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MCL coexpression mm9:855

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:120911138..120911151,-p@chr10:120911138..120911151
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Mm9::chr10:41996698..41996706,+p@chr10:41996698..41996706
+
Mm9::chr10:41997406..41997420,-p@chr10:41997406..41997420
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Mm9::chr15:79518426..79518443,+p@chr15:79518426..79518443
+
Mm9::chr18:5334307..5334329,-p@chr18:5334307..5334329
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Mm9::chr8:26708166..26708177,+p@chr8:26708166..26708177
+
Mm9::chr8:75016914..75016923,+p3@ENSMUST00000167312
p3@uc009mgf.1
Mm9::chr9:37156125..37156134,+p@chr9:37156125..37156134
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
hematopoietic cell5.39e-1532
hematopoietic oligopotent progenitor cell5.39e-1532
hematopoietic stem cell5.39e-1532
angioblastic mesenchymal cell5.39e-1532
hematopoietic multipotent progenitor cell5.39e-1532
lymphoid lineage restricted progenitor cell6.03e-1512
T cell9.09e-1411
pro-T cell9.09e-1411
lymphocyte1.68e-1313
common lymphoid progenitor1.68e-1313
mature alpha-beta T cell2.53e-129
alpha-beta T cell2.53e-129
immature T cell2.53e-129
mature T cell2.53e-129
immature alpha-beta T cell2.53e-129
nucleate cell2.88e-1216
hematopoietic lineage restricted progenitor cell1.10e-1125
intestinal epithelial cell1.94e-119
epithelial cell of alimentary canal1.94e-119
leukocyte4.52e-1117
nongranular leukocyte4.52e-1117
CD4-positive, alpha-beta T cell4.71e-118
connective tissue cell1.66e-0946
mesenchymal cell1.66e-0946
stem cell1.31e-0897
thymocyte2.02e-086
double negative thymocyte2.02e-086
naive T cell2.02e-086
double-positive, alpha-beta thymocyte2.02e-086
CD4-positive, alpha-beta thymocyte2.02e-086
naive thymus-derived CD4-positive, alpha-beta T cell2.02e-086
DN4 thymocyte2.02e-086
DN1 thymic pro-T cell2.02e-086
DN2 thymocyte2.02e-086
DN3 thymocyte2.02e-086
immature single positive thymocyte2.02e-086
early T lineage precursor2.02e-086
mature CD4 single-positive thymocyte2.02e-086
resting double-positive thymocyte2.02e-086
double-positive blast2.02e-086
CD69-positive double-positive thymocyte2.02e-086
CD69-positive, CD4-positive single-positive thymocyte2.02e-086
CD4-positive, CD8-intermediate double-positive thymocyte2.02e-086
CD24-positive, CD4 single-positive thymocyte2.02e-086
somatic cell2.10e-08118
brush border epithelial cell6.55e-086
gut absorptive cell6.55e-086
absorptive cell6.55e-086
enterocyte6.55e-086
somatic stem cell1.45e-0791
multi fate stem cell1.45e-0791
motile cell4.14e-0754
animal cell9.28e-07115
eukaryotic cell9.28e-07115


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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