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UBERON:0000061

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Name:anatomical structure
Namespace:FANTOM
Definition:"Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome." [CARO:0000003]
Xrefs:
links:

AAO:0010825
AEO:0000003
BILA:0000003
CARO:0000003
EHDAA2:0003003
FBbt:00007001
FMA:67135
GAID:781
HAO:0000003
MA:0003000
MESH:A.13
SCTID:362889002
TAO:0000037
TGMA:0001823
XAO:0003000

ZFA:0000037
Synonyms: "biological structure" EXACT []
Alt_id: UBERON:CARO_0000003-CARO_0000024-FBbt_00000001-FBbt_00007001-FMA_67135-FMA_67498-WBbt_0003760-WBbt_0007833-XAO_0003000-XAO_0003041-ZFA_0000037-ZFA_0000496-ZFA_0001094
Subset: upper_level

Ontology association

Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.



link to ontology dataset


data

Parents

is_a:UBERON:0000465(material anatomical entity)



Children

is a:UBERON:0000470 (cell part),UBERON:0000476 (acellular anatomical structure),UBERON:0000478 (extraembryonic structure),UBERON:0000480 (anatomical group),UBERON:0002050 (embryonic structure),UBERON:0003102 (surface structure),UBERON:0004119 (endoderm-derived structure),UBERON:0004120 (mesoderm-derived structure),UBERON:0004121 (ectoderm-derived structure),UBERON:0005090 (muscle structure),UBERON:0006554 (urinary system structure),UBERON:0007651 (anatomical junction),UBERON:0009856 (sac),UBERON:0010000 (multicellular anatomical structure),UBERON:0010314 (structure with developmental contribution from neural crest),UBERON:0010317 (germ layer / neural crest derived structure),UBERON:0011585 (cell condensation),UBERON:0014402 (sex-specific anatomical structure),UBERON:0015212 (lateral structure)

Ontology Tree: Loaded from BioPortal


FF samples

It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)
  • 10000-101A1 (Clontech Human Universal Reference Total RNA, pool1)
  • 10001-101A3 (Clontech Mouse Universal Reference Total RNA, pool1)
  • 10002-101A5 (SABiosciences XpressRef Human Universal Total RNA, pool1)
  • 10003-101A7 (SABiosciences XpressRef Mouse Universal Total RNA, pool1)
  • 10004-101A9 (chicken embryo whole body, day10 (HH37))
  • 10006-101B2 (Universal RNA - Dog Normal Tissues Biochain, pool1)
  • 10007-101B4 (Universal RNA - Human Normal Tissues Biochain, pool1)
  • 10008-101B6 (Universal RNA - Mouse Normal Tissues Biochain, pool1)
  • 10009-101B8 (Universal RNA - Rat Normal Tissues Biochain, pool1)
  • 10010-101C1 (adipose tissue, adult, pool1)
  • ... further results
Mouse (Mus musculus)
  • 10000-101A1 (Clontech Human Universal Reference Total RNA, pool1)
  • 10001-101A3 (Clontech Mouse Universal Reference Total RNA, pool1)
  • 10002-101A5 (SABiosciences XpressRef Human Universal Total RNA, pool1)
  • 10003-101A7 (SABiosciences XpressRef Mouse Universal Total RNA, pool1)
  • 10004-101A9 (chicken embryo whole body, day10 (HH37))
  • 10006-101B2 (Universal RNA - Dog Normal Tissues Biochain, pool1)
  • 10007-101B4 (Universal RNA - Human Normal Tissues Biochain, pool1)
  • 10008-101B6 (Universal RNA - Mouse Normal Tissues Biochain, pool1)
  • 10009-101B8 (Universal RNA - Rat Normal Tissues Biochain, pool1)
  • 10010-101C1 (adipose tissue, adult, pool1)
  • ... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term
TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000061 (anatomical structure), sorted by p-values
Analyst: Hideya Kawaji



link to source dataset
human : data

mouse : data

No analysis results