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UBERON:0000078

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Name:mixed ectoderm/mesoderm/endoderm-derived structure
Namespace:FANTOM
Definition:"An anatomical structure that develops from the ectoderm, mesoderm and endoderm." [UBERON:cjm]
Comments:Grouping term for query purposes. Notes that the developmental relationships are being refined such that most structures should develop in whole from at most one layer, but may have contributions from multiple
Subset: grouping_class

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0004121(ectoderm-derived structure)
develops_from:UBERON:0000924(ectoderm),UBERON:0000925(endoderm),UBERON:0000926(mesoderm),UBERON:0000924(ectoderm),UBERON:0000925(endoderm),UBERON:0000926(mesoderm)



Children

is a:UBERON:0002244 (premaxilla),UBERON:0005620 (primary palate),UBERON:0005705 (primary palate mesenchyme),UBERON:0011628 (early premaxilla)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11250-116E8 (Fibroblast - Pulmonary Artery, donor1)
  • 11288-117A1 (Smooth Muscle Cells - Pulmonary Artery, donor1)
  • 11365-117I6 (Smooth Muscle Cells - Pulmonary Artery, donor2)
  • 11437-118H6 (Smooth Muscle Cells - Pulmonary Artery, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000078 (mixed ectoderm/mesoderm/endoderm-derived structure), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr8:90366581..90366594,-#_1de47cf55311a5b003d958580c44f0c1p@chr8:90366581..90366594, -
1.55e-98FFCP PHASE2:Hg19::chr8:90366581..90366594,-#_1de47cf55311a5b003d958580c44f0c1p@chr8:90366581..90366594, -
1.55e-98FFCP PHASE2:Hg19::chr6:21648948..21648949,+#_1de47cf55311a5b003d958580c44f0c1p@chr6:21648948..21648949, +
1.55e-98FFCP PHASE2:Hg19::chr4:70707713..70707716,-#_1de47cf55311a5b003d958580c44f0c1p@chr4:70707713..70707716, -
1.55e-98FFCP PHASE1:Hg19::chr6:21648948..21648949,+#_1de47cf55311a5b003d958580c44f0c1p@chr6:21648948..21648949, +
1.55e-98FFCP PHASE1:Hg19::chr4:70707713..70707716,-#_1de47cf55311a5b003d958580c44f0c1p@chr4:70707713..70707716, -
2.74e-50FFCP PHASE1:Hg19::chr4:70707556..70707558,-#_315302c9ecde85b8b4c24c829951ebbep@chr4:70707556..70707558, -
2.74e-50FFCP PHASE2:Hg19::chr4:70707556..70707558,-#_315302c9ecde85b8b4c24c829951ebbep@chr4:70707556..70707558, -
4.52e-50FFCP PHASE2:Hg19::chr3:158928407..158928414,+#_fc75f50eea503431c035ba31c0fe8671p@chr3:158928407..158928414, +
4.52e-50FFCP PHASE2:Hg19::chrX:23072856..23072859,-#_fc75f50eea503431c035ba31c0fe8671p@chrX:23072856..23072859, -
4.52e-50FFCP PHASE1:Hg19::chrX:23072856..23072859,-#_fc75f50eea503431c035ba31c0fe8671p@chrX:23072856..23072859, -
4.52e-50FFCP PHASE1:Hg19::chr10:90749902..90749913,+#_fc75f50eea503431c035ba31c0fe8671p14@FAS
4.52e-50FFCP PHASE2:Hg19::chr6:21666284..21666297,+#_fc75f50eea503431c035ba31c0fe8671p26@LINC00340
4.52e-50FFCP PHASE1:Hg19::chr8:120651826..120651840,-#_fc75f50eea503431c035ba31c0fe8671p@chr8:120651826..120651840, -
4.52e-50FFCP PHASE1:Hg19::chr3:158928407..158928414,+#_fc75f50eea503431c035ba31c0fe8671p@chr3:158928407..158928414, +
4.52e-50FFCP PHASE2:Hg19::chr8:120651826..120651840,-#_fc75f50eea503431c035ba31c0fe8671p@chr8:120651826..120651840, -
