FFCP PHASE1:Hg19::chr6:160113757..160113772,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6648 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11180 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-75bp_to_ENST00000540491_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_13_at_SOD2_5end | |||
|id=chr6:160113757..160113772,- | |||
|ontology_enrichment_celltype=CL:0002057!1.21e-23!42;CL:0000860!1.38e-21!45;CL:0002194!6.34e-19!63;CL:0000576!6.34e-19!63;CL:0000040!6.34e-19!63;CL:0000559!6.34e-19!63;CL:0000766!2.33e-18!76;CL:0002009!1.08e-17!65;CL:0000839!6.81e-16!70;CL:0000557!1.77e-14!71;CL:0000763!2.00e-10!112;CL:0000049!2.00e-10!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.96e-59;33!CL:0002057;1.96e-59;33!CL:0000473;9.37e-50;39!CL:0000234;9.37e-50;39!CL:0000576;2.69e-31;48!CL:0000766;6.09e-23;69!CL:0000763;9.81e-12;100!CL:0000775;4.46e-09;3!CL:0000094;3.27e-08;8!CL:0000738;5.10e-07;136!CL:0002087;5.29e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,4.77e-59,48;CL:0000234,4.77e-59,48;CL:0000860,4.82e-57,42;CL:0002057,4.82e-57,42;CL:0000766,4.98e-48,72;CL:0002194,3.40e-45,59;CL:0000576,3.40e-45,59;CL:0000040,3.40e-45,59;CL:0000559,3.40e-45,59;CL:0002009,2.07e-43,61;CL:0000839,2.05e-39,66;CL:0000557,1.09e-38,67;CL:0000763,4.67e-30,108;CL:0000049,4.67e-30,108;CL:0000738,2.10e-20,136;CL:0002087,1.24e-18,115;CL:0002031,1.79e-17,120;CL:0002032,1.29e-16,161;CL:0000837,1.29e-16,161;CL:0000037,1.74e-15,168;CL:0000988,3.61e-14,177;CL:0000775,4.29e-09,3;CL:0000094,3.38e-08,8 | |||
|ontology_enrichment_development_v019=CL:0002057;2.73e-42;42!CL:0000049;2.75e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.25e-14!112;UBERON:0002390!2.04e-14!102;UBERON:0003061!2.04e-14!102;UBERON:0002371!2.00e-13!80;UBERON:0002405!5.92e-13!115;UBERON:0001474!2.67e-12!86;UBERON:0004765!2.60e-11!101;UBERON:0001434!2.60e-11!101;UBERON:0002204!5.47e-10!167;UBERON:0007023!2.53e-09!115;UBERON:0003081!2.91e-07!216;UBERON:0000926!6.56e-07!448;UBERON:0004120!6.56e-07!448;UBERON:0006603!6.56e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.70e-07;15!UBERON:0000179;4.70e-07;15!UBERON:0000463;4.70e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.25e-37,108;UBERON:0002390,9.79e-36,98;UBERON:0003061,9.79e-36,98;UBERON:0002371,5.40e-33,76;UBERON:0002405,8.02e-31,93;UBERON:0001474,6.85e-30,82;UBERON:0004765,2.13e-26,90;UBERON:0001434,5.06e-26,100;UBERON:0003081,3.53e-19,203;UBERON:0002204,8.50e-19,167;UBERON:0000926,3.01e-11,315;UBERON:0004120,3.01e-11,315;UBERON:0006603,3.01e-11,315;UBERON:0000178,4.66e-07,15;UBERON:0000179,4.66e-07,15;UBERON:0000463,4.66e-07,15 | |||
|phase1_expression=0,0.214100523890983,0.281908808191942,0,0,0.872338524100369,0,0.631719873426831,0.261185628199839,0,0,0,0.263766978228454,0,0.662794751455832,4.03395087871065,0.602694528023977,0,0.487932798790507,0.123121058076788,0,0,0,0,0.125542639594803,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,2.80762226458198,2.60413044859022,0.447830948479849,0,0,1.01778767145695,0.755751887377619,1.69808842831471,13.248455103624,13.5685403047203,7.43295290148249,18.9876978932619,13.0641960329841,8.51336027598907,21.0294865249337,21.9464792418501,14.8969135253776,4.89430082810772,6.27684145133045,3.82029923556644,28.159718098123,8.02322567690234,15.344091019177,10.5552416059749,7.57961898962201,10.2293940127847,32.79364396503,31.2061873580127,31.1411124497787,13.3161792586074,9.38669253156363,4.99534342821768,31.4807741369352,16.940771255428,19.304205633894,0.422510572623884,0,0.419317291016752,0.112328631146495,0.450530678524519,0,0.285012743741249,0.39783335439818,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0.764546456250458,0,0,0.263384084775077,0,0.393010762749165,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34362744548263,0.253019692019503,0,0,0,0,0,0,0,0,0.201606743224732,0,0,2.43806866313962,0,0,0,0,0.724232594804119,0,0.486634870302636,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0.26591592103773,0.238490624305342,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0.488124115096339,0.367663080345869,0,0.0892997282840798,0,0.112611480483322,0,0,0,1.31780417436063,3.87780264148325,0,0,0,0.264818361626438,0,0,0,0,0.24666754841716,0,0.404132016209064,0.326923806226917,0,0,0,0.936480230490962,0,0.149448680551801,0,0,0,0,0,0.206651562351531,0,0.741800787835671,0,0,0,0,0,0,0,0.901428353439581,0.226864366320042,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,1.85747171212792,1.44375896333917,0.118306800039844,0.168584690078102,0,0,0.435758888184812,0.237270619111097,0.134831308160164,0,0.769494313892781,0,0,0,0,1.26755034821831,3.9313088667105,1.18157981336281,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,3.17606185074362,6.48179717607255,5.32711626256875,0