FFCP PHASE1:Hg19::chr6:31553937..31553943,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=7940 | |EntrezGene=entrezgene:7940 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=14189 | |HGNC=HGNC:14189 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt=A8MT08,O00453,Q5STA6 | |UniProt=uniprot:A8MT08,uniprot:O00453,uniprot:Q5STA6 | ||
|association_with_transcript=-12bp_to_ENST00000376100,ENST00000376111,ENST00000438075,NM_205838,NM_205839,NR_029461,NR_029462_5end | |association_with_transcript=-12bp_to_ENST00000376100,ENST00000376111,ENST00000438075,NM_205838,NM_205839,NR_029461,NR_029462_5end | ||
|cluster_id=chr6:31553937..31553943,+ | |||
|description=CAGE_peak_12_at_LST1_5end | |description=CAGE_peak_12_at_LST1_5end | ||
|id=chr6:31553937..31553943,+ | |id=chr6:31553937..31553943,+ | ||
Revision as of 23:59, 30 July 2015
| Short description: | p12@LST1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_12_at_LST1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -12bp_to_ENST00000376100, ENST00000376111, ENST00000438075, NM_205838, NM_205839, NR_029461, NR_029462_5end |
| EntrezGene: | 7940 |
| HGNC: | 14189 |
| UniProt: | A8MT08O00453Q5STA6 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p12@LST1 |
|---|
0.0
0.5
1.0
1.5
2.0
2.5
3.0
3.5
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| intermediate monocyte | 1.50e-29 | 9 |
| CD14-positive, CD16-positive monocyte | 1.50e-29 | 9 |
| myeloid cell | 2.05e-26 | 108 |
| common myeloid progenitor | 2.05e-26 | 108 |
| non-classical monocyte | 1.07e-23 | 3 |
| CD14-low, CD16-positive monocyte | 1.07e-23 | 3 |
| hematopoietic stem cell | 2.69e-21 | 168 |
| myeloid leukocyte | 4.83e-20 | 72 |
| hematopoietic cell | 5.18e-20 | 177 |
| monopoietic cell | 1.29e-18 | 59 |
Showing 1 to 10 of 29 entries
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic system | 4.45e-14 | 98 |
| blood island | 4.45e-14 | 98 |
| bone marrow | 5.55e-14 | 76 |
| bone element | 8.46e-13 | 82 |
| hemolymphoid system | 1.58e-12 | 108 |
| skeletal element | 1.83e-11 | 90 |
| immune system | 5.05e-11 | 93 |
| skeletal system | 4.28e-10 | 100 |
| connective tissue | 2.36e-07 | 371 |
Showing 1 to 9 of 9 entries
| Ontology term | p-value | n |
|---|---|---|
| myeloid leukemia | 1.77e-18 | 31 |
| leukemia | 8.04e-18 | 39 |
| hematologic cancer | 3.08e-13 | 51 |
| immune system cancer | 3.08e-13 | 51 |
| syndrome | 9.74e-09 | 1 |
Showing 1 to 5 of 5 entries
