FFCP PHASE1:Hg19::chr14:22409331..22409334,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=|TSSclassifier=S|UniProt=A2NVQ0|association_with_transcript=5bp_to_uc001wck.2,uc010ajb.1_5end|coexpression_cluster_id=C18|description=CAGE_peak_3_at_uc001wck.2_5end,CAGE_peak_4_at_uc010ajb.1_5end|id=chr14:22409331..22409334,+|ontology_enrichment_celltype=CL:0000791!4.55e-42!18;CL:0000789!4.55e-42!18;CL:0002420!4.55e-42!18;CL:0002419!4.55e-42!18;CL:0000790!4.55e-42!18;CL:0000084!2.31e-29!25;CL:0000827!2.31e-29!25;CL:0000625!3.74e-29!11;CL:0000624!3.69e-17!6;CL:0000838!2.19e-16!52;CL:0000542!5.25e-16!53;CL:0000051!5.25e-16!53;CL:0000898!1.98e-13!3;CL:0000815!1.47e-09!2;CL:0000792!1.47e-09!2;CL:0002677!1.47e-09!2;CL:0002087!1.09e-07!119;CL:0000738!1.38e-07!140|ontology_enrichment_celltype_v019=CL:0000898;6.86e-29;3!CL:0000791;4.03e-25;18!CL:0000789;4.03e-25;18!CL:0002419;4.03e-25;18!CL:0000815;7.17e-20;2!CL:0000792;7.17e-20;2!CL:0002677;7.17e-20;2!CL:0000084;6.52e-18;25!CL:0000624;8.91e-15;6!CL:0000625;3.89e-14;11!CL:0000895;8.20e-11;1|ontology_enrichment_celltype_v019_2=CL:0000898,1.63e-28,3;CL:0000791,4.87e-25,18;CL:0000789,4.87e-25,18;CL:0002420,4.87e-25,18;CL:0002419,4.87e-25,18;CL:0000790,4.87e-25,18;CL:0000815,1.06e-19,2;CL:0000792,1.06e-19,2;CL:0002677,1.06e-19,2;CL:0000084,7.45e-18,25;CL:0000827,7.45e-18,25;CL:0000624,1.37e-14,6;CL:0000625,3.40e-14,11;CL:0000810,1.33e-10,1;CL:0000895,1.33e-10,1;CL:0002436,1.33e-10,1;CL:0002427,1.33e-10,1;CL:0002428,1.33e-10,1;CL:0002429,1.33e-10,1;CL:0002433,1.33e-10,1;CL:0002431,1.33e-10,1;CL:0002432,1.33e-10,1;CL:0000838,3.19e-08,52;CL:0000542,4.71e-08,53;CL:0000051,4.71e-08,53|ontology_enrichment_development_v019=CL:0000790;4.03e-25;18!CL:0002427;8.20e-11;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000178!7.66e-12!15;UBERON:0000179!7.66e-12!15;UBERON:0000463!7.66e-12!15;UBERON:0002370!1.05e-09!4;UBERON:0005058!1.05e-09!4;UBERON:0009113!1.05e-09!4;UBERON:0003295!1.05e-09!4;UBERON:0005562!1.05e-09!4;UBERON:0004177!3.01e-09!7|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0.647787332037959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786839080455332,0,0.616804496998528,1.5046784585161,1.30368906653436,1.89379122293893,1.94826728407911,3.00808233589969,1.47302953737419,2.43687284041983,1.35401931882508,2.0494611156108,1.43065282315866,0.657751618414705,1.10540007114339,1.73881851441031,0.889719378972363,1.33770414044857,1.04535523804977,1.58633079776593,1.14966148080576,1.71813722741315,0.759059076058509,1.91139248594458,0.651083453856419,0.950452044448374,1.05402583354441,0.76791966692651,2.49861453104692,0.947109008176067,1.64225599384209,0,0,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0.476463550915578,0,0.648473311192717,0.540031437238115,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839655827868079,0.434523000071005,0,0,0,0,0,0.202056159043763,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p3@uc001wck.2,p4@uc010ajb.1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt=A2NVQ0 | |||
|association_with_transcript=5bp_to_uc001wck.2,uc010ajb.1_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_3_at_uc001wck.2_5end,CAGE_peak_4_at_uc010ajb.1_5end | |||
|id=chr14:22409331..22409334,+ | |||
