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UBERON:0000925

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Name:endoderm
Namespace:FANTOM
Definition:"Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut." [Wikipedia:Endoderm]
Xrefs:
links:

AAO:0000139
BILA:0000038
BTO:0000800
EFO:0002545
EHDAA2:0000436
EV:0100005
FBbt:00000125
FMA:69071
GAID:1305
[ Endoderm2.png Endoderm2.png]
[ 200px-Gray10.png 200px-Gray10.png]
MAT:0000175
MESH:A.16.254.425.407
MIAA:0000175
ncithesaurus:Endoderm
SCTID:362855003
TAO:0000017
VHOG:0000154
XAO:0000090

ZFA:0000017
Synonyms: "entoderm" RELATED []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FBbt_00000125-FMA_69071-MIAA_0000175-XAO_0000090-ZFA_0000017
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000923(germ layer)
develops_from:UBERON:0006595(presumptive endoderm)



Children

is a:UBERON:0009550 (endoderm of foregut-midgut junction)
develops from:UBERON:0000077 (mixed endoderm/mesoderm-derived structure),UBERON:0000078 (mixed ectoderm/mesoderm/endoderm-derived structure),UBERON:0001040 (yolk sac),UBERON:0003258 (endoderm of foregut),UBERON:0003921 (pancreas primordium),UBERON:0004119 (endoderm-derived structure),UBERON:0004185 (endodermal part of digestive tract),UBERON:0004340 (allantois),UBERON:0005911 (endo-epithelium),UBERON:0007026 (primitive gut),UBERON:0007690 (early pharyngeal endoderm),UBERON:0009722 (entire pharyngeal arch endoderm)
part of:CL:0000223 (endodermal cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000925 (endoderm), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.25e-39FFCP PHASE1:Hg19::chr14:38064429..38064486,-#_8f850b2c5f260e580f9443280c4c2989p1@FOXA1
5.25e-39FFCP PHASE2:Hg19::chr14:38064429..38064486,-#_8f850b2c5f260e580f9443280c4c2989p1@FOXA1
5.41e-39FFCP PHASE1:Hg19::chr16:68269971..68270059,-#_815753a43353b6dea6a4af28710f8e95p1@ESRP2
5.41e-39FFCP PHASE2:Hg19::chr16:68269971..68270059,-#_815753a43353b6dea6a4af28710f8e95p1@ESRP2
4.26e-36FFCP PHASE2:Hg19::chr5:134369879..134369898,-#_5c5d12aa5e63834abdb7e110e73e16a4p2@PITX1
4.26e-36FFCP PHASE1:Hg19::chr5:134369879..134369898,-#_5c5d12aa5e63834abdb7e110e73e16a4p2@PITX1
7.78e-36FFCP PHASE1:Hg19::chr20:62168672..62168713,-#_88eb1d23e7de35184a9ebea4cc114f7ap1@PTK6
7.78e-36FFCP PHASE2:Hg19::chr20:62168672..62168713,-#_88eb1d23e7de35184a9ebea4cc114f7ap1@PTK6
8.3e-36FFCP PHASE2:Hg19::chr1:209825762..209825779,-#_5d0507e39f3fcfdc97814161d1a091cbp1@LAMB3
8.3e-36FFCP PHASE1:Hg19::chr1:209825762..209825779,-#_5d0507e39f3fcfdc97814161d1a091cbp1@LAMB3
1.75e-35FFCP PHASE2:Hg19::chr11:394196..394258,+#_b4db7b6c7cd14ae0968419f6164d0589p1@PKP3
1.75e-35FFCP PHASE1:Hg19::chr11:394196..394258,+#_b4db7b6c7cd14ae0968419f6164d0589p1@PKP3
2.07e-35FFCP PHASE1:Hg19::chr19:42212526..42212575,+#_22341f648422be51d5b8cda3d21ba0f0p1@CEACAM5
