Personal tools

FFCP PHASE1:Hg19::chrX:123480214..123480227,+: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{FFCP|DPIdataset=robustDPI|EntrezGene=4068|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10820|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_uc010nqx.2_5end|coexpression_cluster_id=C386|description=CAGE_peak_6_at_SH2D1A_5end|id=chrX:123480214..123480227,+|ontology_enrichment_celltype=CL:0000084!2.12e-18!25;CL:0000827!2.12e-18!25;CL:0000838!3.70e-18!52;CL:0000542!9.40e-18!53;CL:0000051!9.40e-18!53;CL:0000080!8.38e-14!6;CL:0000988!1.86e-11!182;CL:0000037!5.98e-09!172;CL:0000566!5.98e-09!172;CL:0002087!3.93e-08!119;CL:0000738!2.27e-07!140;CL:0000623!2.42e-07!3;CL:0000825!2.42e-07!3|ontology_enrichment_celltype_v019=CL:0002127;1.84e-14;1!CL:0000911;1.84e-14;1!CL:0000814;1.84e-14;1!CL:0000084;2.15e-13;25|ontology_enrichment_celltype_v019_2=CL:0002127,2.11e-14,1;CL:0000914,2.11e-14,1;CL:0000911,2.11e-14,1;CL:0000814,2.11e-14,1;CL:0002042,2.11e-14,1;CL:0002039,2.11e-14,1;CL:0002040,2.11e-14,1;CL:0002041,2.11e-14,1;CL:0000084,1.96e-13,25;CL:0000827,1.96e-13,25;CL:0000988,2.29e-09,177;CL:0000838,5.50e-09,52;CL:0000542,8.25e-09,53;CL:0000051,8.25e-09,53;CL:0000893,7.52e-08,2;CL:0002489,7.52e-08,2;CL:0000809,7.52e-08,2;CL:0000808,7.52e-08,2;CL:0000894,7.52e-08,2;CL:0000806,7.52e-08,2;CL:0000807,7.52e-08,2;CL:0000805,7.52e-08,2;CL:0002425,7.52e-08,2|ontology_enrichment_development_v019=CL:0002425;7.03e-08;2|ontology_enrichment_disease=DOID:2531!4.89e-12!51;DOID:0060083!4.89e-12!51;DOID:0060058!3.53e-08!10;DOID:1240!2.65e-07!39|ontology_enrichment_disease_v019=DOID:0060060;1.84e-14;1!DOID:4960;1.84e-14;1!DOID:0060061;1.84e-14;1!DOID:0070004;1.84e-14;1!DOID:8691;1.84e-14;1!DOID:2531;2.11e-14;51!DOID:0060083;2.11e-14;51!DOID:1240;1.29e-08;39|ontology_enrichment_disease_v019_2=DOID:2531,3.11e-20,51;DOID:0060083,3.11e-20,51;DOID:0060060,1.07e-14,1;DOID:0060061,1.07e-14,1;DOID:8691,1.07e-14,1;DOID:4960,1.41e-14,1;DOID:0070004,1.41e-14,1;DOID:1240,4.01e-12,39;DOID:0050686,7.37e-07,137|ontology_enrichment_uberon=UBERON:0002370!3.63e-12!4;UBERON:0005058!3.63e-12!4;UBERON:0009113!3.63e-12!4;UBERON:0003295!3.63e-12!4;UBERON:0005562!3.63e-12!4;UBERON:0004177!1.15e-11!7;UBERON:0000974!2.46e-08!10;UBERON:0000178!2.92e-08!15;UBERON:0000179!2.92e-08!15;UBERON:0000463!2.92e-08!15;UBERON:0003351!2.96e-08!6;UBERON:0001042!3.81e-08!10;UBERON:0009145!3.81e-08!10;UBERON:0006562!2.07e-07!11|ontology_enrichment_uberon_v019=UBERON:0002370;4.08e-27;2!UBERON:0005058;4.08e-27;2!UBERON:0009113;4.08e-27;2!UBERON:0002390;9.02e-13;32!UBERON:0002331;1.65e-12;10!UBERON:0004177;1.85e-11;5!UBERON:0005057;1.85e-11;5!UBERON:0000178;1.58e-08;15!UBERON:0000179;1.58e-08;15!UBERON:0000463;1.58e-08;15|ontology_enrichment_uberon_v019_2=UBERON:0002370,8.59e-30,4;UBERON:0005058,8.59e-30,4;UBERON:0009113,8.59e-30,4;UBERON:0003295,8.59e-30,4;UBERON:0005562,8.59e-30,4;UBERON:0003351,4.11e-20,6;UBERON:0004177,2.44e-17,7;UBERON:0005057,2.44e-17,7;UBERON:0002331,1.75e-12,10;UBERON:0000358,1.75e-12,10;UBERON:0000307,1.75e-12,10;UBERON:0000091,1.75e-12,10;UBERON:0000087,1.75e-12,10;UBERON:0007010,1.75e-12,10;UBERON:0007806,1.75e-12,10;UBERON:0008780,1.75e-12,10;UBERON:0005728,1.75e-12,10;UBERON:0000974,2.49e-12,10;UBERON:0003408