FFCP PHASE1:Hg19::chr17:79989607..79989618,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5881 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9803 | |||
|TSSclassifier=strong | |||
|UniProt=P60763 | |||
|association_with_transcript=75bp_to_ENST00000306897,NM_005052,uc002kdf.2_5end | |||
|coexpression_cluster_id=C3700 | |||
|description=CAGE_peak_4_at_RAC3_5end | |||
|id=chr17:79989607..79989618,+ | |||
|ontology_enrichment_celltype=CL:0000133!3.10e-09!59;CL:0002319!8.88e-09!25;CL:0002321!2.76e-07!248;CL:0000333!4.75e-07!41;CL:0000220!8.56e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0000128;6.12e-13;7!CL:0000126;6.12e-13;7!CL:0000127;6.12e-13;7!CL:0002603;1.48e-11;3!CL:0000243;1.69e-09;15!CL:0000125;1.69e-09;15!CL:0002319;2.90e-09;25!CL:0000095;2.16e-08;17!CL:0002363;5.30e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,3.03e-13,7;CL:0000126,3.03e-13,7;CL:0000127,3.03e-13,7;CL:0002453,3.03e-13,7;CL:0002603,8.88e-12,3;CL:0000243,1.66e-09,15;CL:0000125,1.66e-09,15;CL:0000030,1.66e-09,15;CL:0000339,1.66e-09,15;CL:0002319,2.30e-09,25;CL:0000095,2.12e-08,17;CL:0000123,2.12e-08,17;CL:0000133,2.55e-08,59;CL:0002363,8.47e-08,2;CL:0000008,8.47e-08,2;CL:0000333,8.95e-08,41 | |||
|ontology_enrichment_development_v019=CL:0000339;1.69e-09;15!CL:0000008;5.30e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.83e-16!94;UBERON:0001016!3.83e-16!94;UBERON:0005743!7.66e-14!86;UBERON:0001017!9.66e-13!82;UBERON:0000924!1.56e-12!173;UBERON:0006601!1.56e-12!173;UBERON:0004121!1.83e-12!169;UBERON:0000033!3.17e-10!123;UBERON:0003075!3.40e-10!86;UBERON:0007284!3.40e-10!86;UBERON:0002346!3.71e-10!90;UBERON:0000119!5.14e-10!312;UBERON:0000483!1.89e-09!309;UBERON:0000955!2.22e-09!69;UBERON:0006238!2.22e-09!69;UBERON:0000153!2.31e-09!129;UBERON:0007811!2.31e-09!129;UBERON:0002616!6.73e-09!59;UBERON:0001049!7.76e-08!57;UBERON:0005068!7.76e-08!57;UBERON:0006241!7.76e-08!57;UBERON:0007135!7.76e-08!57;UBERON:0003056!4.15e-07!61;UBERON:0000922!8.93e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;7.99e-10;6!UBERON:0003891;9.00e-09;4!UBERON:0003566;5.30e-08;2!UBERON:0001777;5.30e-08;2!UBERON:0004733;2.97e-07;12!UBERON:0002028;2.97e-07;12!UBERON:0002021;3.59e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,6.41e-10,6;UBERON:0006215,6.41e-10,6;UBERON:0003891,1.37e-08,4;UBERON:0003075,1.49e-08,82;UBERON:0007284,1.49e-08,82;UBERON:0002346,5.52e-08,86;UBERON:0003566,8.47e-08,2;UBERON:0001777,8.47e-08,2;UBERON:0001017,1.34e-07,81;UBERON:0001016,1.92e-07,89;UBERON:0004733,2.85e-07,12;UBERON:0002028,2.85e-07,12;UBERON:0007277,2.85e-07,12;UBERON:0000073,3.19e-07,53;UBERON:0002616,3.19e-07,53;UBERON:0000955,4.13e-07,68;UBERON:0006238,4.13e-07,68;UBERON:0002021,4.76e-07,5 | |||
|phase1_expression=0,0,0.281908808191942,0,0,0,0,0,0.522371256399677,0.245733936501509,0,0.218441372130172,0.791300934685361,0.618831764800233,0.662794751455832,0,0,0,0,1.23121058076788,1.63200552995402,2.19418305034661,0.572471974262113,1.50561867580173,2.51085279189606,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,0,0,0.144846518960824,0,0,0.661743720148475,1.10864698731282,0.87834785693126,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0.419499436209906,0.275118041940067,0.835979866147242,0,0,0,0,0,0.732186172644509,0.367663080345869,0.81014194788176,0.267899184852239,0.898117490504679,0.337834441449967,1.53316637465883,1.89853131913626,0.916008719652036,0,0,0,0,0.12663051166458,0.397227542439656,0,0.354668382198357,0,0,0.98667019366864,0,0.269421344139376,0,0.302714855289863,0.576175924479999,0,0.624320153660641,0,0.896692083310806,0.822041490506354,0.323745888736263,0.561803226808994,0,0.491337269247072,0.723280468230358,0,0,0,0,0.336672227908132,0.500474079487857,0,0,0.30648779579902,0.300476117813194,0.453728732640084,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0.731842236777572,0.927708378250397,0.813357600086629,0.725627385107593,0.756962552626885,1.09493207722749,0,0,0,0,0,0.118306800039844,0,0,0,0,0.237270619111097,0,0,0,1.4763109092493