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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005256!1.12e-10!143;UBERON:0000486!1.97e-09!82;UBERON:0000490!1.89e-08!138;UBERON:0000914!2.44e-08!83;UBERON:0002329!2.44e-08!83;UBERON:0003077!2.44e-08!83;UBERON:0003059!2.44e-08!83;UBERON:0007282!2.44e-08!83;UBERON:0009618!2.44e-08!83;UBERON:0007285!2.44e-08!83;UBERON:0004290!7.01e-08!70;UBERON:0003914!1.65e-07!118;UBERON:0002049!8.11e-07!79;UBERON:0007798!8.11e-07!79
|ontology_enrichment_uberon=UBERON:0005256!1.12e-10!143;UBERON:0000486!1.97e-09!82;UBERON:0000490!1.89e-08!138;UBERON:0000914!2.44e-08!83;UBERON:0002329!2.44e-08!83;UBERON:0003077!2.44e-08!83;UBERON:0003059!2.44e-08!83;UBERON:0007282!2.44e-08!83;UBERON:0009618!2.44e-08!83;UBERON:0007285!2.44e-08!83;UBERON:0004290!7.01e-08!70;UBERON:0003914!1.65e-07!118;UBERON:0002049!8.11e-07!79;UBERON:0007798!8.11e-07!79
|tfbs_overrepresentation=0.34609,0.148901,0.000203867,0.122235,0.448029,0.595498,0.110615,0.173242,0.0848916,0.0670884,0.329951,0.493877,0.108236,0.301671,0.348998,0.15667,0.333184,0.031679,0.134803,0.262834,0.427322,0.315644,9.40274e-05,0.233475,0.107054,0.476489,0.465564,0.224005,0.338892,0.230018,0.457523,0.275959,2.22186e-07,0.463487,0.167712,0.209702,0.37685,0.110518,0.289619,0.168138,0.237041,0.0642921,0.331229,0.418594,0.290836,0.093749,0.0981932,0.413814,0.269921,0.000446377,0.0743477,0.138034,0.176339,0.229169,0.0222363,0.0991916,0.261507,0.471522,0.195469,0.257345,0.0765682,0.350502,0.264034,0.189928,0.138981,0.129036,0.685923,0.152128,0.21338,0.0134525,0.362556,0.17045,0.220164,0.287531,0.0198121,0.0449986,0.237072,0.112317,0.0962742,0.0192234,0.235123,0.0324959,0.109358,0.0427258,0.065903,0.538689,0.162509,0.464915,0.918195,0.158699,0.212656,0.12683,0.234568,0.121395,0.21181,0.278097,0.904111,7.35792e-06,0.228604,0.574443,0.146046,0.0116664,0.335028,0.0958161,0.482863,0.105454,0.168814,0.667249,0.0657012,0.566891,0.415891,0.08811,0.350777,0.0464689,0.247671,0.0874941,0.0533212,0.144037,0.329117,0.208244,0.385121,0.475093,0.331405,0.212715,0.250229,0.096075,0.223928,0.0389643,0.209445,0.320588,0.15109,0.187322,0.145395,0.0596149,0.301276,0.26293,0.163757,0.140842,0.0856983,0.0105126,0.059589,0.305135,0.455648,0.363816,0.225597,0.174334,0.242306,0.209139,0.100504,0.290656,0.0228402,0.338748,0.0168907,0.069324,0.109875,0.283569,0.187146,0.499118,0.131992,0.087425,0.497965,0.234343,0.281603,0.347181,0.573425,0.276476,0.103223,0.304631,0.104025,0.631236,0.410329,0.326422,0.495126,0.137927,0.199209,0.222543,0.331842,0.414399,0.0162862,0.0922244,0.369521,0.29418,0.0714241,0.279284,0.18472,0.286375,0.416713,0.10358,0.206008,0.398511,0.0374302,0.424801,0.295169,0.0332789,0.272958,0.120656,0.195303,0.152795,0.170383,0.26639,0.220771,0.153064,0.0801204,0.153558,0.0592113,0.551041,0.210133,0.355444,0.459969,0.0162624,0.117684,0.254651,0.291346,0.273458,8.2978e-05,0.088345,0.380174,0.0333953,0.159292,0.251613,0.00837245,0.000308885,0.363941,0.373873,0.185037,0.30302,0.328766,0.213152,0.153196,0.151857,0.0273091,0.371554,0.10772,0.191224,0.235781,0.00243628,0.121035,2.0861e-07,0.378787,0.136881,0.415649,0.681658,0.241356,0.206521,0.0437482,0.00752532,0.202866,0.27072,0.711768,0.282438,0.369936,1.95618e-11,0.0182852,1.04531e-05,0.240662,0.371178,0.261035,0.0232393,0.174963,0.00996574,0.156722,1.63982e-05,0.378539,0.306175,0.0894087,0.201841,0.202064,0.22706,0.284712,0.188919,0.581012,0.160003,0.0084863,0.793729,0.214569,0.0982663,0.310576,0.0103178,0.00731623,9.21306e-05,0.0203531,0.00759854,7.55292e-06,0.813753,0.297165,0.0187428,0.194284,0.00563365,0.009058,0.00345769,0.00056773,0.657245,0.388628,0.0047794,0.334233,7.33873e-05,0.0109739,0.000388461,0.404012,0.000503955,0.410376,0.037176,0.424714,0.699335,0.100931,0.770296,0.267081,0.0939123,5.90788e-06,0.773523,0.13413,0.231986,0.0634757,0.595049,0.0040881,0.000298585,0.0574778,9.5662e-05,0.0445736,0.00197107,0.616321,0.101267,0.270213,0.147014,0.556408,0.705426,3.831e-08,0.0817624,2.93211e-05,0.601376,0.0767612,0.082836,0.7626,0.0668626,0.249962,0.202294,0.00908113,0.668746,1.27749e-05,0.415455,0.0064993,0.0942604,0.166209,0.576349,0.162604,0.421708,0.106462,5.19498e-09,0.569508,0.0506917,0.000142458,0.302577,0.0154654,0.533408,0.000308666,0.00190609,0.378278,0.16896,0.0179191,0.104093,0.435818,2.93065e-06,0.410586,0.171325,0.0319009,0.0631918,9.29925e-09,0.0767248,0.000596123,0.000595338,0.0159579,0.115811,0.187131,0.500188,0.30826,0.685681,0.285462,0.605844,0.308817,0.25072,0.597604,0.652313,0.0133747,0.580536,0.00562914,0.189341,0.498619,0.098216,0.117692,0.364444,0.000114439,0.060644,0.00225392,0.180064,0.131808,0.764428,2.39901e-07,0.341076,0.0668346,0.727086,0.7159,0.211818,0.488786,0.539342,0.357127,0.000311716,5.65347e-05,0.191277,0.320286,0.241774,0.622196,0.014847,0.224985,0.309445,0.623269,0.0754444,0.00100165,0.286808,0.0156207,0.225034,2.28069e-05,0.695117,0.150277,0.163803,0.058241,0.00153485,0.811249,0.513171,0.127155,0.051523,1.6289e-06,0.784063,2.74515e-05,0.668829,0.00168451,0.220681,0.334789,0.221938,0.859142,0.0117865,0.000110327,0.0375058,0.157469,0.428977,0.220397,0.000647648,0.00104665,0.0177422,0.679442,0.0191137,0.318598,0.0959967,0.402141,0.0592011,0.494853,0.63705,0.175401,0.141685,0.434651,0.194711,0.146244,0.340075,0.490427,1.08348e-09,0.00536333,0.460233,0.433218,0.0406844,0.00246674,0.111931,0.0168525,0.302737,0.320418,0.260259,0.573186,0.158807,0.722166,0.0470509,0.251803,0.583243,0.732825,0.119202,0.390797,0.277129,0.255099,0.222257,0.214812,0.37149,0.260746,0.112737,0.0103413,0.296578,0.308422,0.467323,0.0206292,0.313367,0.127781,0.206068,0.168116,0.415102,0.00410602,0.483384,0.660114,0.115487,0.314851,0.427434,0.123376,0.448411,0.404386,0.305458,0.09495,0.00236848,0.390074,0.216979,0.234229,0.0297344,0.488747,0.0373621,0.576183,0.0127838,0.398796,0.333467,0.469524,0.0781888,0.313482,0.114368,0.00935228,0.130122,0.0735532,0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}}
}}