,2.49e-12,10;UBERON:0001042,2.49e-12,10;UBERON:0009145,2.49e-12,10;UBERON:0006562,2.90e-11,11;UBERON:0009722,2.90e-11,11;UBERON:0007690,2.90e-11,11;UBERON:0000178,1.64e-08,15;UBERON:0000179,1.64e-08,15;UBERON:0000463,1.64e-08,15;UBERON:0008814,4.29e-07,18;UBERON:0001557,9.54e-07,19|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0.0774672005803016,0,0.293600439334847,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393419540227666,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0,0.164437904603676,0.276350017785848,0.289803085735052,0,0.267540828089713,2.09071047609954,0.453237370790265,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32438929824395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34502172792233,0,0.215627574859517,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0,3.34366663737546,7.33360854552583,0,3.06408592211787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67043704337145,0,0,0,0,0,0,0,0.780103689942349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.3947936752326,0,0,0.451191321234361,0,0,0,0,0,0,0,0,0,0,0,1.18608451472249,1.48276726735803,2.19286093961456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79988656269437,0,1.54993481694734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476128862927481,1.35636710655613,1.1794195716213,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0|short_description=p6@SH2D1A}}
{{FFCP
|DHSsupport=supported
|DPIdataset=robust
|EntrezGene=4068
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=10820
|TSSclassifier=strong
|UniProt=
|association_with_transcript=0bp_to_uc010nqx.2_5end
|coexpression_cluster_id=C386
|description=CAGE_peak_6_at_SH2D1A_5end
|id=chrX:123480214..123480227,+
|ontology_enrichment_celltype=CL:0000084!2.12e-18!25;CL:0000827!2.12e-18!25;CL:0000838!3.70e-18!52;CL:0000542!9.40e-18!53;CL:0000051!9.40e-18!53;CL:0000080!8.38e-14!6;CL:0000988!1.86e-11!182;CL:0000037!5.98e-09!172;CL:0000566!5.98e-09!172;CL:0002087!3.93e-08!119;CL:0000738!2.27e-07!140;CL:0000623!2.42e-07!3;CL:0000825!2.42e-07!3
|ontology_enrichment_celltype_v019=CL:0002127;1.84e-14;1!CL:0000911;1.84e-14;1!CL:0000814;1.84e-14;1!CL:0000084;2.15e-13;25
|ontology_enrichment_celltype_v019_2=CL:0002127,2.11e-14,1;CL:0000914,2.11e-14,1;CL:0000911,2.11e-14,1;CL:0000814,2.11e-14,1;CL:0002042,2.11e-14,1;CL:0002039,2.11e-14,1;CL:0002040,2.11e-14,1;CL:0002041,2.11e-14,1;CL:0000084,1.96e-13,25;CL:0000827,1.96e-13,25;CL:0000988,2.29e-09,177;CL:0000838,5.50e-09,52;CL:0000542,8.25e-09,53;CL:0000051,8.25e-09,53;CL:0000893,7.52e-08,2;CL:0002489,7.52e-08,2;CL:0000809,7.52e-08,2;CL:0000808,7.52e-08,2;CL:0000894,7.52e-08,2;CL:0000806,7.52e-08,2;CL:0000807,7.52e-08,2;CL:0000805,7.52e-08,2;CL:0002425,7.52e-08,2
|ontology_enrichment_development_v019=CL:0002425;7.03e-08;2
|ontology_enrichment_disease=DOID:2531!4.89e-12!51;DOID:0060083!4.89e-12!51;DOID:0060058!3.53e-08!10;DOID:1240!2.65e-07!39
|ontology_enrichment_disease_v019=DOID:0060060;1.84e-14;1!DOID:4960;1.84e-14;1!DOID:0060061;1.84e-14;1!DOID:0070004;1.84e-14;1!DOID:8691;1.84e-14;1!DOID:2531;2.11e-14;51!DOID:0060083;2.11e-14;51!DOID:1240;1.29e-08;39
|ontology_enrichment_disease_v019_2=DOID:2531,3.11e-20,51;DOID:0060083,3.11e-20,51;DOID:0060060,1.07e-14,1;DOID:0060061,1.07e-14,1;DOID:8691,1.07e-14,1;DOID:4960,1.41e-14,1;DOID:0070004,1.41e-14,1;DOID:1240,4.01e-12,39;DOID:0050686,7.37e-07,137