2.07e-35FFCP PHASE2:Hg19::chr19:42212526..42212575,+#_22341f648422be51d5b8cda3d21ba0f0p1@CEACAM5
3.2e-35FFCP PHASE1:Hg19::chr14:65409452..65409479,-#_732c696f4944951f462af15906858718p1@GPX2
3.2e-35FFCP PHASE2:Hg19::chr14:65409452..65409479,-#_732c696f4944951f462af15906858718p1@GPX2
3.67e-35FFCP PHASE1:Hg19::chr1:26503974..26504025,+#_96a378def9122d7282cba0c77ef0baafp1@CNKSR1
3.67e-35FFCP PHASE2:Hg19::chr1:26503974..26504025,+#_96a378def9122d7282cba0c77ef0baafp1@CNKSR1
2.73e-34FFCP PHASE1:Hg19::chr16:68260798..68260800,-#_1add5516461e91cdf7f5a277cb87ec2cp@chr16:68260798..68260800, -
2.73e-34FFCP PHASE2:Hg19::chr16:68260798..68260800,-#_1add5516461e91cdf7f5a277cb87ec2cp@chr16:68260798..68260800, -
3.29e-34FFCP PHASE1:Hg19::chr18:47721315..47721430,-#_3f86abb61d5303d1adde02e83595d73fp1@MYO5B
3.29e-34FFCP PHASE2:Hg19::chr18:47721315..47721430,-#_3f86abb61d5303d1adde02e83595d73fp1@MYO5B
3.5e-34FFCP PHASE2:Hg19::chr17:7164410..7164457,-#_e093c646a3cefc69c2b2f11a5991e4b3p3@CLDN7
3.5e-34FFCP PHASE1:Hg19::chr17:7164410..7164457,-#_e093c646a3cefc69c2b2f11a5991e4b3p3@CLDN7
1.73e-33FFCP PHASE1:Hg19::chr11:32851450..32851485,+#_030674465be08e31da33e8312f0abf5ap1@PRRG4
1.73e-33FFCP PHASE2:Hg19::chr11:32851450..32851485,+#_030674465be08e31da33e8312f0abf5ap1@PRRG4
3.14e-33FFCP PHASE2:Hg19::chr18:61144160..61144214,+#_802963277db5e0d6615b3fb4dde5920fp1@SERPINB5
3.14e-33FFCP PHASE1:Hg19::chr18:61144160..61144214,+#_802963277db5e0d6615b3fb4dde5920fp1@SERPINB5
3.49e-33FFCP PHASE1:Hg19::chr14:65409484..65409495,-#_7d55ecaa5106dbde87fcc743f48829c5p2@GPX2
3.49e-33FFCP PHASE2:Hg19::chr14:65409484..65409495,-#_7d55ecaa5106dbde87fcc743f48829c5p2@GPX2
4.5e-33FFCP PHASE1:Hg19::chr8:82644741..82644791,+#_75d6f14ffc6a5c2263530b68b1ff49acp2@CHMP4C
4.5e-33FFCP PHASE2:Hg19::chr8:82644741..82644791,+#_75d6f14ffc6a5c2263530b68b1ff49acp2@CHMP4C
1.62e-32FFCP PHASE1:Hg19::chr17:39942220..39942242,-#_56e2b99a85950dc012d0b4e49e5600b7p2@JUP
1.62e-32FFCP PHASE2:Hg19::chr17:39942220..39942242,-#_56e2b99a85950dc012d0b4e49e5600b7p2@JUP
5.24e-32FFCP PHASE2:Hg19::chr1:201979743..201979762,+#_74b7debc2b47a058ee2c997af8a3d958p1@ELF3
5.24e-32FFCP PHASE1:Hg19::chr1:201979743..201979762,+#_74b7debc2b47a058ee2c997af8a3d958p1@ELF3
1.23e-31FFCP PHASE1:Hg19::chr1:207206020..207206050,-#_9c0a0d07e2355e5ec0362f962cbc795dp1@C1orf116
1.23e-31FFCP PHASE2:Hg19::chr1:207206020..207206050,-#_9c0a0d07e2355e5ec0362f962cbc795dp1@C1orf116
1.54e-31FFCP PHASE2:Hg19::chr7:16844611..16844628,-#_2e0dacd63174db854d814d10d65298fep1@AGR2
1.54e-31FFCP PHASE1:Hg19::chr7:16844611..16844628,-#_2e0dacd63174db854d814d10d65298fep1@AGR2
1.75e-31FFCP PHASE2:Hg19::chr1:201368430..201368460,-#_3dcbe456c3178a50f50f1a172dc722cfp1@LAD1
1.75e-31FFCP PHASE1:Hg19::chr1:201368430..201368460,-#_3dcbe456c3178a50f50f1a172dc722cfp1@LAD1
1.77e-31FFCP PHASE2:Hg19::chr19:751122..751139,+#_e81929b59a7552bde6a90c29ed6c882bp1@C19orf21
1.77e-31FFCP PHASE1:Hg19::chr19:751122..751139,+#_e81929b59a7552bde6a90c29ed6c882bp1@C19orf21
1.83e-31FFCP PHASE1:Hg19::chrX:48916506..48916557,+#_3c82ed53152c20d1b4e8dc52abf965e1p1@CCDC120
1.83e-31FFCP PHASE2:Hg19::chrX:48916506..48916557,+#_3c82ed53152c20d1b4e8dc52abf965e1p1@CCDC120
2.28e-31FFCP PHASE2:Hg19::chr17:38657867..38657882,-#_83af40a16f3c1a95ae7224e6d4904d7ap1@TNS4
2.28e-31FFCP PHASE1:Hg19::chr17:38657867..38657882,-#_83af40a16f3c1a95ae7224e6d4904d7ap1@TNS4
2.84e-31FFCP PHASE1:Hg19::chr19:17905938..17905980,+#_b10b69a3fc4aa6007985650cca2adb97p1@B3GNT3
2.84e-31FFCP PHASE2:Hg19::chr19:17905938..17905980,+#_b10b69a3fc4aa6007985650cca2adb97p1@B3GNT3
3.29e-31FFCP PHASE1:Hg19::chr11:706219..706260,+#_c3d541961a12d9a5afe706b39d965519p1@EPS8L2
3.29e-31FFCP PHASE2:Hg19::chr11:706219..706260,+#_c3d541961a12d9a5afe706b39d965519p1@EPS8L2
4.16e-31FFCP PHASE2:Hg19::chr3:111451321..111451372,+#_d3f8dcace7b62cc719224eba4b0d4076p3@PHLDB2
4.16e-31FFCP PHASE1:Hg19::chr3:111451321..111451372,+#_d3f8dcace7b62cc719224eba4b0d4076p3@PHLDB2
5.94e-31FFCP PHASE1:Hg19::chr16:57653946..57653968,+#_37e0e0d102d1557429317e2ce7dcec7ap4@GPR56
5.94e-31FFCP PHASE2:Hg19::chr16:57653946..57653968,+#_37e0e0d102d1557429317e2ce7dcec7ap4@GPR56
1.21e-30FFCP PHASE1:Hg19::chr5:68711023..68711075,+#_0b4183ae937ea2cdcb89145f812514c9p2@MARVELD2
1.21e-30FFCP PHASE2:Hg19::chr5:68711023..68711075,+#_0b4183ae937ea2cdcb89145f812514c9p2@MARVELD2
1.74e-30FFCP PHASE1:Hg19::chr19:751104..751121,+#_8f062f89cd6434f112d06036e945eafep2@C19orf21
1.74e-30FFCP PHASE2:Hg19::chr19:751104..751121,+#_8f062f89cd6434f112d06036e945eafep2@C19orf21
2.5e-30FFCP PHASE1:Hg19::chr8:144815914..144815961,-#_f856baafe90573c7c2688a8767ab6b53p1@FAM83H
2.5e-30FFCP PHASE2:Hg19::chr8:144815914..144815961,-#_f856baafe90573c7c2688a8767ab6b53p1@FAM83H
2.54e-30FFCP PHASE2:Hg19::chr19:50084561..50084603,+#_543617d2b5acf62f04c70d59297d31d8p1@PRRG2
2.54e-30FFCP PHASE1:Hg19::chr19:50084561..50084603,+#_543617d2b5acf62f04c70d59297d31d8p1@PRRG2
4.0e-30FFCP PHASE2:Hg19::chr1:27189631..27189648,+#_74f69ec23c5d68fd741a5a04d245c998p1@SFN
4.0e-30FFCP PHASE1:Hg19::chr1:27189631..27189648,+#_74f69ec23c5d68fd741a5a04d245c998p1@SFN
4.35e-30FFCP PHASE2:Hg19::chrX:115567767..115567784,+#_3bfd0e2e0db3462324c1c811581726d8p1@SLC6A14
4.35e-30FFCP PHASE1:Hg19::chrX:115567767..115567784,+#_3bfd0e2e0db3462324c1c811581726d8p1@SLC6A14
4.53e-30FFCP PHASE2:Hg19::chr16:31147020..31147058,-#_a24246686c56dfc54bbad9cc002c904dp1@PRSS8
4.53e-30FFCP PHASE1:Hg19::chr16:31147020..31147058,-#_a24246686c56dfc54bbad9cc002c904dp1@PRSS8
5.44e-30FFCP PHASE1:Hg19::chr4:15939963..15939978,-#_ba0a23ee5cd6b670c9cc1265186a132bp1@FGFBP1
