Personal tools

UBERON:0001255

From FANTOM5_SSTAR

Jump to: navigation, search

Name:urinary bladder
Namespace:FANTOM
Definition:"Organ with organ cavity which is continuous proximally with the right and left ureters and distally with the urethra." [FMA:15900, Wikipedia:Urinary_bladder]
Xrefs:
links:

AAO:0000623
BTO:0001418
EFO:0000290
EHDAA2:0000174
EHDAA:9328
EMAPA:18321
EV:0100098
FMA:15900
GAID:0000004
galen:UrinaryBladder
[1]
[ 200px-Urinary_system.svg.png 200px-Urinary_system.svg.png]
MA:0000380
MAT:0000122
MESH:A.05.810.161
MIAA:0000122
ncithesaurus:Bladder
OpenCyc:Mx4rvVjMmZwpEbGdrcN5Y29ycA
SCTID:302512001
VHOG:0000740

XAO:0000154
Synonyms: "bladder" EXACT []
"excretory canal" BROAD []
"vesica urinaria" RELATED LATIN [Wikipedia:Urinary_bladder]
Comments:editor note: consider adding a 'bladder' grouping class
Alt_id: UBERON:FMA_15900-FMA_7203-MA_0000368-MA_0000380-MIAA_0000118-MIAA_0000119-MIAA_0000122-WBbt_0005775-XAO_0000154-ZFA_0000529
Subset: major_organ
organ_slim
uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000489(cavitated compound organ),UBERON:0002075(viscus),UBERON:0004120(mesoderm-derived structure),UBERON:0006554(urinary system structure)
develops_from:UBERON:0000164(primitive urogenital sinus)
part_of:UBERON:0001556(lower urinary tract)



