FFCP PHASE2:Hg19::chr1:109419762..109419796,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:29899 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:29501 |TSScla...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=29899 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=29501 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=B0QZD0 | ||
|association_with_transcript=-81bp_to_ENST00000435475_5end | |association_with_transcript=-81bp_to_ENST00000435475_5end | ||
|cluster_id=chr1:109419762..109419796,+ | |cluster_id=chr1:109419762..109419796,+ | ||
Latest revision as of 20:29, 15 September 2015
| Short description: | p2@GPSM2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_GPSM2_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -81bp_to_ENST00000435475_5end |
| EntrezGene: | GPSM2 |
| HGNC: | 29501 |
| UniProt: | B0QZD0 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@GPSM2 |
|---|
0
25
50
75
100
125
150
175
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| ectoderm-derived structure | 9.88e-30 | 171 |
| ectoderm | 9.88e-30 | 171 |
| presumptive ectoderm | 9.88e-30 | 171 |
| nervous system | 1.54e-26 | 89 |
| central nervous system | 4.67e-25 | 81 |
| organ system subdivision | 2.82e-23 | 223 |
| neural tube | 1.17e-21 | 56 |
| neural rod | 1.17e-21 | 56 |
| future spinal cord | 1.17e-21 | 56 |
| neural keel | 1.17e-21 | 56 |
Showing 1 to 10 of 36 entries