Revision as of 16:49, 8 August 2012


Full id: C1059_Fibroblast_Adipocyte_Smooth_Chondrocyte_neuroectodermal_Hair_Preadipocyte



Phase1 CAGE Peaks

Hg19::chr19:13050341..13050390,-p@chr19:13050341..13050390
-
Hg19::chr19:13051088..13051148,-p@chr19:13051088..13051148
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Hg19::chr19:13051159..13051216,-p@chr19:13051159..13051216
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Hg19::chr19:13051603..13051646,-p@chr19:13051603..13051646
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Hg19::chr19:13054556..13054630,-p3@CALR
Hg19::chr19:13054632..13054644,-p19@CALR
Hg19::chr19:13054647..13054681,-p9@CALR
Hg19::chr19:13054682..13054702,-p14@CALR


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
animal cell3.24e-26679
eukaryotic cell3.24e-26679
non-terminally differentiated cell1.39e-19180
somatic cell1.56e-19591
native cell2.47e-14722
embryonic cell2.59e-13248
mesodermal cell3.52e-11119
fibroblast3.01e-0975
contractile cell5.16e-0959
electrically responsive cell7.18e-0960
electrically active cell7.18e-0960
muscle precursor cell3.80e-0857
myoblast3.80e-0857
multi-potent skeletal muscle stem cell3.80e-0857
muscle cell1.32e-0754
multi fate stem cell1.74e-07430
somatic stem cell1.79e-07436
stem cell5.24e-07444
Uber Anatomy
Ontology termp-valuen
trunk mesenchyme1.12e-10143
multilaminar epithelium1.97e-0982
unilaminar epithelium1.89e-08138
somite2.44e-0883
paraxial mesoderm2.44e-0883
presomitic mesoderm2.44e-0883
presumptive segmental plate2.44e-0883
trunk paraxial mesoderm2.44e-0883
presumptive paraxial mesoderm2.44e-0883
dermomyotome7.01e-0870
epithelial tube1.65e-07118
vasculature8.11e-0779
vascular system8.11e-0779


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.