FFCP PHASE1:Hg19::chr3:45635661..45635711,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8994 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6612 | |||
|TSSclassifier=strong | |||
|UniProt=C9JRJ5 | |||
|association_with_transcript=-104bp_to_ENST00000440097_5end | |||
|description=CAGE_peak_2_at_LIMD1_5end | |||
|id=chr3:45635661..45635711,+ | |||
|ontology_enrichment_celltype=CL:0000037!3.70e-30!172;CL:0000566!3.70e-30!172;CL:0000988!7.52e-30!182;CL:0002032!5.21e-29!165;CL:0000837!5.21e-29!165;CL:0000557!9.95e-29!71;CL:0002087!1.02e-27!119;CL:0002031!2.05e-26!124;CL:0002009!2.20e-26!65;CL:0002194!3.87e-26!63;CL:0000576!3.87e-26!63;CL:0000040!3.87e-26!63;CL:0000559!3.87e-26!63;CL:0000763!5.79e-26!112;CL:0000049!5.79e-26!112;CL:0000839!8.87e-26!70;CL:0000738!2.86e-25!140;CL:0000766!2.91e-22!76;CL:0000860!7.64e-22!45;CL:0002057!7.73e-22!42 | |||
|ontology_enrichment_celltype_v019=CL:0000576;3.34e-16;48!CL:0000860;6.83e-16;33!CL:0002057;6.83e-16;33!CL:0000473;4.61e-15;39!CL:0000234;4.61e-15;39!CL:0000766;8.78e-11;69!CL:0002087;1.87e-09;104!CL:0000763;8.96e-09;100!CL:0000738;4.30e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,6.55e-30,168;CL:0000988,1.45e-29,177;CL:0000557,8.32e-29,67;CL:0002032,8.99e-29,161;CL:0000837,8.99e-29,161;CL:0002087,1.81e-27,115;CL:0002009,1.77e-26,61;CL:0002194,2.97e-26,59;CL:0000576,2.97e-26,59;CL:0000040,2.97e-26,59;CL:0000559,2.97e-26,59;CL:0002031,3.90e-26,120;CL:0000763,7.74e-26,108;CL:0000049,7.74e-26,108;CL:0000839,8.70e-26,66;CL:0000738,4.85e-25,136;CL:0000473,1.54e-23,48;CL:0000234,1.54e-23,48;CL:0000766,2.97e-22,72;CL:0000860,7.62e-22,42;CL:0002057,7.62e-22,42 | |||
|ontology_enrichment_development_v019=CL:0002057;3.04e-16;42!CL:0000049;2.28e-08;108 | |||
|ontology_enrichment_disease=DOID:1240!4.78e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:1240,4.45e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0002193!6.60e-32!112;UBERON:0002390!1.65e-31!102;UBERON:0003061!1.65e-31!102;UBERON:0001474!9.25e-28!86;UBERON:0002371!2.13e-27!80;UBERON:0002405!3.77e-24!115;UBERON:0004765!1.25e-22!101;UBERON:0001434!1.25e-22!101;UBERON:0003081!2.75e-17!216;UBERON:0002204!8.73e-10!167;UBERON:0000926!2.02e-08!448;UBERON:0004120!2.02e-08!448;UBERON:0006603!2.02e-08!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.18e-31,108;UBERON:0002390,2.60e-31,98;UBERON:0003061,2.60e-31,98;UBERON:0002405,1.69e-29,93;UBERON:0001474,1.29e-27,82;UBERON:0002371,2.67e-27,76;UBERON:0004765,3.20e-24,90;UBERON:0001434,8.61e-22,100;UBERON:0003081,3.50e-17,203;UBERON:0002204,6.57e-09,167 | |||
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| |||
|short_description=p2@LIMD1 | |||
}} |
Revision as of 18:33, 21 January 2014
Short description: | p2@LIMD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LIMD1_5end |
Coexpression cluster: | NA |
Association with transcript: | -104bp_to_ENST00000440097_5end |
EntrezGene: | LIMD1 |
HGNC: | 6612 |
UniProt: | C9JRJ5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 6.55e-30 | 168 |
hematopoietic cell | 1.45e-29 | 177 |
granulocyte monocyte progenitor cell | 8.32e-29 | 67 |
hematopoietic oligopotent progenitor cell | 8.99e-29 | 161 |
hematopoietic multipotent progenitor cell | 8.99e-29 | 161 |
nongranular leukocyte | 1.81e-27 | 115 |
macrophage dendritic cell progenitor | 1.77e-26 | 61 |
monopoietic cell | 2.97e-26 | 59 |
monocyte | 2.97e-26 | 59 |
monoblast | 2.97e-26 | 59 |
promonocyte | 2.97e-26 | 59 |
hematopoietic lineage restricted progenitor cell | 3.90e-26 | 120 |
myeloid cell | 7.74e-26 | 108 |
common myeloid progenitor | 7.74e-26 | 108 |
myeloid lineage restricted progenitor cell | 8.70e-26 | 66 |
leukocyte | 4.85e-25 | 136 |
defensive cell | 1.54e-23 | 48 |
phagocyte | 1.54e-23 | 48 |
myeloid leukocyte | 2.97e-22 | 72 |
classical monocyte | 7.62e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.62e-22 | 42 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.18e-31 | 108 |
hematopoietic system | 2.60e-31 | 98 |
blood island | 2.60e-31 | 98 |
immune system | 1.69e-29 | 93 |
bone element | 1.29e-27 | 82 |
bone marrow | 2.67e-27 | 76 |
skeletal element | 3.20e-24 | 90 |
skeletal system | 8.61e-22 | 100 |
lateral plate mesoderm | 3.50e-17 | 203 |
musculoskeletal system | 6.57e-09 | 167 |
Ontology term | p-value | n |
---|---|---|
leukemia | 4.45e-07 | 39 |