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MCL coexpression mm9:510

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:24431715..24431724,-p5@Enpp1
Mm9::chr10:24431739..24431755,-p3@Enpp1
Mm9::chr12:104932242..104932259,-p@chr12:104932242..104932259
-
Mm9::chr12:104932867..104932883,-p2@Serpina1f
Mm9::chr12:104932884..104932890,-p7@Serpina1f
Mm9::chr12:104932896..104932913,-p3@Serpina1f
Mm9::chr12:104932923..104932928,-p6@Serpina1f
Mm9::chr14:23599754..23599757,-p@chr14:23599754..23599757
-
Mm9::chr14:30665533..30665556,-p@chr14:30665533..30665556
-
Mm9::chr2:151931776..151931792,-p@chr2:151931776..151931792
-
Mm9::chr2:164047341..164047413,-p1@Wfdc15b
Mm9::chr7:93924449..93924458,-p6@Folh1
Mm9::chr8:26880055..26880065,-p@chr8:26880055..26880065
-
Mm9::chrX:136343134..136343167,+p@chrX:136343134..136343167
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0008464gamma-glutamyl hydrolase activity0.0175270426943596
GO:0004528phosphodiesterase I activity0.0175270426943596
GO:0043275glutamate carboxypeptidase II activity0.0175270426943596
GO:0008242omega peptidase activity0.0175270426943596
GO:0004237membrane dipeptidase activity0.0175270426943596
GO:0016338calcium-independent cell-cell adhesion0.0219034020359721
GO:0004551nucleotide diphosphatase activity0.0219034020359721
GO:0030279negative regulation of ossification0.024637277031428
GO:0006760folic acid and derivative metabolic process0.0267620247908273
GO:0046851negative regulation of bone remodeling0.0278610226768299
GO:0016805dipeptidase activity0.0278610226768299
GO:0005886plasma membrane0.0341921914068935
GO:0030278regulation of ossification0.0403805849468389
GO:0051241negative regulation of multicellular organismal process0.0409913083966342
GO:0046850regulation of bone remodeling0.0409913083966342
GO:0004181metallocarboxypeptidase activity0.0409913083966342



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
kidney7.58e-3114
kidney mesenchyme7.58e-3114
upper urinary tract7.58e-3114
kidney rudiment7.58e-3114
kidney field7.58e-3114
urinary system structure7.12e-2418
renal system1.38e-2219
cavitated compound organ2.21e-2021
epididymis2.17e-103
excretory tube2.17e-103
mesonephric epithelium2.17e-103
mesonephric tubule2.17e-103
nephric duct2.17e-103
kidney epithelium2.17e-103
renal duct2.17e-103
mesonephric duct2.17e-103
pronephric duct2.17e-103
compound organ1.31e-0943
abdomen element2.44e-0849
abdominal segment element2.44e-0849
abdominal segment of trunk2.44e-0849
abdomen2.44e-0849
mesonephros5.22e-084
duct of male reproductive system5.22e-084
male genital duct5.22e-084
pronephros5.22e-084
internal male genitalia5.22e-084
nephrogenic cord5.22e-084
urogenital ridge5.22e-084
pronephric mesoderm5.22e-084
rostral part of nephrogenic cord5.22e-084
presumptive pronephric mesoderm5.22e-084


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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