FFCP PHASE1:Hg19::chr18:9334755..9334778,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57045 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12429 | |||
|TSSclassifier=strong | |||
|UniProt=Q9GZX9 | |||
|association_with_transcript=0bp_to_ENST00000262120,NM_020648,uc002knz.2,uc002koa.2_5end | |||
|coexpression_cluster_id=C3743 | |||
|description=CAGE_peak_2_at_TWSG1_5end | |||
|id=chr18:9334755..9334778,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.54e-26!180;CL:0000057!6.78e-14!75;CL:0000680!2.13e-12!57;CL:0000056!2.13e-12!57;CL:0000355!2.13e-12!57;CL:0000187!1.03e-11!54;CL:0000393!7.16e-11!60;CL:0000211!7.16e-11!60;CL:0000183!4.74e-10!59;CL:0000192!1.05e-09!42;CL:0000514!1.05e-09!42;CL:0000222!2.37e-09!119;CL:0000499!9.56e-09!27;CL:0000220!1.03e-08!246;CL:0002321!1.27e-08!248;CL:0002620!2.60e-08!23;CL:0000359!2.19e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000499;2.32e-09;28!CL:0002620;2.78e-08;23!CL:0000192;1.87e-07;43!CL:0000187;2.58e-07;55!CL:0000359;4.40e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.99e-14,76;CL:0000680,1.18e-12,58;CL:0000056,1.18e-12,58;CL:0000355,1.18e-12,58;CL:0000187,5.72e-12,55;CL:0000393,4.03e-11,61;CL:0000211,4.03e-11,61;CL:0000192,5.89e-10,43;CL:0000514,5.89e-10,43;CL:0000222,1.41e-09,121;CL:0000499,2.41e-09,28;CL:0002321,7.82e-09,250;CL:0002620,2.59e-08,23;CL:0000359,2.19e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;1.87e-07;43!CL:0000355;5.41e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.47e-14!83;UBERON:0002329!1.47e-14!83;UBERON:0003077!1.47e-14!83;UBERON:0003059!1.47e-14!83;UBERON:0007282!1.47e-14!83;UBERON:0009618!1.47e-14!83;UBERON:0007285!1.47e-14!83;UBERON:0002100!1.33e-13!216;UBERON:0005256!4.65e-13!143;UBERON:0000486!1.01e-12!82;UBERON:0004290!2.15e-12!70;UBERON:0000475!1.16e-11!365;UBERON:0001134!1.77e-11!61;UBERON:0002036!1.77e-11!61;UBERON:0003082!1.77e-11!61;UBERON:0002385!2.67e-11!63;UBERON:0001015!2.67e-11!63;UBERON:0000383!2.67e-11!63;UBERON:0000490!2.28e-10!138;UBERON:0003102!5.16e-10!95;UBERON:0003104!2.52e-09!238;UBERON:0009142!2.52e-09!238;UBERON:0002049!8.88e-09!79;UBERON:0007798!8.88e-09!79;UBERON:0000468!1.21e-08!659;UBERON:0004872!2.79e-08!84;UBERON:0002199!3.16e-07!45;UBERON:0002416!3.16e-07!45;UBERON:0000481!5.67e-07!347;UBERON:0001981!6.27e-07!60;UBERON:0007500!6.27e-07!60;UBERON:0004537!6.27e-07!60;UBERON:0006965!6.27e-07!60 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,5.09e-15,160;UBERON:0009142,5.09e-15,160;UBERON:0000486,5.69e-13,83;UBERON:0002329,1.20e-12,71;UBERON:0003059,1.20e-12,71;UBERON:0007282,1.20e-12,71;UBERON:0004290,1.20e-12,71;UBERON:0009618,1.20e-12,71;UBERON:0007524,1.28e-12,73;UBERON:0003077,2.97e-12,72;UBERON:0007285,2.97e-12,72;UBERON:0005256,6.53e-12,122;UBERON:0001134,9.89e-12,62;UBERON:0002036,9.89e-12,62;UBERON:0003082,9.89e-12,62;UBERON:0000490,1.25e-11,148;UBERON:0002385,1.50e-11,64;UBERON:0001015,1.50e-11,64;UBERON:0000383,1.50e-11,64;UBERON:0002100,2.23e-11,199;UBERON:0007503,6.34e-11,78;UBERON:0003102,3.63e-10,99;UBERON:0002049,2.40e-08,78;UBERON:0007798,2.40e-08,78;UBERON:0004872,7.12e-08,83;UBERON:0002199,1.32e-07,46;UBERON:0002416,1.32e-07,46 | |||
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| |||
|short_description=p2@TWSG1 | |||
}} |
Revision as of 18:31, 20 January 2014
Short description: | p2@TWSG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TWSG1_5end |
Coexpression cluster: | C3743_Smooth_Fibroblast_clear_basal_normal_sacrococcigeal_Preadipocyte |
Association with transcript: | 0bp_to_ENST00000262120, NM_020648, uc002knz.2, uc002koa.2_5end |
EntrezGene: | TWSG1 |
HGNC: | 12429 |
UniProt: | Q9GZX9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.99e-14 | 76 |
muscle precursor cell | 1.18e-12 | 58 |
myoblast | 1.18e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.18e-12 | 58 |
muscle cell | 5.72e-12 | 55 |
electrically responsive cell | 4.03e-11 | 61 |
electrically active cell | 4.03e-11 | 61 |
smooth muscle cell | 5.89e-10 | 43 |
smooth muscle myoblast | 5.89e-10 | 43 |
mesodermal cell | 1.41e-09 | 121 |
stromal cell | 2.41e-09 | 28 |
embryonic cell | 7.82e-09 | 250 |
skin fibroblast | 2.59e-08 | 23 |
vascular associated smooth muscle cell | 2.19e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 5.09e-15 | 160 |
entire embryonic mesenchyme | 5.09e-15 | 160 |
multilaminar epithelium | 5.69e-13 | 83 |
somite | 1.20e-12 | 71 |
presomitic mesoderm | 1.20e-12 | 71 |
presumptive segmental plate | 1.20e-12 | 71 |
dermomyotome | 1.20e-12 | 71 |
trunk paraxial mesoderm | 1.20e-12 | 71 |
dense mesenchyme tissue | 1.28e-12 | 73 |
paraxial mesoderm | 2.97e-12 | 72 |
presumptive paraxial mesoderm | 2.97e-12 | 72 |
trunk mesenchyme | 6.53e-12 | 122 |
skeletal muscle tissue | 9.89e-12 | 62 |
striated muscle tissue | 9.89e-12 | 62 |
myotome | 9.89e-12 | 62 |
unilaminar epithelium | 1.25e-11 | 148 |
muscle tissue | 1.50e-11 | 64 |
musculature | 1.50e-11 | 64 |
musculature of body | 1.50e-11 | 64 |
trunk | 2.23e-11 | 199 |
epithelial vesicle | 6.34e-11 | 78 |
surface structure | 3.63e-10 | 99 |
vasculature | 2.40e-08 | 78 |
vascular system | 2.40e-08 | 78 |
splanchnic layer of lateral plate mesoderm | 7.12e-08 | 83 |
integument | 1.32e-07 | 46 |
integumental system | 1.32e-07 | 46 |