|ontology_enrichment_uberon=UBERON:0002370!3.63e-12!4;UBERON:0005058!3.63e-12!4;UBERON:0009113!3.63e-12!4;UBERON:0003295!3.63e-12!4;UBERON:0005562!3.63e-12!4;UBERON:0004177!1.15e-11!7;UBERON:0000974!2.46e-08!10;UBERON:0000178!2.92e-08!15;UBERON:0000179!2.92e-08!15;UBERON:0000463!2.92e-08!15;UBERON:0003351!2.96e-08!6;UBERON:0001042!3.81e-08!10;UBERON:0009145!3.81e-08!10;UBERON:0006562!2.07e-07!11
|ontology_enrichment_uberon_v019=UBERON:0002370;4.08e-27;2!UBERON:0005058;4.08e-27;2!UBERON:0009113;4.08e-27;2!UBERON:0002390;9.02e-13;32!UBERON:0002331;1.65e-12;10!UBERON:0004177;1.85e-11;5!UBERON:0005057;1.85e-11;5!UBERON:0000178;1.58e-08;15!UBERON:0000179;1.58e-08;15!UBERON:0000463;1.58e-08;15
|ontology_enrichment_uberon_v019_2=UBERON:0002370,8.59e-30,4;UBERON:0005058,8.59e-30,4;UBERON:0009113,8.59e-30,4;UBERON:0003295,8.59e-30,4;UBERON:0005562,8.59e-30,4;UBERON:0003351,4.11e-20,6;UBERON:0004177,2.44e-17,7;UBERON:0005057,2.44e-17,7;UBERON:0002331,1.75e-12,10;UBERON:0000358,1.75e-12,10;UBERON:0000307,1.75e-12,10;UBERON:0000091,1.75e-12,10;UBERON:0000087,1.75e-12,10;UBERON:0007010,1.75e-12,10;UBERON:0007806,1.75e-12,10;UBERON:0008780,1.75e-12,10;UBERON:0005728,1.75e-12,10;UBERON:0000974,2.49e-12,10;UBERON:0003408,2.49e-12,10;UBERON:0001042,2.49e-12,10;UBERON:0009145,2.49e-12,10;UBERON:0006562,2.90e-11,11;UBERON:0009722,2.90e-11,11;UBERON:0007690,2.90e-11,11;UBERON:0000178,1.64e-08,15;UBERON:0000179,1.64e-08,15;UBERON:0000463,1.64e-08,15;UBERON:0008814,4.29e-07,18;UBERON:0001557,9.54e-07,19
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0.0774672005803016,0,0.293600439334847,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393419540227666,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0,0.164437904603676,0.276350017785848,0.289803085735052,0,0.267540828089713,2.09071047609954,0.453237370790265,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32438929824395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34502172792233,0,0.215627574859517,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0,3.34366663737546,7.33360854552583,0,3.06408592211787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67043704337145,0,0,0,0,0,0,0,0.780103689942349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.3947936752326,0,0,0.451191321234361,0,0,0,0,0,0,0,0,0,0,0,1.18608451472249,1.48276726735803,2.19286093961456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79988656269437,0,1.54993481694734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476128862927481,1.35636710655613,1.1794195716213,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0
|short_description=p6@SH2D1A
}}

Revision as of 06:51, 23 January 2014

Short description:p6@SH2D1A
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_6_at_SH2D1A_5end
Coexpression cluster:C386_chronic_acute_Hodgkin_NK_thymus_liver_blood
Association with transcript: 0bp_to_uc010nqx.2_5end
EntrezGene:SH2D1A
HGNC: 10820
UniProt: NA
Genome view:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression



0
5
10
15
20




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Hg19::chrX:123480214..123480227,%2B&oldid=3264099"