FF:11902-125F3: Difference between revisions

Revision as of 16:56, 29 June 2012

Name:	migratory langerhans cells, donor2
Species:
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	NA
age	NA
cell type	langerhans cell
cell line	NA
company	NA
collaboration	Teunis Geijtenbeek
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	LC-B
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011136 human migratory langerhans cells sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000034 (stem cell)
0002032 (hematopoietic oligopotent progenitor cell)
0000763 (myeloid cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000453 (Langerhans cell)
0000037 (hematopoietic stem cell)
0000566 (angioblastic mesenchymal cell)
0000049 (common myeloid progenitor)
0000837 (hematopoietic multipotent progenitor cell)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
NA

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 6: / Line 6: @@
 |created_by=
 |creation_date=
+|datafreeze_phase=1
 |def=
 |expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.96!912.78!IRF4;;chr11:47400078..47400106,-!p1@SPI1!2.29!192.12!SPI1;;chr20:20348740..20348757,+!p1@INSM1!2.25!175.78!INSM1;;chr9:102584262..102584276,+!p1@NR4A3!1.88!162.23!NR4A3;;chr19:50922187..50922204,+!p1@SPIB!1.79!61.25!SPIB;;chr4:185395590..185395627,-!p3@IRF2!1.67!56.87!IRF2;;chr1:25291475..25291511,-!p2@RUNX3!1.67!46.10!RUNX3;;chr1:25256756..25256774,-!p1@RUNX3!1.64!78.92!RUNX3;;chr2:61108808..61108821,+!p3@REL!1.64!52.88!REL;;chr2:61108695..61108753,+!p1@REL!1.62!265.20!REL;;chr9:102584128..102584144,+!p3@NR4A3!1.60!72.81!NR4A3;;chr6:106534192..106534224,+!p1@PRDM1!1.51!86.63!PRDM1;;chr9:102584159..102584174,+!p2@NR4A3!1.50!54.47!NR4A3;;chr2:68592406..68592424,+!p1@PLEK!1.50!30.29!PLEK;;chr1:157108130..157108173,-!p1@ETV3!1.47!198.10!ETV3;;chr19:45252008..45252024,+!p2@BCL3!1.44!85.30!BCL3;;chr7:50344251..50344288,+!p3@IKZF1!1.44!26.44!IKZF1;;chr10:104155480..104155534,+!p2@NFKB2!1.42!160.10!NFKB2;;chr2:61108771..61108789,+!p4@REL!1.41!37.20!REL;;chr7:50343634..50343717,+!p2@IKZF1!1.41!24.98!IKZF1;;chr2:192015701..192015743,-!p1@STAT4!1.37!30.43!STAT4;;chr7:50344289..50344323,+!p1@IKZF1!1.37!22.32!IKZF1;;chr9:102584241..102584261,+!p4@NR4A3!1.35!32.82!NR4A3;;chr6:106534230..106534254,+!p2@PRDM1!1.34!52.08!PRDM1;;chr1:151319654..151319698,-!p2@RFX5!1.33!43.58!RFX5;;chr11:47400062..47400077,-!p2@SPI1!1.33!20.59!SPI1;;chr12:11802753..11802834,+!p2@ETV6!1.31!93.27!ETV6;;chr5:71803177..71803255,-!p1@ZNF366!1.31!19.27!ZNF366;;chr2:8822176..8822196,+!p1@ID2!1.28!2478.99!ID2;;chr19:45579725..45579743,-!p1@ZNF296!1.28!78.92!ZNF296;;chr4:185395633..185395651,-!p2@IRF2!1.28!28.57!IRF2;;chr15:90544532..90544563,+!p1@ZNF710!1.27!34.94!ZNF710;;chr10:35484053..35484076,+!p1@CREM!1.26!42.38!CREM;;chr2:214015343..214015366,-!p3@IKZF2!1.25!16.87!IKZF2;;chr1:8935472..8935488,-!p20@ENO1!1.21!15.28!ENO1;;chr2:214015111..214015179,-!p1@IKZF2!1.20!26.71!IKZF2;;chr2:169312725..169312810,+!p1@CERS6!1.19!348.24!CERS6;;chr16:31885093..31885165,+!p1@ZNF267!1.18!213.25!ZNF267;;chr4:103422499..103422632,+!p1@NFKB1!1.16!275.16!NFKB1;;chr19:3574157..3574180,+!p4@HMG20B!1.15!13.29!HMG20B;;chr9:102584278..102584285,+!p5@NR4A3!1.15!13.29!NR4A3;;chr10:104155659..104155676,+!p4@NFKB2!1.13!15.68!NFKB2;;chr7:150102756..150102772,+!p5@ZNF775!1.13!12.36!ZNF775;;chr2:61108878..61108891,+!p5@REL!1.12!12.22!REL;;chr1:157108746..157108762,-!p4@ETV3!1.10!11.69!ETV3;;chrX:56258844..56258882,+!p1@KLF8!1.09!15.68!KLF8;;chr19:50432132..50432217,+!p2@ATF5!1.08!13.02!ATF5;;chr13:41593425..41593480,-!p1@ELF1!1.07!68.16!ELF1;;chr19:50432453..50432468,+!p1@ATF5!1.04!568.53!ATF5;;chr9:117150254..117150271,-!p1@AKNA!1.04!27.90!AKNA;;chr11:47237922..47237964,+!p4@DDB2!1.04!11.43!DDB2;;chr12:27485785..27485816,+!p1@ARNTL2!1.03!69.09!ARNTL2;;chr2:61108650..61108687,+!p2@REL!1.01!46.50!REL;;chr16:85932760..85932775,+!p1@IRF8!1.01!9.17!IRF8;;chr4:103478257..103478273,+!p28@NFKB1!1.00!9.03!NFKB1;;chr19:3574330..3574393,+!p2@HMG20B!1.00!8.90!HMG20B;;chr2:74229812..74229867,+!p1@TET3!0.99!22.32!TET3;;chr20:62462566..62462631,-!p1@ZBTB46!0.99!17.01!ZBTB46;;chr7:106810484..106810494,+!p4@HBP1!0.99!8.77!HBP1;;chr19:45504688..45504782,+!p1@RELB!0.98!53.28!RELB;;chr10:104154246..104154347,+!p3@NFKB2!0.98!53.28!NFKB2;;chr6:12012170..12012245,+!p1@HIVEP1!0.98!43.98!HIVEP1;;chr10:51572339..51572376,+!p4@NCOA4!0.98!19.53!NCOA4;;chr1:212782094..212782109,+!p1@ATF3!0.95!225.34!ATF3;;chr12:54785074..54785122,-!p2@ZNF385A!0.94!11.96!ZNF385A;;chr2:192015750..192015793,-!p2@STAT4!0.94!10.63!STAT4;;chr3:12330560..12330579,+!p1@PPARG!0.93!8.77!PPARG;;chrX:56258900..56258917,+!p4@KLF8!0.93!7.57!KLF8;;chr15:50647274..50647336,-!p1@GABPB1!0.92!52.88!GABPB1;;chr9:117160738..117160782,-!p2@AKNA!0.92!31.22!AKNA;;chr1:221052776..221052799,+!p1@HLX!0.91!13.29!HLX;;chr11:13299319..13299424,+!p1@ARNTL!0.90!74.14!ARNTL;;chr10:3827371..3827386,-!p2@KLF6!0.90!60.72!KLF6;;chr5:321810..321877,+!p1@AHRR!0.90!22.85!AHRR;;chr12:27485823..27485868,+!p2@ARNTL2!0.89!28.96!ARNTL2;;chr7:17338324..17338341,+!p3@AHR!0.89!23.65!AHR;;chr3:101546827..101546847,+!p2@NFKBIZ!0.89!9.83!NFKBIZ;;chr2:214014959..214015006,-!p4@IKZF2!0.88!6.64!IKZF2;;chr22:41697484..41697496,+!p3@ZC3H7B!0.87!8.37!ZC3H7B;;chr1:6684918..6684936,+!p2@THAP3!0.87!7.97!THAP3;;chr1:221052840..221052875,+!p4@HLX!0.86!7.57!HLX;;chr7:50343895..50343936,+!p5@IKZF1!0.86!6.24!IKZF1;;chr2:214016254..214016282,-!p7@IKZF2!0.84!5.98!IKZF2;;chr11:47399996..47400014,-!p4@SPI1!0.84!5.98!SPI1;;chr14:89883509..89883587,-!p2@FOXN3!0.83!42.52!FOXN3;;chr12:27485762..27485776,+!p3@ARNTL2!0.83!16.48!ARNTL2;;chr1:157108764..157108776