FFCP PHASE1:Hg19::chr14:35761580..35761664,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5687 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9535 | |||
|TSSclassifier=strong | |||
|UniProt=G3V2S7,G3V5Z7,G3V3U4,G3V3I1,B4DQR4 | |||
|association_with_transcript=0bp_to_ENST00000553688,ENST00000553809,ENST00000554620,ENST00000554843,ENST00000554961,ENST00000555764,ENST00000556167,uc010tpu.1_5end | |||
|description=CAGE_peak_1_at_PSMA6_5end | |||
|id=chr14:35761580..35761664,+ | |||
|ontology_enrichment_celltype=CL:0000012!6.61e-28!682;CL:0000548!3.17e-27!679;CL:0000004!3.17e-27!679;CL:0000255!3.17e-27!679;CL:0000063!1.09e-17!578;CL:0000003!9.91e-17!722;CL:0000034!3.59e-16!444;CL:0000144!3.34e-15!625;CL:0000723!1.66e-14!436;CL:0000048!3.72e-14!430;CL:0002371!2.05e-11!591;CL:0000134!4.72e-10!358;CL:0002009!7.42e-10!65;CL:0002320!2.75e-09!365;CL:0002194!3.52e-09!63;CL:0000576!3.52e-09!63;CL:0000040!3.52e-09!63;CL:0000559!3.52e-09!63;CL:0000839!6.08e-09!70;CL:0000219!1.34e-08!390;CL:0000557!1.40e-08!71;CL:0000860!2.10e-08!45;CL:0000763!1.40e-07!112;CL:0000049!1.40e-07!112;CL:0002057!3.82e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.11e-07;33!CL:0002057;2.11e-07;33!CL:0000473;5.24e-07;39!CL:0000234;5.24e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000034,9.64e-15,441;CL:0000723,3.65e-13,433;CL:0000048,7.79e-13,427;CL:0000134,3.08e-09,354;CL:0002009,5.76e-09,61;CL:0002320,1.65e-08,361;CL:0002194,2.65e-08,59;CL:0000576,2.65e-08,59;CL:0000040,2.65e-08,59;CL:0000559,2.65e-08,59;CL:0000839,4.34e-08,66;CL:0000473,5.18e-08,48;CL:0000234,5.18e-08,48;CL:0000219,7.45e-08,386;CL:0000557,9.64e-08,67;CL:0000860,3.82e-07,42;CL:0002057,3.82e-07,42;CL:0000763,7.34e-07,108;CL:0000049,7.34e-07,108 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!1.15e-15!239;DOID:162!4.91e-15!235;DOID:305!4.91e-11!106;DOID:0050686!8.12e-09!137;DOID:0050687!2.48e-08!143;DOID:120!5.30e-07!27 | |||
|ontology_enrichment_disease_v019=DOID:120;5.51e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,1.15e-15,239;DOID:162,4.91e-15,235;DOID:305,4.91e-11,106;DOID:0050686,8.12e-09,137;DOID:0050687,2.48e-08,143;DOID:120,5.30e-07,27 | |||
|ontology_enrichment_uberon=UBERON:0002384!1.03e-08!375;UBERON:0001474!6.56e-08!86;UBERON:0002371!1.02e-07!80;UBERON:0002204!1.52e-07!167;UBERON:0004765!2.48e-07!101;UBERON:0001434!2.48e-07!101;UBERON:0003100!5.49e-07!41 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,5.79e-08,371;UBERON:0004765,1.86e-07,90;UBERON:0001474,3.96e-07,82;UBERON:0003100,5.49e-07,41;UBERON:0002371,6.25e-07,76 | |||
|phase1_expression=145.706060174986,118.825790759496,167.453832066014,143.104816644976,99.2253629628579,98.5742532233417,189.974908626233,176.249844686086,104.474251279935,93.1331619340719,37.6812630705111,63.7848806620103,57.5012012538029,99.0130823680373,81.5237544290673,121.01852636132,84.3772339233568,98.5918622022954,104.905551739959,94.9263357772035,50.3881707373305,30.7185627048526,85.584560152186,76.1021803405236,70.0527928939,157.946509681015,175.777362012334,168.283650448646,65.2984699569181,64.8671682784289,75.5502681782451,99.2974922437241,86.1448927705795,58.7908876165192,82.1152326151197,72.0798008711227,137.111405169374,53.1835592190602,47.1279451554833,62.7161416368812,76.5790921900541,108.504378116358,62.075711799839,102.214961862034,77.4645684562059,94.6077838632483,107.382215050426,78.9442345001905,155.162891818447,159.093892954149,102.46428261164,220.63792048605,124.797936426656,87.1404322838165,158.44898931538,146.640782503689,98.2462140208245,267.196223005206,192.220684408927,111.683301422481,186.68644073332,113.46884726423,83.7747362010854,130.850998413537,574.033874007339,257.592892009777,570.505180079947,122.860597310547,81.8728181919716,177.44328612408,415.304058806491,248.587404291606,763.623740894854,119.781747338871,101.624855383291,143.196854882221,85.4820883024828,98.3658648111866,67.8261975861678,116.000186702688,87.3244212904006,103.205246877018,61.5986855614629,60.6213858500966,64.044666278176,66.5699147203751,55.2546462109697,63.2227683949932,54.8667244411436,43.8864727086267,15.3687501659551,35.8214685516273,22.9363936875137,77.9810838616253,84.0762844472304,164.615052984423,44.2596982756124,31.4408610199332,54.6899987338695,66.3730386700992,50.5179513282065,48.2916761849428,48.7066821019778,78.5443721040474,69.2323882565867,80.8598715230217,58.4936345732434,74.8053307197943,80.5067361395646,68.8994820289403,63.2841540729593,63.7566788617115,41.5202376853769,33.9776851673936,37.6327885697916,67.7589869331446,65.1474839123266,68.0382342055607,55.6643322442906,59.5717324786061,55.993177031652,67.4820951558