,0,0.4115740113314,1.47008711385542,0,0,0,0,0.368965315629341,0.514703430895577,0.109750285408626,0,0,0.0925884451585296,1.3032332212413,1.03993478527958,1.44331342025273,0.463721619900307,0.117408694235822,0.144366447761074,0.925971025153221,0,0.790204397959275,0,0,0,0,0.93733833986777,0,0,0,0.290633938513962,0.383382679165211,0,0.176096868026452,0,0,0.12624243342638,0.190493682876507,0,0,1.71072446022705,1.13110241973656,0.600686115687835,0.285826432630578,0.224262168690721,0.43596006883328,0.5867062865676,0.258543431515556,7.15312891703765,0,0.26593811658487,1.04007436911366,0.514414748524284,0,0.799266537048298,0,1.08524321078289,0,0.325736184293735,0,0.791951872933429,0,0,0,0,0,0,0.239624855491583,0,0,0.289562613335158,0.205476322550383,0,0.112085143993527,0,0,0,0.76228387266739,0,0.773288812777695,2.17771144934653,1.91381625495949,0,0,0,0.36807447515742,1.00034104211935,0.813795071099207,0,0,0.315404830067869,0,0,0,5.17365356462525,0,0.368738337083406,0,0.391602314925481,1.71571711905428,0,0,0,0,0,0.30239029332968,0,0.153461973288062,0,0,0.511707249066704,0,0,0,0,0,0,0,0.483437798366489,0,0.0920809889358963,0,0,0.262248829918848,0.902399225814824,0.15403067420883,1.56869953835371,0,0.73886140225013,0,0,0.647747748306418,0,0.270946437543853,2.00675909541941,0.254876273045038,0.831076008928724,0,0,0,0.769350375349168,0.328014645699706,0.650756789328606,0,1.19040304263846,0.82509499920588,0,0,0,0.48335359146061,0.616194468458578,0.15350367472613,0.137836572484531,0.214840489736547,0.725083469571143,0.681813019328807,0.0890320356467374,0.165284915360978,0.192190067365106,0,0.10115778085555,0,0,0.6970372701606,0,0.532306030317022,0,0,0.143124886741991,0.372158369359667,0.632758849437452,0.190630193923825,0.255897791311334,0.42793898803392,0.636406495851874,0.78494864019923,0.359744915166629,0.274537029736055,0.235624804691373,0.606547444719948,0,0,0.48763373908959,0,0,0,0.141405431953713,0,0,0,0,0,0,0.608731130888112,0.6196469961995,0.563391205064483,0.286822704408103,0.589494246078727,0,0,0,0,0,2.44954304171488,0,0,1.08890984861323,0,0.43050537267123,0,0.443430153536676,0,0,0,0,0,0,0,0,0,1.6023610669121,0,0.245040215981032,0,0,0,0.159426272728822,0.399158742865633,0.191505370132367,0,1.29848776109822,0,0.456469358066384,0.313359791546046,0,0,0,0.201799707191048,0,0.343505344755765,0,0.223676107892416,0.333698283423817,0.19538809540204,0,0,1.35227839237992,0,0,0.18714054040822,0,0.121360521749513,0,0,0,0,0,0.994147647766298,0.140669416410513,0.445234820091624,0,0,0,0,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0.185536196323703,15.9691038400955,0,0,0.724999575434793,0.682760689712998,0.508507300585533,0.236387681767936,1.03423011972439,0,1.21537496453305,0,0,0,0.110579259931225,1.18219047581419,0.87754158861589,0,0,0,0,0.46112780877612,0.628303510868405,0,0,0.183195186803725,0.533034776018635,0,1.2558420511602,0.664846727600626,0.225595660617181,0.19606253431774,0.503464760927528,0.189753732724185,0.953619473882272,0.210998064528027,0.163232808159148,0.706765357169704,1.08194319871046,0,0.176915129006678,0,0,0.247127877893006,0.104421949505455,0.202203398942031,0.802577647298789,0.234264445725339,0,0.19566461893209,0.242780379534093,0,0,4.89716418608784,0.189559738885464,0.150323419414493,0.414752765588989,0.664653872707185,0.330991955875499,0.313932918407225,0,0,0.416024019039416,0.347119476670262,0.195984794828755,0.174118413160805,0,0,0.0967563312890851,0.0730893170861856,0,0,0,0.677942222341597,0.137041924646751,0,0.316553979779393,0.195551382734803,0,0,0.39961921916426,0,0.114536596165916,1.88754497648161,0,0.124252535565433,0,0,0,0.203996435272644,1.15580235960608,0,0.136905378891993,1.27746588066972,0,0,0,0,0,0.599037001496973,0,0.223171457441873,0,0,2.32991899054908,0.0787831823072236,0,0,0.0984274815147488,0.254019996197353,0,0.272406812223151,0.964518890790115,0.962776056180637,0.415440338029185,0,0,0.364497339948148,0,0.0788057072991982,0.104909176269996,0,0.537862017998534,0.191915197319445,0,0,0.25426853765475