FFCP PHASE1:Hg19::chr6:167536537..167536608,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1235 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1607 | |||
|TSSclassifier=weak | |||
|UniProt=P51684 | |||
|association_with_transcript=280bp_to_ENST00000341935_5end | |||
|coexpression_cluster_id=C47 | |||
|description=CAGE_peak_4_at_CCR6_5end | |||
|id=chr6:167536537..167536608,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.16e-34!140;CL:0002087!2.55e-31!119;CL:0000037!8.80e-28!172;CL:0000566!8.80e-28!172;CL:0002031!4.15e-27!124;CL:0000542!4.30e-27!53;CL:0000051!4.30e-27!53;CL:0000838!2.96e-26!52;CL:0000988!7.55e-25!182;CL:0002032!9.35e-25!165;CL:0000837!9.35e-25!165;CL:0000791!6.33e-16!18;CL:0000789!6.33e-16!18;CL:0002420!6.33e-16!18;CL:0002419!6.33e-16!18;CL:0000790!6.33e-16!18;CL:0000945!2.32e-15!24;CL:0000826!2.32e-15!24;CL:0000236!5.19e-14!14;CL:0000451!8.95e-13!10;CL:0000990!7.71e-11!8;CL:0000084!4.85e-10!25;CL:0000827!4.85e-10!25;CL:0000625!6.43e-09!11;CL:0000840!2.38e-08!5;CL:0001029!2.38e-08!5;CL:0002009!8.82e-08!65;CL:0000624!1.20e-07!6;CL:0000453!7.42e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000236;8.91e-22;13!CL:0000945;1.74e-19;24!CL:0000451;1.45e-14;10!CL:0000542;9.74e-13;53!CL:0000990;2.45e-11;8!CL:0000840;9.01e-10;5!CL:0000791;1.90e-09;18!CL:0000789;1.90e-09;18!CL:0002419;1.90e-09;18!CL:0000453;1.83e-07;5!CL:0000226;8.36e-07;3!CL:0000842;8.36e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.01e-22,52;CL:0000542,1.11e-21,53;CL:0000051,1.11e-21,53;CL:0000236,5.35e-20,14;CL:0000945,1.81e-19,24;CL:0000826,1.81e-19,24;CL:0000738,1.50e-16,136;CL:0000037,8.76e-15,168;CL:0000451,2.29e-14,10;CL:0002087,1.56e-13,115;CL:0000988,1.98e-13,177;CL:0002031,6.71e-12,120;CL:0002032,1.34e-11,161;CL:0000837,1.34e-11,161;CL:0000990,3.02e-11,8;CL:0000840,8.80e-10,5;CL:0001029,8.80e-10,5;CL:0000791,2.12e-09,18;CL:0000789,2.12e-09,18;CL:0002420,2.12e-09,18;CL:0002419,2.12e-09,18;CL:0000790,2.12e-09,18;CL:0000453,2.33e-07,5;CL:0000226,6.52e-07,3;CL:0000842,6.52e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000051;9.74e-13;53!CL:0000790;1.90e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.53e-14!102;UBERON:0003061!4.53e-14!102;UBERON:0002193!2.07e-13!112;UBERON:0000178!2.33e-11!15;UBERON:0000179!2.33e-11!15;UBERON:0000463!2.33e-11!15;UBERON:0007023!2.04e-09!115;UBERON:0002405!1.85e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.75e-18;15!UBERON:0000179;1.75e-18;15!UBERON:0000463;1.75e-18;15!UBERON:0002390;2.96e-12;32!UBERON:0002193;9.31e-09;42!UBERON:0004177;4.81e-07;5!UBERON:0005057;4.81e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.32e-18,15;UBERON:0000179,1.32e-18,15;UBERON:0000463,1.32e-18,15;UBERON:0004177,2.91e-10,7;UBERON:0005057,2.91e-10,7;UBERON:0002193,4.47e-08,108;UBERON:0002370,4.61e-08,4;UBERON:0005058,4.61e-08,4;UBERON:0009113,4.61e-08,4;UBERON:0003295,4.61e-08,4;UBERON:0005562,4.61e-08,4;UBERON:0002390,9.58e-08,98;UBERON:0003061,9.58e-08,98 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.32906122652669,8.04585776609468,7.00525953691745,0.393364276848904,1.53531759238885,0.464448369948228,0,0,0,0,0.284338464974843,0,0,0.802177789880567,0.217010870715852,0.223915474239924,0.647787332037959,0.257575567634187,0.145398238779565,0.755751887377619,0.242584061187816,0,0,0,0,0.512321413058201,0,0,0,0,0.188242339542605,0.818718450173537,0,0.306083892370903,1.60464513538047,0,0,0,0.426224750532694,0.580418477257168,0.56738522469114,1.24564449799115,0,0.521482918420201,0.217188844705117,0.605399502633369,1.10483290796269,0.316462387440884,0,0,0.209658645508376,0,0,0,0,0,0,40.4791362261042,41.506534455922,48.9230089624955,79.3718213973703,61.6609820035459,44.8306903164497,39.6626923670917,43.8864727086267,22.7685187643779,24.6639619535794,38.6095960406481,2.64342657158052,4.48406850385229,0,0.983548850569165,3.53709686474248,3.49522548299166,1.83905144929746,0.651844533267181,0.473447805734733,1.94826728407911,11.2524561454025,12.668054021418,4.65221178625604,7.58250818542044,8.83830106107159,8.19373889627233,0.164437904603676,0.276350017785848,0.289803085735052,0,0,0,7.47841661803937,1.14966148080576,2.40539211837841,3.03623630423403,0.95569624297229,1.30216690771284,0,1.20460095262218,1.15187950038977,1.24930726552346,0.710331756132051,1.64225599384209,0.201606