|ontology_enrichment_celltype=CL:0000791!4.55e-42!18;CL:0000789!4.55e-42!18;CL:0002420!4.55e-42!18;CL:0002419!4.55e-42!18;CL:0000790!4.55e-42!18;CL:0000084!2.31e-29!25;CL:0000827!2.31e-29!25;CL:0000625!3.74e-29!11;CL:0000624!3.69e-17!6;CL:0000838!2.19e-16!52;CL:0000542!5.25e-16!53;CL:0000051!5.25e-16!53;CL:0000898!1.98e-13!3;CL:0000815!1.47e-09!2;CL:0000792!1.47e-09!2;CL:0002677!1.47e-09!2;CL:0002087!1.09e-07!119;CL:0000738!1.38e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000898;6.86e-29;3!CL:0000791;4.03e-25;18!CL:0000789;4.03e-25;18!CL:0002419;4.03e-25;18!CL:0000815;7.17e-20;2!CL:0000792;7.17e-20;2!CL:0002677;7.17e-20;2!CL:0000084;6.52e-18;25!CL:0000624;8.91e-15;6!CL:0000625;3.89e-14;11!CL:0000895;8.20e-11;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000898,1.63e-28,3;CL:0000791,4.87e-25,18;CL:0000789,4.87e-25,18;CL:0002420,4.87e-25,18;CL:0002419,4.87e-25,18;CL:0000790,4.87e-25,18;CL:0000815,1.06e-19,2;CL:0000792,1.06e-19,2;CL:0002677,1.06e-19,2;CL:0000084,7.45e-18,25;CL:0000827,7.45e-18,25;CL:0000624,1.37e-14,6;CL:0000625,3.40e-14,11;CL:0000810,1.33e-10,1;CL:0000895,1.33e-10,1;CL:0002436,1.33e-10,1;CL:0002427,1.33e-10,1;CL:0002428,1.33e-10,1;CL:0002429,1.33e-10,1;CL:0002433,1.33e-10,1;CL:0002431,1.33e-10,1;CL:0002432,1.33e-10,1;CL:0000838,3.19e-08,52;CL:0000542,4.71e-08,53;CL:0000051,4.71e-08,53 | |||
|ontology_enrichment_development_v019=CL:0000790;4.03e-25;18!CL:0002427;8.20e-11;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!7.66e-12!15;UBERON:0000179!7.66e-12!15;UBERON:0000463!7.66e-12!15;UBERON:0002370!1.05e-09!4;UBERON:0005058!1.05e-09!4;UBERON:0009113!1.05e-09!4;UBERON:0003295!1.05e-09!4;UBERON:0005562!1.05e-09!4;UBERON:0004177!3.01e-09!7 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0.647787332037959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786839080455332,0,0.616804496998528,1.5046784585161,1.30368906653436,1.89379122293893,1.94826728407911,3.00808233589969,1.47302953737419,2.43687284041983,1.35401931882508,2.0494611156108,1.43065282315866,0.657751618414705,1.10540007114339,1.73881851441031,0.889719378972363,1.33770414044857,1.04535523804977,1.58633079776593,1.14966148080576,1.71813722741315,0.759059076058509,1.91139248594458,0.651083453856419,0.950452044448374,1.05402583354441,0.76791966692651,2.49861453104692,0.947109008176067,1.64225599384209,0,0,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0.476463550915578,0,0.648473311192717,0.540031437238115,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839655827868079,0.434523000071005,0,0,0,0,0,0.202056159043763,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@uc001wck.2,p4@uc010ajb.1 | |||
}} |
Revision as of 03:48, 11 September 2013
Short description: | p3@uc001wck.2, p4@uc010ajb.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_uc001wck.2_5end, CAGE_peak_4_at_uc010ajb.1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 5bp_to_uc001wck.2, uc010ajb.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
naive T cell | 1.63e-28 | 3 |
mature alpha-beta T cell | 4.87e-25 | 18 |
alpha-beta T cell | 4.87e-25 | 18 |
immature T cell | 4.87e-25 | 18 |
mature T cell | 4.87e-25 | 18 |
immature alpha-beta T cell | 4.87e-25 | 18 |
regulatory T cell | 1.06e-19 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.06e-19 | 2 |
naive regulatory T cell | 1.06e-19 | 2 |
T cell | 7.45e-18 | 25 |
pro-T cell | 7.45e-18 | 25 |
CD4-positive, alpha-beta T cell | 1.37e-14 | 6 |
CD8-positive, alpha-beta T cell | 3.40e-14 | 11 |
CD4-positive, alpha-beta thymocyte | 1.33e-10 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 1.33e-10 | 1 |
mature CD4 single-positive thymocyte | 1.33e-10 | 1 |
resting double-positive thymocyte | 1.33e-10 | 1 |
double-positive blast | 1.33e-10 | 1 |
CD69-positive double-positive thymocyte | 1.33e-10 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 1.33e-10 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 1.33e-10 | 1 |
CD24-positive, CD4 single-positive thymocyte | 1.33e-10 | 1 |
lymphoid lineage restricted progenitor cell | 3.19e-08 | 52 |
lymphocyte | 4.71e-08 | 53 |
common lymphoid progenitor | 4.71e-08 | 53 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.