FFCP PHASE1:Hg19::chr5:77655955..77655973,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9522 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=10563 | |||
|TSSclassifier=strong | |||
|UniProt=O15126 | |||
|association_with_transcript=-365bp_to_ENST00000538629,NM_004866,uc003kfl.2,uc010jaa.2,uc011ctc.1,uc011ctd.1_5end | |||
|coexpression_cluster_id=C53 | |||
|description=CAGE_peak_9_at_SCAMP1_5end | |||
|id=chr5:77655955..77655973,+ | |||
|ontology_enrichment_celltype=CL:0000066!8.20e-08!254 | |||
|ontology_enrichment_celltype_v019=CL:0000243;8.39e-09;15!CL:0000125;8.39e-09;15!CL:0000095;5.63e-08;17!CL:0000082;6.36e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,8.23e-09,15;CL:0000125,8.23e-09,15;CL:0000030,8.23e-09,15;CL:0000339,8.23e-09,15;CL:0000095,5.54e-08,17;CL:0000123,5.54e-08,17;CL:0000082,6.15e-08,19 | |||
|ontology_enrichment_development_v019=UBERON:0006238;4.66e-13;10!UBERON:0003056;2.74e-12;3!CL:0000339;8.39e-09;15 | |||
|ontology_enrichment_disease=DOID:305!4.16e-13!106;DOID:14566!1.31e-12!239;DOID:0050687!1.34e-12!143;DOID:162!4.40e-12!235 | |||
|ontology_enrichment_disease_v019=DOID:3905;1.31e-15;9!DOID:4556;2.74e-12;3!DOID:3093;4.67e-12;11!DOID:1324;8.85e-10;15!DOID:5409;1.50e-09;4!DOID:0050615;3.14e-09;16!DOID:3908;6.78e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3905,1.22e-15,9;DOID:4556,2.31e-12,3;DOID:3093,4.54e-12,11;DOID:1324,8.46e-10,15;DOID:5409,1.57e-09,4;DOID:0050615,3.01e-09,16;DOID:3908,6.13e-08,5 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004802;6.36e-08;19!UBERON:0000115;6.36e-08;19!UBERON:0000966;6.78e-08;5!UBERON:0005388;6.78e-08;5!UBERON:0001802;6.78e-08;5!UBERON:0002048;5.74e-07;22!UBERON:0004807;5.74e-07;22!UBERON:0000117;5.74e-07;22!UBERON:0000171;5.74e-07;22!UBERON:0000170;5.74e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004802,6.15e-08,19;UBERON:0000115,6.15e-08,19;UBERON:0002048,5.57e-07,22;UBERON:0000117,5.57e-07,22;UBERON:0000171,5.57e-07,22;UBERON:0000170,5.57e-07,22;UBERON:0005597,5.57e-07,22;UBERON:0000118,5.57e-07,22;UBERON:0000966,8.48e-07,6;UBERON:0005388,8.48e-07,6;UBERON:0001802,8.48e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0,0,0.30120591877825,0,0,0.142169232487422,0,0,0.200544447470142,0.217010870715852,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0.236482229888585,0,0.645484683583826,0,0.188242339542605,0.272906150057846,0.674170453335254,0,0,0,0,0,0,0.290209238628584,2.26954089876456,0,0,0,0,0,1.10483290796269,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0.574752439954483,0.661044872784862,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.665188192387692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.264818361626438,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0.140450806702248,0,0.245668634623536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0,0.121973706129595,0.132529768321485,0.116193942869518,0,0.252320850875628,0.36497735907583,0,0.643240938192885,0,0,0,0.236613600079688,0.337169380156203,0.482022059766964,0.110293972732394,0.435758888184812,0,0.269662616320329,0.392442930250692,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,0,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0.246217006087397,0,0,0,0.671928512795438,0.283550194484773,0.447792613514241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0.356857977594324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355123450626254,0.0821271560138091,0,0,0,0.601519410909855,0.184161977871793,0,0,0,0,0,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0.0915694648183434,0.165018999841176,0,0.650060246036521,0,0,0,0,0,0.107420244868274,0,0,0,0,0.384380134730212,0.255225424989168,0.4046311234222,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0,0.274537029736055,0.117812402345686,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0.245040215981032,0.185803175125719,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