Children

derives from:FF:0010011 (human bladder - adult sample),FF:0011437 (mouse urinary bladder- adult sample)
part of:UBERON:0001256 (wall of urinary bladder),UBERON:0001259 (mucosa of urinary bladder),CL:0002597 (smooth muscle cell of bladder),UBERON:0004645 (urinary bladder urothelium),CL:1001319 (bladder cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001255 (urinary bladder), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr15:99673979..99673984,+#_2c05b9049aa6f1d0b902d7807dc6f71dp27@SYNM
1.55e-98FFCP PHASE2:Hg19::chr15:99673979..99673984,+#_2c05b9049aa6f1d0b902d7807dc6f71dp27@SYNM
1.55e-98FFCP PHASE1:Hg19::chr9:125155637..125155639,+#_2c05b9049aa6f1d0b902d7807dc6f71dp@chr9:125155637..125155639, +
1.55e-98FFCP PHASE1:Hg19::chr10:5660248..5660254,-#_2c05b9049aa6f1d0b902d7807dc6f71dp2@ENST00000427341
1.55e-98FFCP PHASE2:Hg19::chr1:184801068..184801075,-#_2c05b9049aa6f1d0b902d7807dc6f71dp@chr1:184801068..184801075, -
1.55e-98FFCP PHASE2:Hg19::chr10:5660248..5660254,-#_2c05b9049aa6f1d0b902d7807dc6f71dp2@ENST00000427341
1.55e-98FFCP PHASE2:Hg19::chr9:125155637..125155639,+#_2c05b9049aa6f1d0b902d7807dc6f71d+, p@chr9:125155637..125155639
1.55e-98FFCP PHASE1:Hg19::chr15:101282110..101282113,+#_2c05b9049aa6f1d0b902d7807dc6f71dp@chr15:101282110..101282113, +
1.55e-98FFCP PHASE2:Hg19::chr15:101282110..101282113,+#_2c05b9049aa6f1d0b902d7807dc6f71dp@chr15:101282110..101282113, +
1.55e-98FFCP PHASE2:Hg19::chr5:148796190..148796191,+#_2c05b9049aa6f1d0b902d7807dc6f71dp@chr5:148796190..148796191, +
1.55e-98FFCP PHASE1:Hg19::chr5:148796190..148796191,+#_2c05b9049aa6f1d0b902d7807dc6f71dp@chr5:148796190..148796191, +
1.55e-98FFCP PHASE1:Hg19::chr17:3808512..3808513,-#_2c05b9049aa6f1d0b902d7807dc6f71dp@chr17:3808512..3808513, -
1.55e-98FFCP PHASE2:Hg19::chr17:3808512..3808513,-#_2c05b9049aa6f1d0b902d7807dc6f71dp@chr17:3808512..3808513, -
1.55e-98FFCP PHASE1:Hg19::chr1:184801068..184801075,-#_2c05b9049aa6f1d0b902d7807dc6f71dp@chr1:184801068..184801075, -
3.07e-86FFCP PHASE2:Mm9::chr15:36485068..36485103,-#_666dd11fd0d5bfa7db6780f33bf9e653p@chr15:36485068..36485103, -
3.07e-86FFCP PHASE2:Mm9::chr19:58073599..58073605,+#_666dd11fd0d5bfa7db6780f33bf9e653p@chr19:58073599..58073605, +
3.07e-86FFCP PHASE2:Mm9::chr10:77520043..77520048,+#_666dd11fd0d5bfa7db6780f33bf9e653p@chr10:77520043..77520048, +
3.07e-86FFCP PHASE2:Mm9::chr7:31388578..31388584,-#_666dd11fd0d5bfa7db6780f33bf9e653p@chr7:31388578..31388584, -
3.07e-86FFCP PHASE2:Mm9::chr15:84847637..84847642,+#_666dd11fd0d5bfa7db6780f33bf9e653p3@Upk3a
3.07e-86FFCP PHASE1:Mm9::chr19:34791339..34791346,-#_666dd11fd0d5bfa7db6780f33bf9e653p@chr19:34791339..34791346, -
3.07e-86FFCP PHASE1:Mm9::chr11:89595040..89595050,-#_666dd11fd0d5bfa7db6780f33bf9e653p@chr11:89595040..89595050, -
3.07e-86FFCP PHASE1:Mm9::chr10:61188929..61188936,+#_666dd11fd0d5bfa7db6780f33bf9e653p@chr10:61188929..61188936, +
3.07e-86FFCP PHASE1:Mm9::chr18:44429795..44429800,+#_666dd11fd0d5bfa7db6780f33bf9e653p3@Npy6r
3.07e-86FFCP PHASE2:Mm9::chr14:29722238..29722242,-#_666dd11fd0d5bfa7db6780f33bf9e653p@chr14:29722238..29722242, -
3.07e-86FFCP PHASE1:Mm9::chr14:29722238..29722242,-#_666dd11fd0d5bfa7db6780f33bf9e653p@chr14:29722238..29722242, -
3.07e-86FFCP PHASE1:Mm9::chr15:84847637..84847642,+#_666dd11fd0d5bfa7db6780f33bf9e653p3@Upk3a