4.52e-50FFCP PHASE2:Hg19::chr10:90749902..90749913,+#_fc75f50eea503431c035ba31c0fe8671p14@FAS
4.52e-50FFCP PHASE1:Hg19::chr6:21666284..21666297,+#_fc75f50eea503431c035ba31c0fe8671p26@LINC00340
3.61e-34FFCP PHASE1:Hg19::chr4:70707608..70707615,-#_cb524191e2c9f8c86fa0116d0645508cp@chr4:70707608..70707615, -
3.61e-34FFCP PHASE2:Hg19::chr4:70707608..70707615,-#_cb524191e2c9f8c86fa0116d0645508cp@chr4:70707608..70707615, -
5.04e-34FFCP PHASE1:Hg19::chr4:70690584..70690589,+#_4691d0c882be393e3a32d3be9f8a5d45p@chr4:70690584..70690589, +
5.04e-34FFCP PHASE1:Hg19::chr3:156258392..156258395,-#_4691d0c882be393e3a32d3be9f8a5d45p@chr3:156258392..156258395, -
5.04e-34FFCP PHASE1:Hg19::chr11:131614903..131614910,-#_4691d0c882be393e3a32d3be9f8a5d45p@chr11:131614903..131614910, -
5.04e-34FFCP PHASE1:Hg19::chr17:76824975..76824978,-#_4691d0c882be393e3a32d3be9f8a5d45p@chr17:76824975..76824978, -
5.04e-34FFCP PHASE2:Hg19::chr4:70690584..70690589,+#_4691d0c882be393e3a32d3be9f8a5d45p@chr4:70690584..70690589, +
5.04e-34FFCP PHASE2:Hg19::chr3:156258392..156258395,-#_4691d0c882be393e3a32d3be9f8a5d45p@chr3:156258392..156258395, -
5.04e-34FFCP PHASE2:Hg19::chr11:131614903..131614910,-#_4691d0c882be393e3a32d3be9f8a5d45p@chr11:131614903..131614910, -
5.04e-34FFCP PHASE2:Hg19::chr17:76824975..76824978,-#_4691d0c882be393e3a32d3be9f8a5d45p@chr17:76824975..76824978, -
7.05e-34FFCP PHASE2:Hg19::chr20:48184812..48184818,-#_54aaf8aaab320fdea4d4c6b5dff647cep13@PTGIS
7.05e-34FFCP PHASE2:Hg19::chr1:176668544..176668553,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr1:176668544..176668553, +
7.05e-34FFCP PHASE2:Hg19::chr4:24645959..24645967,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr4:24645959..24645967, +
7.05e-34FFCP PHASE2:Hg19::chr11:94587086..94587097,+#_54aaf8aaab320fdea4d4c6b5dff647cep19@AMOTL1
7.05e-34FFCP PHASE1:Hg19::chr4:38147484..38147500,-#_54aaf8aaab320fdea4d4c6b5dff647cep@chr4:38147484..38147500, -
7.05e-34FFCP PHASE1:Hg19::chr20:48184812..48184818,-#_54aaf8aaab320fdea4d4c6b5dff647cep13@PTGIS
7.05e-34FFCP PHASE1:Hg19::chr6:119590894..119590904,-#_54aaf8aaab320fdea4d4c6b5dff647cep1@ENST00000406333
7.05e-34FFCP PHASE1:Hg19::chr4:24645959..24645967,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr4:24645959..24645967, +
7.05e-34FFCP PHASE1:Hg19::chr9:16059821..16059828,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr9:16059821..16059828, +
7.05e-34FFCP PHASE2:Hg19::chr19:54466179..54466202,+#_54aaf8aaab320fdea4d4c6b5dff647cep1@CACNG8
7.05e-34FFCP PHASE2:Hg19::chr6:119590894..119590904,-#_54aaf8aaab320fdea4d4c6b5dff647cep1@ENST00000406333
7.05e-34FFCP PHASE2:Hg19::chr13:38136724..38136726,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr13:38136724..38136726, +
7.05e-34FFCP PHASE2:Hg19::chr7:18834859..18834879,-#_54aaf8aaab320fdea4d4c6b5dff647cep@chr7:18834859..18834879, -
7.05e-34FFCP PHASE1:Hg19::chr7:18834859..18834879,-#_54aaf8aaab320fdea4d4c6b5dff647cep@chr7:18834859..18834879, -
7.05e-34FFCP PHASE1:Hg19::chr19:54466179..54466202,+#_54aaf8aaab320fdea4d4c6b5dff647cep1@CACNG8
7.05e-34FFCP PHASE2:Hg19::chr9:16059821..16059828,+#_54aaf8aaab320fdea4d4c6b5dff647ce+, p@chr9:16059821..16059828
7.05e-34FFCP PHASE1:Hg19::chr1:93043102..93043113,-#_54aaf8aaab320fdea4d4c6b5dff647cep@chr1:93043102..93043113, -