0.111443384277478,0.284136146806413,0,0,0,0,0,0,0,0,0,0,0.503865495708552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0.173624994933292,0,0,0,0,0.295547618953547,0,0.435753854075961,0.41827123283581,0,0.341826167541004,0,0,0.434589487688032,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0,0,0.296521128680622,0.123563938946503,0.208843899010911,0,0,0,0,0,0,0,0,0,0,0.450970258243478,0.207376382794494,0,0.330991955875499,0.313932918407225,0,0.569219092059585,0,0.173559738335131,0.195984794828755,0.0870592065804026,0.17472666824203,0.171986032471617,0.19351266257817,0.730893170861856,0.574808199372465,0,0.264768380074501,0.225980740780532,0,0.596143835108969,0,0,0.0801588202515337,0,0.19980960958213,0,0.343609788497747,0,0,0.124252535565433,0.235694034616795,0.135904206073614,0.523014231561666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164831716762333,0.0674035438541849,0,0,0,0,0.160753148465019,0.275078873194468,0,0,0,0,0,0,0,0,0,1.91915197319445,0,0,0,0,0,0,0,0.082092520749339,0,0.226624183040251,0,0,0.129282956361551,0,0.171086837884329,0,0,0,0,0.496166021811951,0,0.121792598380896,0,0,0,0,0,0.157054096250234,0,0,0,0,0.110929051536852,0,7.60917492149269,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0.889811221596536,0.228840068396924,0,0,0,0,0.449803112163605,0.310525913752519,0,0,0,0,0.380805212168795,0,0,0.214821114084977,0,0,0,0,0,0,0.192619830407303,0.428883182749851,0.521988583930423,0,0,0.489473409012935,0.358177682162975,0,0,0.530067437837643,0.771656153083659,0.168942440653073,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0.123935764259002,0,0.318004350653419,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0.471878893390961,0.550285795565037,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0.496211178389294,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0.118193840883968,0,0,0,0,0,0.215927591218621,0,0.0714765441766563,1.73814972905999,0.116241425368125,0,0,0,0,0,0,0.354996002191696,0.511280428554946,0,0,0.93061915699296,0,0.111855431797792,0.098150233615243,0,0,0,0,0,0.467878926924211,0,0,0,1.53916723443601,0.150962843566674,0,0.218559560503957,0,0,0.235676547101626,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0.252332849670158,0,0.506794004045748,0.305966489225945,0,0.459474497674225,0,0.151557396436479,0,0,0,0,0,0.0645889098360061,0,0.448527450322454,0,0,0,0,0.0673520530145875,0,0,0.0814032686109745,0.320182037633146,0,0,0,0,0,0,0,0.320568492303233 | |||
|short_description=p9@SCAMP1 | |||
}} |
Revision as of 06:05, 22 January 2014
Short description: | p9@SCAMP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SCAMP1_5end |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | -365bp_to_ENST00000538629, NM_004866, uc003kfl.2, uc010jaa.2, uc011ctc.1, uc011ctd.1_5end |
EntrezGene: | SCAMP1 |
HGNC: | 10563 |
UniProt: | O15126 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 8.23e-09 | 15 |
glial cell | 8.23e-09 | 15 |
glioblast | 8.23e-09 | 15 |
glioblast (sensu Vertebrata) | 8.23e-09 | 15 |
neuron associated cell | 5.54e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 5.54e-08 | 17 |
epithelial cell of lung | 6.15e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
respiratory tract epithelium | 6.15e-08 | 19 |
lung epithelium | 6.15e-08 | 19 |
lung | 5.57e-07 | 22 |
respiratory tube | 5.57e-07 | 22 |
respiration organ | 5.57e-07 | 22 |
pair of lungs | 5.57e-07 | 22 |
lung primordium | 5.57e-07 | 22 |
lung bud | 5.57e-07 | 22 |
retina | 8.48e-07 | 6 |
photoreceptor array | 8.48e-07 | 6 |
posterior segment of eyeball | 8.48e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
lung carcinoma | 1.22e-15 | 9 |
lung large cell carcinoma | 2.31e-12 | 3 |
nervous system cancer | 4.54e-12 | 11 |
lung cancer | 8.46e-10 | 15 |
lung small cell carcinoma | 1.57e-09 | 4 |
respiratory system cancer | 3.01e-09 | 16 |
non-small cell lung carcinoma | 6.13e-08 | 5 |