3.07e-86FFCP PHASE1:Mm9::chr14:68331267..68331286,-#_666dd11fd0d5bfa7db6780f33bf9e653p@chr14:68331267..68331286, -
3.07e-86FFCP PHASE2:Mm9::chr11:89595040..89595050,-#_666dd11fd0d5bfa7db6780f33bf9e653p@chr11:89595040..89595050, -
3.07e-86FFCP PHASE1:Mm9::chr10:77520043..77520048,+#_666dd11fd0d5bfa7db6780f33bf9e653p@chr10:77520043..77520048, +
3.07e-86FFCP PHASE2:Mm9::chr17:24078882..24078896,+#_666dd11fd0d5bfa7db6780f33bf9e653p2@Sbp
3.07e-86FFCP PHASE2:Mm9::chr9:74005044..74005065,+#_666dd11fd0d5bfa7db6780f33bf9e653p@chr9:74005044..74005065, +
3.07e-86FFCP PHASE2:Mm9::chr18:44429795..44429800,+#_666dd11fd0d5bfa7db6780f33bf9e653p3@Npy6r
3.07e-86FFCP PHASE2:Mm9::chr9:109794961..109794968,-#_666dd11fd0d5bfa7db6780f33bf9e653p@chr9:109794961..109794968, -
3.07e-86FFCP PHASE1:Mm9::chr7:31388578..31388584,-#_666dd11fd0d5bfa7db6780f33bf9e653p@chr7:31388578..31388584, -
3.07e-86FFCP PHASE2:Mm9::chr14:68331267..68331286,-#_666dd11fd0d5bfa7db6780f33bf9e653p@chr14:68331267..68331286, -
3.07e-86FFCP PHASE1:Mm9::chr12:80992302..80992309,+#_666dd11fd0d5bfa7db6780f33bf9e653p@chr12:80992302..80992309, +
3.07e-86FFCP PHASE1:Mm9::chr9:74005044..74005065,+#_666dd11fd0d5bfa7db6780f33bf9e653p@chr9:74005044..74005065, +
3.07e-86FFCP PHASE1:Mm9::chr15:36485068..36485103,-#_666dd11fd0d5bfa7db6780f33bf9e653p@chr15:36485068..36485103, -
3.07e-86FFCP PHASE2:Mm9::chr10:61188929..61188936,+#_666dd11fd0d5bfa7db6780f33bf9e653+, p@chr10:61188929..61188936
3.07e-86FFCP PHASE1:Mm9::chr17:24078882..24078896,+#_666dd11fd0d5bfa7db6780f33bf9e653p2@Sbp
3.07e-86FFCP PHASE2:Mm9::chr12:80992302..80992309,+#_666dd11fd0d5bfa7db6780f33bf9e653p@chr12:80992302..80992309, +
3.07e-86FFCP PHASE2:Mm9::chr19:34791339..34791346,-#_666dd11fd0d5bfa7db6780f33bf9e653p@chr19:34791339..34791346, -
3.07e-86FFCP PHASE1:Mm9::chr9:109794961..109794968,-#_666dd11fd0d5bfa7db6780f33bf9e653p@chr9:109794961..109794968, -
3.07e-86FFCP PHASE1:Mm9::chr19:58073599..58073605,+#_666dd11fd0d5bfa7db6780f33bf9e653p@chr19:58073599..58073605, +
2.74e-50FFCP PHASE1:Hg19::chr6:21666284..21666297,+#_32c08e31778648c4e259c4ac139a6b1dp26@LINC00340
2.74e-50FFCP PHASE1:Hg19::chr6:21383702..21383704,+#_32c08e31778648c4e259c4ac139a6b1dp@chr6:21383702..21383704, +
2.74e-50FFCP PHASE2:Hg19::chr6:21383702..21383704,+#_32c08e31778648c4e259c4ac139a6b1dp@chr6:21383702..21383704, +
2.74e-50FFCP PHASE1:Hg19::chr21:39627877..39627884,+#_32c08e31778648c4e259c4ac139a6b1dp@chr21:39627877..39627884, +
2.74e-50FFCP PHASE1:Hg19::chr6:21588091..21588098,-#_32c08e31778648c4e259c4ac139a6b1dp@chr6:21588091..21588098, -
2.74e-50FFCP PHASE2:Hg19::chr6:21664489..21664494,+#_32c08e31778648c4e259c4ac139a6b1dp@chr6:21664489..21664494, +
2.74e-50FFCP PHASE2:Hg19::chr6:21666284..21666297,+#_32c08e31778648c4e259c4ac139a6b1dp26@LINC00340
2.74e-50FFCP PHASE2:Hg19::chr6:21588091..21588098,-#_32c08e31778648c4e259c4ac139a6b1dp@chr6:21588091..21588098, -
2.74e-50FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_32c08e31778648c4e259c4ac139a6b1dp@chr3:13992334..13992338, -
2.74e-50FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_32c08e31778648c4e259c4ac139a6b1dp@chr3:13992334..13992338, -
2.74e-50FFCP PHASE1:Hg19::chr16:15850261..15850268,-#_32c08e31778648c4e259c4ac139a6b1dp@chr16:15850261..15850268, -