346,54.357617987076,61.3055867429664,68.7118996037902,61.3253082794004,60.7634717721574,41.5309891042949,41.1857901506601,32.2958420658642,14.6284119788377,79.1427014450291,127.86256184353,86.3839574199113,97.7608925739985,86.4733718196118,90.6625979638253,49.1501219005662,97.9380705819743,78.4922067017476,74.3960634820778,52.9155465010759,36.4295288292542,54.5053130893111,137.283547515931,112.661940032626,87.752253942451,119.960784025587,113.254992334465,150.811745539803,84.275260723483,128.174954670813,111.779241517645,62.7491815535651,129.625325788861,51.1719558008525,84.0159765477978,87.3448645992332,83.2493054686902,68.2830050039927,179.66187543068,249.369250675672,98.8451333070087,171.698658521521,54.2795105080779,78.405161433422,54.1115788029069,52.2517269442615,85.8573169808946,74.042721446314,133.004466093476,76.4326421129167,85.3116581126316,56.6922267785295,83.9882598365088,133.595189806132,116.784897477259,82.3221101549095,111.720540392482,96.4365472244768,118.491385259973,109.273723948802,61.6197850091537,84.0594593714853,97.7502180618483,73.2569949801468,70.2934627865599,47.5672506622607,91.7750625881142,156.879750924724,128.974211316204,82.6738870452105,80.1271074622251,85.8154428950738,75.5370433643105,85.738353483614,62.3054460489866,86.7242085815899,67.2566047637675,45.5080680969013,30.9005800980983,75.4145790514217,57.0540450616157,64.5559389078146,87.3565465552867,79.0738513161471,62.7995086229575,130.106714084544,101.713923435585,123.649728125951,92.8261727078881,86.4262356723079,84.9152840924737,89.4012673958333,94.361246160116,73.9240335216746,101.62679638313,89.3615560824165,68.7612742857976,90.3601457617158,71.0019185033229,107.502488808892,123.100990017414,145.332161578799,169.92083312809,77.437240755031,129.292128497371,136.240601834487,162.206744245848,121.905400698076,168.802649235795,164.239811584123,184.610448149183,80.4051172741107,171.287302477076,61.2965665002212,90.2349352086982,150.486249650681,142.285478425918,145.088639989856,153.639504016225,147.286504206467,148.056866325324,167.730147351245,164.43358777504,151.205632679931,64.2195245523444,46.2797853551371,49.388881359768,32.3419165048192,50.7020139287323,50.1241880505589,57.8974108547776,212.343750818447,98.7597161501202,128.504289913596,45.436618159171,157.362454560667,147.777589445097,97.7733980874072,69.3971690310992,39.517521840624,106.805193098702,93.555836814887,92.8702771405349,166.598880716279,148.618349537092,139.646547740195,224.418049020434,236.08369457609,110.551435733241,140.402559083543,149.077055775594,164.03420947686,168.990020968053,127.881137712633,143.741428938072,170.89275584621,106.197002128764,124.643799187674,122.651468580424,65.3083563953432,67.159898292304,54.5367312401961,78.8008868165818,55.006333280392,45.7148044119183,51.3217338068116,71.3622799361065,64.2734143785983,59.4518979871603,77.5947103669896,77.1649321834906,89.1793555582752,114.146925014118,10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| |||
|short_description=p1@PSMA6 | |||
}} |
Revision as of 19:43, 11 January 2014
Short description: | p1@PSMA6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PSMA6_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000553688, ENST00000553809, ENST00000554620, ENST00000554843, ENST00000554961, ENST00000555764, ENST00000556167, uc010tpu.1_5end |
EntrezGene: | PSMA6 |
HGNC: | 9535 |
UniProt: | G3V2S7G3V5Z7G3V3U4G3V3I1B4DQR4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stem cell | 9.64e-15 | 441 |
somatic stem cell | 3.65e-13 | 433 |
multi fate stem cell | 7.79e-13 | 427 |
mesenchymal cell | 3.08e-09 | 354 |
macrophage dendritic cell progenitor | 5.76e-09 | 61 |
connective tissue cell | 1.65e-08 | 361 |
monopoietic cell | 2.65e-08 | 59 |
monocyte | 2.65e-08 | 59 |
monoblast | 2.65e-08 | 59 |
promonocyte | 2.65e-08 | 59 |
myeloid lineage restricted progenitor cell | 4.34e-08 | 66 |
defensive cell | 5.18e-08 | 48 |
phagocyte | 5.18e-08 | 48 |
motile cell | 7.45e-08 | 386 |
granulocyte monocyte progenitor cell | 9.64e-08 | 67 |
classical monocyte | 3.82e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.82e-07 | 42 |
myeloid cell | 7.34e-07 | 108 |
common myeloid progenitor | 7.34e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 5.79e-08 | 371 |
skeletal element | 1.86e-07 | 90 |
bone element | 3.96e-07 | 82 |
female organism | 5.49e-07 | 41 |
bone marrow | 6.25e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 1.15e-15 | 239 |
cancer | 4.91e-15 | 235 |
carcinoma | 4.91e-11 | 106 |
organ system cancer | 8.12e-09 | 137 |
cell type cancer | 2.48e-08 | 143 |
female reproductive organ cancer | 5.30e-07 | 27 |