743224732,0.534880391567015,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.458426764241994,0,0,3.57002133020152,3.13433527138681,5.45127638127347,0.238490624305342,2.28797964312051,1.11437250398869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10689594688802,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.25923547175404,1.18218456121156,0.862510299438069,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,3.72182447021197,2.37285620900479,1.49418580924822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,7.61171413848254,3.0585488285695,2.84823593587081,12.6262840992628,10.6954191002411,1.29694662238543,4.32025149790492,7.13812658664843,0,0,0,0.929015875628594,0,0,0,0,0,0,0,6.17753791849609,0,0,0,0,5.29940647842208,10.6953844811255,0,0,0.307240764308458,0,0.166849141711909,0,0,0,0,0,0,0.18714054040822,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.597743964753209,11.0513566212459,0,0,0,0,0,0,1.02314474045374,1.1837208676432,4.7896618469388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384751292518985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.848118428603645,0,0,1.41532103205343,1.22206028986725,0,0,0,0,0,0,0,0,0,0,2.41981432097328,0.30607276163049,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,1.45483524732629,0,0,0,0,0,0,0,1.70762395791482,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0.223171457441873,0,0,0,9.61154824148129,8.98332856354714,10.2453386658361,0.196854963029498,0.0846733320657845,0,0,0,0,0,90.4395044037032,68.0945720010996,0,0,0.472834243795189,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0,0,0,0.747511887973863,0.78602152549833,1.65695622138878,17.3658107634183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16916185303633,1.19578356282027,0.327130788511688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,2.19303106742873,0,0,0,0,0,1.21393120847326,0,0,0.230467975111559,0,0.0679697329768317,0,0,0,0.313972371402056,0,0,0,16.1945693413966,0,0.214429632529969,0,0,0,0,0,0,0,0.860454717640555,0,0,0.423387050190929,0,0,0,0,0,4.51096322434397,0,0,0,0,0,0,0,0,0,0,1.31196068783506,6.33822725461476,0,0,0,0,0,0,0,14.4735233688975,4.83434159801829,0,0,0,0,0,2.2936464170227,0.143339583151451,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,1.27940389140589,0,1.35636710655613,1.05527014302958,0,0.0636471582781649,0,1.08858373948481,0,17.309477624749,0.932388670104793,0,0,0,0,0,0,0.122241444182866,0,0,14.2904393449629,1.28227396921293 | |||
|short_description=p4@CCR6 | |||
}} |
Revision as of 15:12, 22 January 2014
Short description: | p4@CCR6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CCR6_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | 280bp_to_ENST00000341935_5end |
EntrezGene: | CCR6 |
HGNC: | 1607 |
UniProt: | P51684 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.01e-22 | 52 |
lymphocyte | 1.11e-21 | 53 |
common lymphoid progenitor | 1.11e-21 | 53 |
B cell | 5.35e-20 | 14 |
lymphocyte of B lineage | 1.81e-19 | 24 |
pro-B cell | 1.81e-19 | 24 |
leukocyte | 1.50e-16 | 136 |
hematopoietic stem cell | 8.76e-15 | 168 |
dendritic cell | 2.29e-14 | 10 |
nongranular leukocyte | 1.56e-13 | 115 |
hematopoietic cell | 1.98e-13 | 177 |
hematopoietic lineage restricted progenitor cell | 6.71e-12 | 120 |
hematopoietic oligopotent progenitor cell | 1.34e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.34e-11 | 161 |
conventional dendritic cell | 3.02e-11 | 8 |
immature conventional dendritic cell | 8.80e-10 | 5 |
common dendritic progenitor | 8.80e-10 | 5 |
mature alpha-beta T cell | 2.12e-09 | 18 |
alpha-beta T cell | 2.12e-09 | 18 |
immature T cell | 2.12e-09 | 18 |
mature T cell | 2.12e-09 | 18 |
immature alpha-beta T cell | 2.12e-09 | 18 |
Langerhans cell | 2.33e-07 | 5 |
single nucleate cell | 6.52e-07 | 3 |
mononuclear cell | 6.52e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 1.32e-18 | 15 |
haemolymphatic fluid | 1.32e-18 | 15 |
organism substance | 1.32e-18 | 15 |
hemopoietic organ | 2.91e-10 | 7 |
immune organ | 2.91e-10 | 7 |
hemolymphoid system | 4.47e-08 | 108 |
thymus | 4.61e-08 | 4 |
hemolymphoid system gland | 4.61e-08 | 4 |
thymic region | 4.61e-08 | 4 |
pharyngeal gland | 4.61e-08 | 4 |
thymus primordium | 4.61e-08 | 4 |
hematopoietic system | 9.58e-08 | 98 |
blood island | 9.58e-08 | 98 |