7.05e-34FFCP PHASE1:Hg19::chr13:38136724..38136726,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr13:38136724..38136726, +
7.05e-34FFCP PHASE1:Hg19::chr11:94587086..94587097,+#_54aaf8aaab320fdea4d4c6b5dff647cep19@AMOTL1
7.05e-34FFCP PHASE2:Hg19::chr8:134047162..134047169,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr8:134047162..134047169, +
7.05e-34FFCP PHASE2:Hg19::chr7:22687639..22687644,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr7:22687639..22687644, +
7.05e-34FFCP PHASE1:Hg19::chrX:140904171..140904173,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chrX:140904171..140904173, +
7.05e-34FFCP PHASE1:Hg19::chr8:134047162..134047169,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr8:134047162..134047169, +
7.05e-34FFCP PHASE2:Hg19::chrX:140904171..140904173,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chrX:140904171..140904173, +
7.05e-34FFCP PHASE2:Hg19::chr1:93043102..93043113,-#_54aaf8aaab320fdea4d4c6b5dff647cep@chr1:93043102..93043113, -
7.05e-34FFCP PHASE1:Hg19::chr1:176668544..176668553,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr1:176668544..176668553, +
7.05e-34FFCP PHASE1:Hg19::chr7:22687639..22687644,+#_54aaf8aaab320fdea4d4c6b5dff647ce+, p@chr7:22687639..22687644
7.05e-34FFCP PHASE2:Hg19::chr4:38147484..38147500,-#_54aaf8aaab320fdea4d4c6b5dff647cep@chr4:38147484..38147500, -
5.56e-26FFCP PHASE1:Hg19::chr9:33797893..33797903,+#_e8a723433cd6ce4956dc18da9f0ff59fp@chr9:33797893..33797903, +
5.56e-26FFCP PHASE2:Hg19::chr9:33797893..33797903,+#_e8a723433cd6ce4956dc18da9f0ff59fp@chr9:33797893..33797903, +
7.14e-26FFCP PHASE2:Hg19::chr4:891819..891820,-#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr4:891819..891820, -
7.14e-26FFCP PHASE2:Hg19::chr6:34208414..34208429,+#_730d85a5e8cb02ecf9b97b29e31ddf89p16@HMGA1
7.14e-26FFCP PHASE2:Hg19::chr18:65175930..65175941,+#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr18:65175930..65175941, +
7.14e-26FFCP PHASE2:Hg19::chr17:61995172..61995199,-#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr17:61995172..61995199, -
7.14e-26FFCP PHASE1:Hg19::chr4:891819..891820,-#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr4:891819..891820, -
7.14e-26FFCP PHASE2:Hg19::chr19:15509437..15509442,-#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr19:15509437..15509442, -
7.14e-26FFCP PHASE2:Hg19::chr19:10218330..10218339,+#_730d85a5e8cb02ecf9b97b29e31ddf89p1@SNORD105
7.14e-26FFCP PHASE1:Hg19::chr17:61995172..61995199,-#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr17:61995172..61995199, -
7.14e-26FFCP PHASE2:Hg19::chr8:123580995..123581003,-#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr8:123580995..123581003, -
7.14e-26FFCP PHASE1:Hg19::chr18:65175930..65175941,+#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr18:65175930..65175941, +
7.14e-26FFCP PHASE2:Hg19::chr2:73302288..73302299,-#_730d85a5e8cb02ecf9b97b29e31ddf89p13@RAB11FIP5
7.14e-26FFCP PHASE1:Hg19::chr6:34208414..34208429,+#_730d85a5e8cb02ecf9b97b29e31ddf89p16@HMGA1
7.14e-26FFCP PHASE1:Hg19::chr10:103040652..103040655,+#_730d85a5e8cb02ecf9b97b29e31ddf89p1@ENST00000492301
