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CL:0002371

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Name:somatic cell
Namespace:FANTOM
Definition:"A cell of an organism that does not pass on its genetic material to the organism's offspring (i.e. a non-germ line cell)." [GOC:tfm, ISBN:0721662544]
Xrefs:
links:

BTO:0001268
FMA:72300

WBbt:0008378
Created by:tmeehan
Creation date:2010-09-24T09:44:42Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000003(native cell)



Children


is a:CL:0000068 (duct epithelial cell),CL:0000075 (columnar/cuboidal epithelial cell),CL:0000079 (stratified epithelial cell),CL:0000083 (epithelial cell of pancreas),CL:0000098 (sensory epithelial cell),CL:0000150 (glandular epithelial cell),CL:0000182 (hepatocyte),CL:0000186 (myofibroblast cell),CL:0000187 (muscle cell),CL:0000188 (cell of skeletal muscle),CL:0000244 (transitional epithelial cell),CL:0000349 (extraembryonic cell),CL:0000666 (fenestrated cell),CL:0000680 (muscle precursor cell),CL:0000723 (somatic stem cell),CL:0000988 (hematopoietic cell),CL:0002076 (endo-epithelial cell),CL:0002077 (ecto-epithelial cell),CL:0002078 (meso-epithelial cell),CL:0002222 (vertebrate lens cell),CL:0002319 (neural cell),CL:0002320 (connective tissue cell),CL:0002327 (mammary gland epithelial cell),CL:0002494 (cardiocyte),CL:0002535 (epithelial cell of cervix),CL:0002546 (embryonic blood vessel endothelial progenitor cell),CL:0002559 (hair follicle cell),CL:0009004 (retinal cell),CL:1000415 (epithelial cell of gall bladder),CL:1000497 (kidney cell)
disjoint from:CL:0000039 (germ line cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
  • 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
  • 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
  • 10409-106B4 (chronic myelogenous leukemia cell line:KU812)
  • 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
  • 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
  • 10413-106B8 (glioma cell line:GI-1)
  • 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
  • 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
  • 10419-106C5 (breast carcinoma cell line:MDA-MB-453)

... further results Mouse (Mus musculus)

  • 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
  • 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
  • 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
  • 10409-106B4 (chronic myelogenous leukemia cell line:KU812)
  • 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
  • 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
  • 10413-106B8 (glioma cell line:GI-1)
  • 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
  • 10416-106C2 (chronic lymphocytic leukemia (T-CLL) cell line:SKW-3)
  • 10419-106C5 (breast carcinoma cell line:MDA-MB-453)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002371 (somatic cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results for this cluster