodermal cell | 7.92e-09 | 121 |
smooth muscle cell | 1.51e-07 | 43 |
smooth muscle myoblast | 1.51e-07 | 43 |
epithelial cell of alimentary canal | 1.92e-07 | 20 |
muscle precursor cell | 2.51e-07 | 58 |
myoblast | 2.51e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.51e-07 | 58 |
general ecto-epithelial cell | 5.50e-07 | 14 |
electrically responsive cell | 6.11e-07 | 61 |
electrically active cell | 6.11e-07 | 61 |
muscle cell | 7.31e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
trunk | 1.58e-09 | 199 |
epithelial vesicle | 4.31e-09 | 78 |
multilaminar epithelium | 1.25e-08 | 83 |
trunk mesenchyme | 3.34e-08 | 122 |
surface structure | 1.29e-07 | 99 |
somite | 1.78e-07 | 71 |
presomitic mesoderm | 1.78e-07 | 71 |
presumptive segmental plate | 1.78e-07 | 71 |
dermomyotome | 1.78e-07 | 71 |
trunk paraxial mesoderm | 1.78e-07 | 71 |
artery | 2.51e-07 | 42 |
arterial blood vessel | 2.51e-07 | 42 |
arterial system | 2.51e-07 | 42 |
developing anatomical structure | 3.31e-07 | 581 |
dense mesenchyme tissue | 3.37e-07 | 73 |
paraxial mesoderm | 3.66e-07 | 72 |
presumptive paraxial mesoderm | 3.66e-07 | 72 |
unilaminar epithelium | 3.72e-07 | 148 |
mesenchyme | 6.19e-07 | 160 |
entire embryonic mesenchyme | 6.19e-07 | 160 |
embryo | 7.11e-07 | 592 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 7.64e-12 | 106 |
cell type cancer | 1.35e-11 | 143 |