FFCP PHASE1:Hg19::chr6:43140095..43140145,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6722 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11291 | |||
|TSSclassifier=strong | |||
|UniProt=F5H6V4 | |||
|association_with_transcript=0bp_to_ENST00000457278,uc011dvf.1_5end | |||
|description=CAGE_peak_5_at_SRF_5end | |||
|id=chr6:43140095..43140145,+ | |||
|ontology_enrichment_celltype=CL:0002321!1.18e-17!248;CL:0000220!1.53e-17!246;CL:0000055!2.92e-17!180;CL:0000183!1.35e-15!59;CL:0000393!1.15e-14!60;CL:0000211!1.15e-14!60;CL:0000187!1.42e-14!54;CL:0000680!9.65e-14!57;CL:0000056!9.65e-14!57;CL:0000355!9.65e-14!57;CL:0000192!1.79e-11!42;CL:0000514!1.79e-11!42;CL:0000222!1.65e-10!119;CL:0000359!1.12e-08!32;CL:0000133!6.22e-08!59;CL:0000221!4.56e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000359;5.07e-10;32!CL:0000192;2.45e-09;43!CL:0000187;1.26e-08;55!CL:0000393;5.46e-07;61!CL:0000211;5.46e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,2.28e-15,55;CL:0000393,2.71e-15,61;CL:0000211,2.71e-15,61;CL:0000680,4.79e-14,58;CL:0000056,4.79e-14,58;CL:0000355,4.79e-14,58;CL:0000192,5.01e-14,43;CL:0000514,5.01e-14,43;CL:0000359,1.54e-10,32;CL:0002321,6.61e-10,250;CL:0000222,1.30e-09,121 | |||
|ontology_enrichment_development_v019=CL:0000514;2.45e-09;43!CL:0000355;6.04e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002385!1.96e-11!63;UBERON:0001015!1.96e-11!63;UBERON:0000383!1.96e-11!63;UBERON:0001134!2.93e-11!61;UBERON:0002036!2.93e-11!61;UBERON:0003082!2.93e-11!61;UBERON:0005256!6.96e-11!143;UBERON:0004290!1.24e-10!70;UBERON:0000486!1.06e-09!82;UBERON:0000914!2.43e-09!83;UBERON:0002329!2.43e-09!83;UBERON:0003077!2.43e-09!83;UBERON:0003059!2.43e-09!83;UBERON:0007282!2.43e-09!83;UBERON:0009618!2.43e-09!83;UBERON:0007285!2.43e-09!83;UBERON:0001009!5.36e-08!113;UBERON:0004535!6.11e-08!110;UBERON:0000490!1.32e-07!138;UBERON:0002049!1.64e-07!79;UBERON:0007798!1.64e-07!79;UBERON:0003914!3.71e-07!118 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,2.46e-16,160;UBERON:0009142,2.46e-16,160;UBERON:0007503,2.15e-14,78;UBERON:0005256,4.32e-14,122;UBERON:0007524,3.72e-13,73;UBERON:0002329,9.11e-13,71;UBERON:0003059,9.11e-13,71;UBERON:0007282,9.11e-13,71;UBERON:0004290,9.11e-13,71;UBERON:0009618,9.11e-13,71;UBERON:0002385,1.20e-12,64;UBERON:0001015,1.20e-12,64;UBERON:0000383,1.20e-12,64;UBERON:0001134,1.69e-12,62;UBERON:0002036,1.69e-12,62;UBERON:0003082,1.69e-12,62;UBERON:0003077,1.93e-12,72;UBERON:0007285,1.93e-12,72;UBERON:0000486,4.21e-10,83;UBERON:0000490,3.61e-08,148 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.422863212287913,0,0.446961094427288,0,0,0,0,0.491467873003018,2.79120467188971,0.218441372130172,0,0,0,4.03395087871065,2.41077811209591,3.65155045193687,2.92759679274304,3.0780264519197,2.24400760368678,7.52291331547411,1.14494394852423,1.77936752594749,2.88748071068046,0.152826811495903,0.246301768349837,0.472264687882075,1.18009283054671,0.383829398097213,0,0,0,0,0,0.142169232487422,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0.309706370895104,0.28769239232215,0.256160706529101,0.47296445977717,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0.426224750532694,0,0,0,0,0,0.217188844705117,0.605399502633369,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0.400395987036012,0,0.661044872784862,0,0,0,0,0,0,0,0.393419540227666,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24930726552346,0,0,0.201606743224732,0.267440195783507,0.289648807765598,2.43806866313962,1.34140171940727,1.66221330396589,0,1.50401373190767,1.15877215168659,0.795285947051099,0,3.21418378357831,5.76496433402666,4.56740885604255,0.458426764241994,1.45718115317017,0.370784442784429,0,0.522389211897802,0,0,0,0,0.198762407366705,0.860234595106124,0.347140501607594,0,0.838998872419812,0.275118041940067,0,0.516833518338658,0,0.33472061276467,0,0,1.22031028774085,0.367663080345869,3.24056779152704,0.17859945656816,0.44905874525234,0,0,0.949265659568129,0.549605231791222,0,3.87780264148325,0.872188104285069,0.496971951695318,0.506522046658319,0.662045904066094,0,0,3.36406560085384,0,2.4666754841716,1.8672662123986,0.404132016209064,0.326923806226917,0.302714855289863,0.576175924479999,0.468642863667593,0.312160076830321,0,0.149448680551801,0.117434498643765,0,0,0,0.245668634623536,0.103325781175765,0,1.23633464639278,0.910161361938026,2.15585442544872,0,0.125118519871964,0,1.75591048352335,1.5324389789951,0.901428353439581,0.794025282120147,0.89694817844431,1.70845911054854,0.847727604638247,1.50045548042201,1.03052529238439,0.772921620136887,2.04728541964749,0.843881661206331,0.779496