,-!p7@ETV3!0.83!5.71!ETV3;;chr2:239148671..239148686,-!p1@HES6!0.82!22.06!HES6;;chr22:41697497..41697515,+!p2@ZC3H7B!0.82!16.21!ZC3H7B;;chr2:231090433..231090469,+!p1@SP140!0.82!5.58!SP140;;chr12:54778471..54778528,-!p1@ZNF385A!0.82!5.58!ZNF385A;;chr3:5021113..5021180,+!p1@BHLHE40!0.81!408.69!BHLHE40;;chr6:12012249..12012266,+!p5@HIVEP1!0.81!9.83!HIVEP1;;chr19:3573282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A!0.59!2.92!STAT5A;;chr19:12273866..12273935,+!p1@ZNF136!0.58!30.69!ZNF136;;chr8:123793860..123793921,+!p2@ZHX2!0.58!8.90!ZHX2;;chr10:3824332..3824425,-!p4@KLF6!0.58!5.05!KLF6;;chr1:8935456..8935467,-!p27@ENO1!0.58!2.79!ENO1;;chr10:3827417..3827428,-!p3@KLF6!0.57!28.70!KLF6;;chr1:40915725..40915808,+!p1@ZNF643!0.57!9.43!ZNF643;;chr2:214016496..214016544,-!p5@IKZF2!0.57!4.12!IKZF2;;chr1:27023752..27023799,+!p4@ARID1A!0.57!3.85!ARID1A;;chr12:54785054..54785072,-!p4@ZNF385A!0.57!3.19!ZNF385A;;chr3:71114066..71114114,-!p1@FOXP1!0.56!67.10!FOXP1;;chr17:36861496..36861586,+!p1@MLLT6!0.56!31.62!MLLT6;;chr12:51566562..51566584,-!p2@TFCP2!0.56!8.64!TFCP2;;chr19:45250948..45250998,+!p3@BCL3!0.56!7.84!BCL3;;chr2:10091815..10091864,+!p1@GRHL1!0.56!3.72!GRHL1;;chr7:63505799..63505904,+!p1@ZNF727!0.56!2.66!ZNF727;;chr14:35873947..35873965,-!p1@NFKBIA!0.55!204.61!NFKBIA;;chr6:109804412..109804458,-!p1@ZBTB24!0.55!28.17!ZBTB24;;chrX:129244454..129244488,-!p1@ELF4!0.55!22.72!ELF4;;chr1:221052700..221052730,+!p5@HLX!0.55!4.25!HLX;;chr1:44679370..44679422,+!p3@DMAP1!0.55!3.59!DMAP1;;chr12:12764917..12764931,+!p4@CREBL2!0.55!3.59!CREBL2;;chrX:129244430..129244442,-!p5@ELF4!0.55!2.52!ELF4;;chr14:75988831..75988847,+!p2@BATF!0.55!2.52!BATF;;chr19:3576938..3576962,+!p9@HMG20B!0.55!2.52!HMG20B;;chr18:3450161..3450183,+!p1@TGIF1!0.54!108.42!TGIF1;;chr11:67007477..67007493,+!p2@KDM2A!0.54!26.44!KDM2A;;chr1:167190091..167190156,+!p1@POU2F1!0.54!24.45!POU2F1;;chr1:156470515..156470542,-!p2@MEF2D!0.54!16.21!MEF2D;;chr20:46130602..46130613,+!p3@NCOA3!0.54!8.50!NCOA3;;chr1:157108282..157108347,-!p3@ETV3!0.54!5.98!ETV3;;chr14:23755247..23755278,-!p2@HOMEZ!0.54!5.71!HOMEZ;;chr1:221053049..221053075,+!p3@HLX!0.54!4.78!HLX;;chr14:69259772..69259790,-!p1@ZFP36L1!0.53!317.95!ZFP36L1;;chr1:14075903..14075940,+!p1@PRDM2!0.53!66.03!PRDM2;;chr14:23755297..23755350,-!p1@HOMEZ!0.53!36.01!HOMEZ;;chrX:129402866..129402880,-!p1@ZNF280C!0.53!17.27!ZNF280C;;chr8:81398444..81398472,+!p1@ZBTB10!0.53!11.96!ZBTB10;;chr6:35227282..35227330,+!p2@ZNF76!0.53!10.89!ZNF76;;chr3:150126416..150126437,+!p3@TSC22D2!0.53!10.76!TSC22D2;;chr22:42229210..42229229,+!p3@SREBF2!0.53!6.64!SREBF2;;chr3:63898321..63898396,+!p3@ATXN7!0.53!6.38!ATXN7;;chr4:103422232..103422241,+!p6@NFKB1!0.53!3.06!NFKB1;;chr7:139762641..139762768,-!p1@PARP12!0.52!40.52!PARP12;;chr3:71179699..71179744,-!p2@FOXP1!0.52!22.06!FOXP1;;chr2:10183