,0,0.246217006087397,0.702012795417713,1.18904929830983,0,0,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0.285955987316295,0,0,0,0,0,0.301439377059586,0,0.599837947092342,0,3.01354254859276,6.32501818449095,0,0,0,0.144781306667579,0.410952645100767,0.895304816199478,0,0.197030760201927,0,0,0,0,0,0.167516265334349,0,5.24304916763028,8.97484377612075,7.87389475528467,0.24538298343828,0.500170521059677,0,0.207970861530807,0.356857977594324,0.157702415033935,0.117141414992713,0.300946099727719,0,1.03473071292505,0,0,0.0868836144680828,0,0,0,0.647142602455851,0.640365346820666,0,0,0,0,0.153461973288062,0.280660094433074,0,0,0,0,0,0,0.0821271560138091,0,0.116210378459959,0.120859449591622,0,0,0,0.182091168006717,0.524497659837696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.522870902049801,0,0,0,0.206082023295445,0.0915694648183434,0,0,0,0,0.096670718292122,0.308097234229289,0,0.137836572484531,0.214840489736547,0,0,0,0,0.192190067365106,0.127612712494584,0.2023155617111,0,0,0,0,0,0,0,0.286249773483982,0,0,0,0,0.42793898803392,0,1.56989728039846,0,0.54907405947211,0.117812402345686,0.202182481573316,0,0.842516912477962,0,2.68084838594413,0,0.136499911407986,0.141405431953713,0,0.551365343546124,0,0.876901770507525,0,0,0.202910376962704,0.92947049429925,0,0,0,0,0,2.11107635297664,1.97576935775941,0,0,0,0,0,0.376575203107117,0,0,0.443430153536676,0.229723400206959,1.01489521846434,1.52927441428475,1.70894156152249,0.714695326373367,1.23408681925858,0,1.62009431171434,3.96562588147135,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0.280797178113459,0,0.156679895773023,0,0,0.321176150207399,0,0,1.03051603426729,0,0,0,0.19538809540204,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0.296964680832639,0,0.994147647766298,0.281338832821026,0.111308705022906,0.16480387422676,0,0,0,0,0.102268682502155,0,0,0,0.179021174675609,0,0.591860433821602,2.3948309234694,0,0,0.278304294485554,0,0.520855522170466,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0.110579259931225,0,0.219385397153973,0,0,0.153900517007594,0.797594390929008,0.23056390438806,0,0.108647371922008,0.31900115973192,0,0.533034776018635,0,0.156980256395025,0,0.225595660617181,0,0,0.189753732724185,0.158936578980379,0.210998064528027,0.163232808159148,0.141353071433941,0,1.99052386215701,0.0884575645033392,0,0,0,0,0.134802265961354,0,0.702793337176017,0,0,0,0,0,0.30607276163049,0.505492637027904,0.150323419414493,0,0,0.330991955875499,0,0,0,0,0,0,0.0870592065804026,0.34945333648406,0,0.0967563312890851,0,0,0.193978032976839,0,0.225980740780532,0,0.19871461170299,0.189932387867636,0,0.0801588202515337,0,0,0,0,0,0.288109595976299,0,0.235694034616795,0,0.104602846312333,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0,1.43574604915363,0.199679000498991,0.429226048136571,2.23171457441873,0.134366944973453,0.360299883542404,0,0.07878318230722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| |||
|short_description=p13@SOD2 | |||
}} |
Revision as of 14:57, 22 January 2014
Short description: | p13@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_SOD2_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -75bp_to_ENST00000540491_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 4.77e-59 | 48 |
phagocyte | 4.77e-59 | 48 |
classical monocyte | 4.82e-57 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.82e-57 | 42 |
myeloid leukocyte | 4.98e-48 | 72 |
monopoietic cell | 3.40e-45 | 59 |
monocyte | 3.40e-45 | 59 |
monoblast | 3.40e-45 | 59 |
promonocyte | 3.40e-45 | 59 |
macrophage dendritic cell progenitor | 2.07e-43 | 61 |
myeloid lineage restricted progenitor cell | 2.05e-39 | 66 |
granulocyte monocyte progenitor cell | 1.09e-38 | 67 |
myeloid cell | 4.67e-30 | 108 |
common myeloid progenitor | 4.67e-30 | 108 |
leukocyte | 2.10e-20 | 136 |
nongranular leukocyte | 1.24e-18 | 115 |
hematopoietic lineage restricted progenitor cell | 1.79e-17 | 120 |
hematopoietic oligopotent progenitor cell | 1.29e-16 | 161 |
hematopoietic multipotent progenitor cell | 1.29e-16 | 161 |
hematopoietic stem cell | 1.74e-15 | 168 |
hematopoietic cell | 3.61e-14 | 177 |
neutrophil | 4.29e-09 | 3 |
granulocyte | 3.38e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 3.25e-37 | 108 |
hematopoietic system | 9.79e-36 | 98 |
blood island | 9.79e-36 | 98 |
bone marrow | 5.40e-33 | 76 |
immune system | 8.02e-31 | 93 |
bone element | 6.85e-30 | 82 |
skeletal element | 2.13e-26 | 90 |
skeletal system | 5.06e-26 | 100 |
lateral plate mesoderm | 3.53e-19 | 203 |
musculoskeletal system | 8.50e-19 | 167 |
mesoderm | 3.01e-11 | 315 |
mesoderm-derived structure | 3.01e-11 | 315 |
presumptive mesoderm | 3.01e-11 | 315 |
blood | 4.66e-07 | 15 |
haemolymphatic fluid | 4.66e-07 | 15 |
organism substance | 4.66e-07 | 15 |