FFCP PHASE1:Hg19::chr6:152489484..152489497,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23345 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17089 | |||
|TSSclassifier=strong | |||
|UniProt=F8WAI0 | |||
|association_with_transcript=0bp_to_ENST00000354674_5end | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_42_at_SYNE1_5end | |||
|id=chr6:152489484..152489497,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0004140;3.58e-26;1!UBERON:0010227;5.93e-26;1!UBERON:0003056;1.01e-09;3 | |||
|ontology_enrichment_disease=DOID:114!7.84e-19!2;DOID:178!3.29e-10!1;DOID:326!3.29e-10!1;DOID:3978!3.29e-10!1;DOID:3394!3.29e-10!1;DOID:5844!3.29e-10!1;DOID:1287!6.84e-10!4 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!2.17e-19!2;UBERON:0002757!2.17e-19!2;UBERON:0010134!2.17e-19!2;UBERON:0002784!2.17e-19!2;UBERON:0005408!2.17e-19!2;UBERON:0001899!2.17e-19!2;UBERON:0001723!3.16e-13!3;UBERON:0001033!3.16e-13!3;UBERON:0010056!3.16e-13!3;UBERON:0007100!1.05e-11!27;UBERON:0007023!3.97e-11!115;UBERON:0002079!9.84e-11!1;UBERON:0007029!1.43e-10!1;UBERON:0002146!2.08e-10!1;UBERON:0005623!2.08e-10!1;UBERON:0003296!3.62e-10!4;UBERON:0010133!3.62e-10!4;UBERON:0006834!3.96e-10!1;UBERON:0003103!2.21e-09!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0002079;5.93e-26;1!UBERON:0001905;1.07e-13;2!UBERON:0002757;1.07e-13;2!UBERON:0010134;1.07e-13;2!UBERON:0002081;1.07e-13;2!UBERON:0005408;1.07e-13;2!UBERON:0001899;1.07e-13;2!UBERON:0000020;1.96e-10;23!UBERON:0001032;5.00e-10;24!UBERON:0004456;5.00e-10;24!UBERON:0004151;1.41e-09;3!UBERON:0001723;1.74e-09;3!UBERON:0001033;1.74e-09;3!UBERON:0003296;1.69e-07;4!UBERON:0010133;1.69e-07;4!UBERON:0002784;1.69e-07;4!UBERON:0001134;4.08e-07;16!UBERON:0002036;4.08e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002079,5.93e-26,1;UBERON:0002081,1.07e-13,2;UBERON:0010227,1.07e-13,2;UBERON:0001905,1.21e-13,2;UBERON:0002757,1.21e-13,2;UBERON:0010134,1.21e-13,2;UBERON:0005408,1.21e-13,2;UBERON:0001899,1.21e-13,2;UBERON:0000020,5.07e-10,24;UBERON:0001032,5.07e-10,24;UBERON:0004456,5.07e-10,24;UBERON:0004151,1.41e-09,3;UBERON:0001723,1.81e-09,3;UBERON:0001033,1.81e-09,3;UBERON:0010056,1.81e-09,3;UBERON:0003296,1.80e-07,4;UBERON:0010133,1.80e-07,4;UBERON:0002784,1.80e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267096106940212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,4.06765333404958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458320848023367,0,0.199679000498991,0.429226048136571,0.223171457441873,3.42635709682304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1440859791201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535701835878287,2.01770233331294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.21778772489591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12929087541872,2.3196288626764,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714193294391221,0,0,0,0,0,0.653150243690884,1.02669990325584,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p42@SYNE1 | |||
}} |
Revision as of 14:39, 22 January 2014
Short description: | p42@SYNE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_42_at_SYNE1_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 0bp_to_ENST00000354674_5end |
EntrezGene: | SYNE1 |
HGNC: | 17089 |
UniProt: | F8WAI0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
left cardiac atrium | 5.93e-26 | 1 |
cardiac atrium | 1.07e-13 | 2 |
future cardiac atrium | 1.07e-13 | 2 |
pineal body | 1.21e-13 | 2 |
regional part of epithalamus | 1.21e-13 | 2 |
secretory circumventricular organ | 1.21e-13 | 2 |
circumventricular organ | 1.21e-13 | 2 |
epithalamus | 1.21e-13 | 2 |
sense organ | 5.07e-10 | 24 |
sensory system | 5.07e-10 | 24 |
entire sense organ system | 5.07e-10 | 24 |
cardiac chamber | 1.41e-09 | 3 |
tongue | 1.81e-09 | 3 |
gustatory system | 1.81e-09 | 3 |
future tongue | 1.81e-09 | 3 |
gland of diencephalon | 1.80e-07 | 4 |
neuroendocrine gland | 1.80e-07 | 4 |
regional part of diencephalon | 1.80e-07 | 4 |