,0,0,0.326587360109409,0,1.55975789423744,0.170388021785422,0.339936274560377,0,0,0.517131825446202,0.52893040697076,0,0,0.106787412567695,0,0,0,0,0,1.27668251554036,0,0.5013797880454,0,0.327872630709804,0.628216385000937,0,0.610131324509816,0.500763722825999,1.14681839138014,0.443716206147409,0.372578417648301,0.830091809617385,0.37494122388632,0,0.285465333544967,0,0,0.579684114443301,0,0,0.554805861502613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0.57785949122191,0,0.260994291965212,0,0,0.244736704506468,0.537266523244462,0,0.219284049578707,1.23682402162117,0,0.168942440653073,0,0.690860683462397,0,0,0.194860308839388,0,0,0.327609848846413,0,0,0,0.106691729694141,0.172214979660816,0,0,0.139879507719444,0,0.895260599125562,0.107824811396682,0.314531883711793,0.982886743728125,0.848662649770126,0,0,0.558644917973244,0.636008701306837,0.23658523500376,0,0,0.3062454773532,0.321146125482298,1.41696576325585,0,1.02558182120378,12.0994414186425,0.622415272177961,0.645902582527404,0,0.196295437002051,0.943757786781923,0,0,0,0,0.795664888465099,0,0,0,0,1.47394725759087,0.295712172434091,0.202612753855184,0,0.413373593002368,0.19024743058172,7.65764732625507,0,0,0.351742488719241,0.383287282918786,0,0,0,0,0.0887023701626388,0,0.342976018874837,0.815636795721981,0.394636641377094,0.236387681767936,0,0,0.157115589916002,0,0,0.215927591218621,0,0.142953088353313,0,0.697448552208751,0.173858272302579,0,0,0.51215543128185,0,0,0.354996002191696,1.02256085710989,0,0,0.31020638566432,0,0,0.196300467230486,0,0,0,0,0.485710993059139,0.233939463462106,0.397901550322736,0.118920090777569,0.45178432815584,0.329821550236287,0.150962843566674,0,0.218559560503957,0,0,0.235676547101626,0.392616934229891,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0.143339583151451,0.157771562193185,0.475940431336403,3.49080552272302,0,0,0,0,0.756998549010474,0.327796715891087,1.14028650910293,0.61193297845189,1.06886962106224,0.0918948995348449,0.50141507858475,0.530450887527676,0.535928260312357,0,0.310298987585686,0,0.23806443146374,0,0,0.112131862580613,0.0636471582781649,0.202117188958219,0.217716747896961,0,0.0673520530145875,0,0.665320713092027,0.488419611665847,1.06727345877715,0,0.179650404213174,0,0,0,0,0.201273793591026,0 | |||
|short_description=p4@RAC3 | |||
}} |
Revision as of 18:06, 20 January 2014
Short description: | p4@RAC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RAC3_5end |
Coexpression cluster: | C3700_occipital_brain_temporal_duodenum_parietal_Renal_Neurons |
Association with transcript: | 75bp_to_ENST00000306897, NM_005052, uc002kdf.2_5end |
EntrezGene: | RAC3 |
HGNC: | 9803 |
UniProt: | P60763 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 3.03e-13 | 7 |
macroglial cell | 3.03e-13 | 7 |
astrocyte | 3.03e-13 | 7 |
oligodendrocyte precursor cell | 3.03e-13 | 7 |
astrocyte of the cerebellum | 8.88e-12 | 3 |
glial cell (sensu Vertebrata) | 1.66e-09 | 15 |
glial cell | 1.66e-09 | 15 |
glioblast | 1.66e-09 | 15 |
glioblast (sensu Vertebrata) | 1.66e-09 | 15 |
neural cell | 2.30e-09 | 25 |
neuron associated cell | 2.12e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 2.12e-08 | 17 |
neurectodermal cell | 2.55e-08 | 59 |
keratocyte | 8.47e-08 | 2 |
migratory cranial neural crest cell | 8.47e-08 | 2 |
migratory neural crest cell | 8.95e-08 | 41 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 6.41e-10 | 6 |
rhombic lip | 6.41e-10 | 6 |
stroma | 1.37e-08 | 4 |
neural plate | 1.49e-08 | 82 |
presumptive neural plate | 1.49e-08 | 82 |
neurectoderm | 5.52e-08 | 86 |
head connective tissue | 8.47e-08 | 2 |
substantia propria of cornea | 8.47e-08 | 2 |
central nervous system | 1.34e-07 | 81 |
nervous system | 1.92e-07 | 89 |
segmental subdivision of hindbrain | 2.85e-07 | 12 |
hindbrain | 2.85e-07 | 12 |
presumptive hindbrain | 2.85e-07 | 12 |
regional part of nervous system | 3.19e-07 | 53 |
regional part of brain | 3.19e-07 | 53 |
brain | 4.13e-07 | 68 |
future brain | 4.13e-07 | 68 |
occipital lobe | 4.76e-07 | 5 |