7.14e-26FFCP PHASE1:Hg19::chr8:123580995..123581003,-#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr8:123580995..123581003, -
7.14e-26FFCP PHASE1:Hg19::chr19:15509437..15509442,-#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr19:15509437..15509442, -
7.14e-26FFCP PHASE1:Hg19::chr2:73302288..73302299,-#_730d85a5e8cb02ecf9b97b29e31ddf89p13@RAB11FIP5
7.14e-26FFCP PHASE1:Hg19::chr19:10218330..10218339,+#_730d85a5e8cb02ecf9b97b29e31ddf89p1@SNORD105
7.14e-26FFCP PHASE2:Hg19::chr10:103040652..103040655,+#_730d85a5e8cb02ecf9b97b29e31ddf89p1@ENST00000492301
9.18e-26FFCP PHASE2:Hg19::chr1:185703364..185703371,-#_c5f7f709704ba344e2f679ac9265a509p@chr1:185703364..185703371, -
9.18e-26FFCP PHASE2:Hg19::chr11:13484984..13484992,+#_c5f7f709704ba344e2f679ac9265a509p5@BC031228
9.18e-26FFCP PHASE1:Hg19::chr9:33797981..33798005,-#_c5f7f709704ba344e2f679ac9265a509p@chr9:33797981..33798005, -
9.18e-26FFCP PHASE1:Hg19::chr5:146890197..146890224,-#_c5f7f709704ba344e2f679ac9265a509p@chr5:146890197..146890224, -
9.18e-26FFCP PHASE1:Hg19::chr4:114257151..114257163,+#_c5f7f709704ba344e2f679ac9265a509p28@ANK2
9.18e-26FFCP PHASE2:Hg19::chr9:33797981..33798005,-#_c5f7f709704ba344e2f679ac9265a509p@chr9:33797981..33798005, -
9.18e-26FFCP PHASE1:Hg19::chr2:84316409..84316414,-#_c5f7f709704ba344e2f679ac9265a509p@chr2:84316409..84316414, -
9.18e-26FFCP PHASE2:Hg19::chr8:37374492..37374499,-#_c5f7f709704ba344e2f679ac9265a509p1@ENST00000521989
9.18e-26FFCP PHASE1:Hg19::chr8:37374492..37374499,-#_c5f7f709704ba344e2f679ac9265a509p1@ENST00000521989
9.18e-26FFCP PHASE2:Hg19::chr2:238116338..238116342,-#_c5f7f709704ba344e2f679ac9265a509p@chr2:238116338..238116342, -
9.18e-26FFCP PHASE2:Hg19::chr2:84316409..84316414,-#_c5f7f709704ba344e2f679ac9265a509p@chr2:84316409..84316414, -
9.18e-26FFCP PHASE1:Hg19::chr8:94712896..94712909,+#_c5f7f709704ba344e2f679ac9265a509p10@FAM92A1
9.18e-26FFCP PHASE2:Hg19::chr6:148593641..148593643,+#_c5f7f709704ba344e2f679ac9265a509p@chr6:148593641..148593643, +
9.18e-26FFCP PHASE2:Hg19::chr8:94712896..94712909,+#_c5f7f709704ba344e2f679ac9265a509p10@FAM92A1
9.18e-26FFCP PHASE1:Hg19::chr2:238116338..238116342,-#_c5f7f709704ba344e2f679ac9265a509p@chr2:238116338..238116342, -
9.18e-26FFCP PHASE1:Hg19::chr15:71371688..71371691,-#_c5f7f709704ba344e2f679ac9265a509p@chr15:71371688..71371691, -
9.18e-26FFCP PHASE1:Hg19::chr6:148593641..148593643,+#_c5f7f709704ba344e2f679ac9265a509p@chr6:148593641..148593643, +
9.18e-26FFCP PHASE2:Hg19::chr15:71371688..71371691,-#_c5f7f709704ba344e2f679ac9265a509p@chr15:71371688..71371691, -
9.18e-26FFCP PHASE2:Hg19::chr4:74392579..74392583,+#_c5f7f709704ba344e2f679ac9265a509p@chr4:74392579..74392583, +
9.18e-26FFCP PHASE2:Hg19::chr5:146890197..146890224,-#_c5f7f709704ba344e2f679ac9265a509p@chr5:146890197..146890224, -
9.18e-26FFCP PHASE2:Hg19::chr3:11675748..11675759,-#_c5f7f709704ba344e2f679ac9265a509p@chr3:11675748..11675759, -
9.18e-26FFCP PHASE2:Hg19::chr19:681941..681952,+#_c5f7f709704ba344e2f679ac9265a509+, p@chr19:681941..681952
9.18e-26FFCP PHASE1:Hg19::chr4:74392579..74392583,+#_c5f7f709704ba344e2f679ac9265a509p@chr4:74392579..74392583, +
9.18e-26FFCP PHASE1:Hg19::chr11:13484984..13484992,+#_c5f7f709704ba344e2f679ac9265a509p5@BC031228