5.44e-30FFCP PHASE2:Hg19::chr4:15939963..15939978,-#_ba0a23ee5cd6b670c9cc1265186a132bp1@FGFBP1
5.82e-30FFCP PHASE1:Hg19::chr1:200864020..200864063,+#_33d4356766e859c5006052b747c9791cp1@C1orf106
5.82e-30FFCP PHASE2:Hg19::chr1:200864020..200864063,+#_33d4356766e859c5006052b747c9791cp1@C1orf106
9.01e-30FFCP PHASE1:Hg19::chr9:139379069..139379135,-#_3269850a9c13f8c973b4dfa91ae881b9p@chr9:139379069..139379135, -
9.01e-30FFCP PHASE2:Hg19::chr9:139379069..139379135,-#_3269850a9c13f8c973b4dfa91ae881b9-, p@chr9:139379069..139379135
1.06e-29FFCP PHASE2:Hg19::chr11:72492256..72492358,-#_f3275b322d081d3e17ecb2f5aef5fc5cp3@STARD10
1.06e-29FFCP PHASE1:Hg19::chr11:72492256..72492358,-#_f3275b322d081d3e17ecb2f5aef5fc5cp3@STARD10
1.06e-29FFCP PHASE1:Hg19::chr14:65409502..65409511,-#_f3275b322d081d3e17ecb2f5aef5fc5cp3@GPX2
1.06e-29FFCP PHASE2:Hg19::chr14:65409502..65409511,-#_f3275b322d081d3e17ecb2f5aef5fc5cp3@GPX2
1.32e-29FFCP PHASE2:Hg19::chr1:201368476..201368498,-#_a01a4167a01bffee17c74fd2da9096eap4@LAD1
1.32e-29FFCP PHASE1:Hg19::chr1:201368476..201368498,-#_a01a4167a01bffee17c74fd2da9096eap4@LAD1
2.3e-29FFCP PHASE1:Hg19::chr5:134369905..134369972,-#_fb0c435f243be547a3e5b3657c4d4af8p1@PITX1
2.3e-29FFCP PHASE2:Hg19::chr5:134369905..134369972,-#_fb0c435f243be547a3e5b3657c4d4af8p1@PITX1
2.62e-29FFCP PHASE2:Hg19::chr1:153588789..153588808,-#_84308e92642a72b258a1a9566258062ap1@S100A14
2.62e-29FFCP PHASE1:Hg19::chr1:153588789..153588808,-#_84308e92642a72b258a1a9566258062ap1@S100A14
3.05e-29FFCP PHASE1:Hg19::chr1:207206095..207206121,-#_1e06c14d240677362fd57c61e226beeep2@C1orf116
3.05e-29FFCP PHASE2:Hg19::chr1:207206095..207206121,-#_1e06c14d240677362fd57c61e226beeep2@C1orf116
3.1e-29FFCP PHASE2:Hg19::chr1:201979703..201979721,+#_93d1aa406c5178ef09e6a090077e443ep2@ELF3
3.1e-29FFCP PHASE1:Hg19::chr1:201979703..201979721,+#_93d1aa406c5178ef09e6a090077e443ep2@ELF3
3.71e-29FFCP PHASE1:Hg19::chr19:50084621..50084673,+#_c5cd56b33d82c725944b72b1e9d22a96p2@PRRG2
3.71e-29FFCP PHASE2:Hg19::chr19:50084621..50084673,+#_c5cd56b33d82c725944b72b1e9d22a96p2@PRRG2
4.26e-29FFCP PHASE1:Mm9::chr13:4190454..4190472,+#_319010e3a3576e9641b8be9e95464533p2@Akr1c13
4.26e-29FFCP PHASE2:Mm9::chr13:4190454..4190472,+#_319010e3a3576e9641b8be9e95464533p2@Akr1c13
5.11e-29FFCP PHASE1:Hg19::chr11:706174..706213,+#_29808264a3a919f60a455ce4a995b7a9p2@EPS8L2
5.11e-29FFCP PHASE2:Hg19::chr11:706174..706213,+#_29808264a3a919f60a455ce4a995b7a9p2@EPS8L2
5.22e-29FFCP PHASE1:Hg19::chr17:75277512..75277592,+#_6997d47b68c154292cc84e020c6c9d53p2@SEPT9
5.22e-29FFCP PHASE2:Hg19::chr17:75277512..75277592,+#_6997d47b68c154292cc84e020c6c9d53p2@SEPT9
5.95e-29FFCP PHASE1:Hg19::chr5:125706998..125707018,+#_5724e40a29bb7c1b59037a595aa7d5bfp4@GRAMD3
5.95e-29FFCP PHASE2:Hg19::chr5:125706998..125707018,+#_5724e40a29bb7c1b59037a595aa7d5bfp4@GRAMD3