651..10183713,+!p1@KLF11!0.52!21.39!KLF11;;chr9:35732647..35732678,+!p2@CREB3!0.52!16.21!CREB3;;chr10:35484804..35484902,+!p2@CREM!0.52!10.89!CREM;;chr19:12444440..12444455,-!p1@ZNF563!0.52!4.52!ZNF563;;chr19:53039233..53039247,+!p2@ZNF808!0.52!3.85!ZNF808;;chr1:202777535..202777556,-!p1@KDM5B!0.51!97.66!KDM5B;;chr19:19932513..19932569,-!p1@ZNF506!0.51!54.87!ZNF506;;chr19:39390587..39390646,+!p1@NFKBIB!0.51!47.17!NFKBIB;;chr7:152133059..152133102,-!p1@MLL3!0.51!46.64!MLL3;;chr11:47236489..47236567,+!p2@DDB2!0.51!39.86!DDB2;;chr21:30671211..30671234,+!p3@BACH1!0.51!13.69!BACH1;;chr19:53073532..53073551,+!p1@ZNF701!0.51!12.76!ZNF701;;chr6:7108569..7108683,+!p3@RREB1!0.51!10.89!RREB1;;chr6:168227611..168227624,+!p2@MLLT4!0.51!3.59!MLLT4;;chr2:231090344..231090361,-!p3@SP110!0.51!2.26!SP110;;chr19:45251395..45251432,+!p8@BCL3!0.51!2.26!BCL3;;chr1:67396044..67396071,+!p3@MIER1!0.50!9.57!MIER1;;chr3:71179746..71179783,-!p7@FOXP1!0.50!9.03!FOXP1;;chr9:37465273..37465338,-!p2@ZBTB5!0.50!6.91!ZBTB5;;chr15:31619535..31619569,+!p5@KLF13!0.50!4.65!KLF13;;chr19:20011731..20011743,+!p3@ZNF93!0.50!3.06!ZNF93;;chr18:3452133..3452150,+!p19@TGIF1!0.50!2.52!TGIF1;;chr2:145274900..145274934,-!p4@ZEB2!0.49!16.48!ZEB2;;chr9:3525968..3526016,-!p1@RFX3!0.49!15.68!RFX3;;chr14:35872453..35872485,-!p2@NFKBIA!0.49!6.24!NFKBIA;;chr11:47235980..47236028,+!p3@DDB2!0.49!5.71!DDB2;;chr19:22235279..22235301,+!p1@ZNF257!0.49!4.65!ZNF257;;chr19:20011696..20011705,+!p4@ZNF93!0.49!2.52!ZNF93;;chrX:56258885..56258896,+!p5@KLF8!0.49!2.13!KLF8;;chr2:214016899..214016926,-!p10@IKZF2!0.49!2.13!IKZF2;;chr20:47894569..47894799,-!p1@ZNFX1!0.48!73.08!ZNFX1;;chr15:31619326..31619390,+!p2@KLF13!0.48!30.96!KLF13;;chr5:172483347..172483407,+!p1@C5orf41!0.48!20.46!CREBRF;;chr12:46123464..46123512,+!p1@ARID2!0.48!15.15!ARID2;;chr2:178128199..178128245,-!p3@NFE2L2!0.48!14.22!NFE2L2;;chr3:12329397..12329433,+!p2@PPARG!0.48!5.58!PPARG;;chr3:178789648..178789661,-!p4@ZMAT3!0.48!3.59!ZMAT3;;chr19:45254529..45254561,+!p10@BCL3!0.48!3.06!BCL3;;chr1:151319318..151319338,-!p3@RFX5!0.48!2.66!RFX5;;chr9:125667739..125667770,-!p4@RC3H2!0.48!2.39!RC3H2;;chr7:50344144..50344157,+!p6@IKZF1!0.48!1.99!IKZF1;;chr22:42229246..42229270,+!p2@SREBF2!0.47!33.35!SREBF2;;chr7:17338266..17338282,+!p1@AHR!0.47!28.43!AHR;;chr7:77428066..77428132,+!p2@PHTF2!0.47!16.87!PHTF2;;chr6:44233297..44233330,-!p2@NFKBIE!0.47!6.51!NFKBIE;;chr9:114287433..114287513,+!p1@ZNF483!0.47!6.24!ZNF483;;chr12:12764947..12764986,+!p2@CREBL2!0.47!4.52!CREBL2;;chr19:37341673..37341699,-!p3@ZNF790!0.47!3.99!ZNF790;;chr3:71630690..71630750,-!p11@FOXP1!0.47!3.72!FOXP1;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FF:11902-125F3: Difference between revisions

From FANTOM5_SSTAR

Revision as of 16:56, 29 June 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0