041289589,1.51460264546469,1.28869858099219,0.484938170456436,3.19508633264953,2.41805035746337,2.7129694769678,0.386521706326594,0.818238361772504,0.860413786167011,0.243947412259191,0.530119073285941,0.348581828608555,0.621966330092223,0.504641701751257,0.36497735907583,3.12899064659632,3.85944562915731,2.76269842704961,0,0,0.118306800039844,0.168584690078102,0.241011029883482,0.220587945464788,0.871517776369625,0,0.674156540800822,0.196221465125346,1.53898862778556,0,4.20725321410337,1.6462960453256,5.88034845542168,0,0.982827216677626,0.590789906681404,0,0.245976877086227,1.02940686179115,0.98775256867763,0,0.201057944823262,0.277765335475589,1.3032332212413,0,0,1.507095264676,6.80970426567766,0.577465791044295,0,0.190254152234598,0,0,0,0,0,0,0.16798212819886,0.567100388969546,0.268675568108545,0,0.766765358330422,0.492663237895943,0.088048434013226,0,0,0,0.063497894292169,0,0,3.4214489204541,0,0,0.571652865261156,0.784917590417525,0,0.22001485746285,1.68053230485111,0,0,4.5209479819428,2.08014873822732,0.771622122786426,1.41849132023278,0.266422179016099,0.142977993658148,0,1.64648067356154,0,0.355391948742546,1.58390374586686,0.602878754119172,0.871533458600294,2.0994328148232,0,0,0,2.15662369942424,1.14861935834114,1.42636905040718,0.144781306667579,0.205476322550383,0.179060963239896,0,0.197030760201927,0,0.256686072559497,0.254094624222463,1.30139853857622,3.09315525111078,0.167516265334349,2.55175500661265,1.49801404789436,0,0.414415513436035,0.736148950314839,1.00034104211935,1.62759014219841,1.87173775377726,2.3195768543631,0.788512075169673,1.40569697991256,0.300946099727719,0,1.03473071292505,2.65690239414175,2.02806085395873,0.60818530127658,0.391602314925481,1.71571711905428,0,0,0.106727557803444,0,0,0.30239029332968,0,0.767309866440312,0.841980283299221,0,0.511707249066704,0.804269605718038,1.48418066444991,0.308419387605311,0.887808626565635,0.492762936082855,0,0.581051892299796,0.241718899183244,2.00506470303285,0.368323955743585,0.918515585316854,1.0925470080403,1.96686622439136,0,0,4.70609861506113,1.46139224653261,0.316654886678627,0,0.170093705276516,0.431831832204279,1.54227252690289,2.43851793789468,1.50506932156456,0,0.831076008928724,0.895499018888713,0,0,0,1.64007322849853,0,0,0.457847324091717,0.082509499920588,0,1.95018073810956,0,0.870036464629098,1.3864375540318,0.921022048356777,0.275673144969061,0.537101224341368,0.580066775656914,0.426133137080504,2.8490251406956,0.495854746082934,0.576570202095319,0.510450849978337,0.6069466851333,0.464845549297286,0.31481234683064,2.0911118104818,0.308033580176089,3.19383618190213,0.869932992075073,2.22389062924704,0.429374660225974,1.48863347743867,3.48017367190598,1.14378116354295,1.79128453917934,0,0,0.78494864019923,1.61885211824983,0.54907405947211,1.41374882814824,1.2130948894399,0,1.68503382495592,2.92580243453754,0.243713489631284,1.05650146756755,0.682499557039929,2.40389234321312,0,1.10273068709225,1.99031692572366,1.315352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| |||
|short_description=p5@SRF | |||
}} |
Revision as of 11:59, 22 January 2014
Short description: | p5@SRF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SRF_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000457278, uc011dvf.1_5end |
EntrezGene: | SRF |
HGNC: | 11291 |
UniProt: | F5H6V4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 2.28e-15 | 55 |
electrically responsive cell | 2.71e-15 | 61 |
electrically active cell | 2.71e-15 | 61 |
muscle precursor cell | 4.79e-14 | 58 |
myoblast | 4.79e-14 | 58 |
multi-potent skeletal muscle stem cell | 4.79e-14 | 58 |
smooth muscle cell | 5.01e-14 | 43 |
smooth muscle myoblast | 5.01e-14 | 43 |
vascular associated smooth muscle cell | 1.54e-10 | 32 |
embryonic cell | 6.61e-10 | 250 |
mesodermal cell | 1.30e-09 | 121 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 2.46e-16 | 160 |
entire embryonic mesenchyme | 2.46e-16 | 160 |
epithelial vesicle | 2.15e-14 | 78 |
trunk mesenchyme | 4.32e-14 | 122 |
dense mesenchyme tissue | 3.72e-13 | 73 |
somite | 9.11e-13 | 71 |
presomitic mesoderm | 9.11e-13 | 71 |
presumptive segmental plate | 9.11e-13 | 71 |
dermomyotome | 9.11e-13 | 71 |
trunk paraxial mesoderm | 9.11e-13 | 71 |
muscle tissue | 1.20e-12 | 64 |
musculature | 1.20e-12 | 64 |
musculature of body | 1.20e-12 | 64 |
skeletal muscle tissue | 1.69e-12 | 62 |
striated muscle tissue | 1.69e-12 | 62 |
myotome | 1.69e-12 | 62 |
paraxial mesoderm | 1.93e-12 | 72 |
presumptive paraxial mesoderm | 1.93e-12 | 72 |
multilaminar epithelium | 4.21e-10 | 83 |
unilaminar epithelium | 3.61e-08 | 148 |