FFCP PHASE2:Hg19::chr7:142131914..142131937,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene= |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding |HGNC=HGNC:12223 |TSSclassifier=strong |UniProt=unipr...") |
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|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | ||
|HGNC= | |HGNC=12223 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=A0A599 | ||
|association_with_transcript=0bp_to_ENST00000390375,uc010lnz.1_5end | |association_with_transcript=0bp_to_ENST00000390375,uc010lnz.1_5end | ||
|cluster_id=chr7:142131914..142131937,- | |cluster_id=chr7:142131914..142131937,- | ||
Latest revision as of 19:46, 16 September 2015
| Short description: | p2@TRBV5-6 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_TRBV5-6_5end |
| Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
| Association with transcript: | 0bp_to_ENST00000390375, uc010lnz.1_5end |
| EntrezGene: | NA |
| HGNC: | 12223 |
| UniProt: | A0A599 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@TRBV5-6 |
|---|
0.0
2.5
5.0
7.5
10.0
12.5
15.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| mature alpha-beta T cell | 5.63e-66 | 18 |
| alpha-beta T cell | 5.63e-66 | 18 |
| immature T cell | 5.63e-66 | 18 |
| mature T cell | 5.63e-66 | 18 |
| immature alpha-beta T cell | 5.63e-66 | 18 |
| T cell | 5.12e-52 | 25 |
| pro-T cell | 5.12e-52 | 25 |
| CD8-positive, alpha-beta T cell | 2.26e-46 | 11 |
| lymphoid lineage restricted progenitor cell | 1.80e-25 | 52 |
| CD4-positive, alpha-beta T cell | 3.55e-25 | 6 |
Showing 1 to 10 of 22 entries
| Ontology term | p-value | n |
|---|---|---|
| blood | 2.45e-12 | 15 |
| haemolymphatic fluid | 2.45e-12 | 15 |
| organism substance | 2.45e-12 | 15 |
| thymus | 9.99e-11 | 4 |
| hemolymphoid system gland | 9.99e-11 | 4 |
| thymic region | 9.99e-11 | 4 |
| pharyngeal gland | 9.99e-11 | 4 |
| thymus primordium | 9.99e-11 | 4 |
| pharyngeal epithelium | 2.77e-07 | 6 |
| chordate pharynx | 3.61e-07 | 10 |
Showing 1 to 10 of 11 entries