2.74e-50FFCP PHASE2:Hg19::chr21:39627877..39627884,+#_32c08e31778648c4e259c4ac139a6b1dp@chr21:39627877..39627884, +
2.74e-50FFCP PHASE2:Hg19::chr4:186567032..186567041,-#_32c08e31778648c4e259c4ac139a6b1dp@chr4:186567032..186567041, -
2.74e-50FFCP PHASE1:Hg19::chr4:186567032..186567041,-#_32c08e31778648c4e259c4ac139a6b1dp@chr4:186567032..186567041, -
2.74e-50FFCP PHASE2:Hg19::chr16:15850261..15850268,-#_32c08e31778648c4e259c4ac139a6b1dp@chr16:15850261..15850268, -
2.74e-50FFCP PHASE1:Hg19::chr6:21664489..21664494,+#_32c08e31778648c4e259c4ac139a6b1dp@chr6:21664489..21664494, +
4.52e-50FFCP PHASE1:Hg19::chr6:21876977..21876981,+#_e2deef71c9e90bd3a4a86d287f547de3p@chr6:21876977..21876981, +
4.52e-50FFCP PHASE2:Hg19::chr1:233430709..233430711,+#_e2deef71c9e90bd3a4a86d287f547de3p@chr1:233430709..233430711, +
4.52e-50FFCP PHASE2:Hg19::chr6:21876977..21876981,+#_e2deef71c9e90bd3a4a86d287f547de3p@chr6:21876977..21876981, +
4.52e-50FFCP PHASE1:Hg19::chr1:233430709..233430711,+#_e2deef71c9e90bd3a4a86d287f547de3p@chr1:233430709..233430711, +
2.74e-44FFCP PHASE2:Mm9::chr7:31391935..31391967,+#_209c0b79a5bc041797b0c88bca3eb031p@chr7:31391935..31391967, +
2.74e-44FFCP PHASE1:Mm9::chr7:31388822..31388831,-#_209c0b79a5bc041797b0c88bca3eb031p@chr7:31388822..31388831, -
2.74e-44FFCP PHASE1:Mm9::chr15:36485291..36485294,-#_209c0b79a5bc041797b0c88bca3eb031p2@Snx31
2.74e-44FFCP PHASE1:Mm9::chr4:41154091..41154099,-#_209c0b79a5bc041797b0c88bca3eb031p@chr4:41154091..41154099, -
2.74e-44FFCP PHASE2:Mm9::chr18:44429732..44429737,+#_209c0b79a5bc041797b0c88bca3eb031p2@Npy6r
2.74e-44FFCP PHASE1:Mm9::chr5:87332887..87332894,+#_209c0b79a5bc041797b0c88bca3eb031p@chr5:87332887..87332894, +
2.74e-44FFCP PHASE2:Mm9::chr4:41154091..41154099,-#_209c0b79a5bc041797b0c88bca3eb031p@chr4:41154091..41154099, -
2.74e-44FFCP PHASE1:Mm9::chr10:77520022..77520033,+#_209c0b79a5bc041797b0c88bca3eb031p@chr10:77520022..77520033, +
2.74e-44FFCP PHASE2:Mm9::chr19:34791405..34791413,-#_209c0b79a5bc041797b0c88bca3eb031p@chr19:34791405..34791413, -
2.74e-44FFCP PHASE2:Mm9::chr15:36485291..36485294,-#_209c0b79a5bc041797b0c88bca3eb031p2@Snx31
2.74e-44FFCP PHASE1:Mm9::chr5:92827077..92827083,+#_209c0b79a5bc041797b0c88bca3eb031p@chr5:92827077..92827083, +
2.74e-44FFCP PHASE1:Mm9::chr7:31390216..31390224,-#_209c0b79a5bc041797b0c88bca3eb031p@chr7:31390216..31390224, -
2.74e-44FFCP PHASE1:Mm9::chr16:44943814..44943823,+#_209c0b79a5bc041797b0c88bca3eb031p4@Cd200r3
2.74e-44FFCP PHASE2:Mm9::chr7:31388597..31388604,-#_209c0b79a5bc041797b0c88bca3eb031p@chr7:31388597..31388604, -
2.74e-44FFCP PHASE1:Mm9::chr19:34791405..34791413,-#_209c0b79a5bc041797b0c88bca3eb031p@chr19:34791405..34791413, -
2.74e-44FFCP PHASE1:Mm9::chr7:31388537..31388547,-#_209c0b79a5bc041797b0c88bca3eb031-, p@chr7:31388537..31388547
2.74e-44FFCP PHASE1:Mm9::chr2:135755239..135755248,+#_209c0b79a5bc041797b0c88bca3eb031p@chr2:135755239..135755248, +
2.74e-44FFCP PHASE1:Mm9::chr7:31391935..31391967,+#_209c0b79a5bc041797b0c88bca3eb031p@chr7:31391935..31391967, +
2.74e-44FFCP PHASE1:Mm9::chr10:76337225..76337243,-#_209c0b79a5bc041797b0c88bca3eb031p@chr10:76337225..76337243, -
2.74e-44FFCP PHASE1:Mm9::chr9:48260437..48260446,+#_209c0b79a5bc041797b0c88bca3eb031p@chr9:48260437..48260446, +
2.74e-44FFCP PHASE2:Mm9::chr4:53416435..53416446,-#_209c0b79a5bc041797b0c88bca3eb031p1@ENSMUST00000154377
2.74e-44FFCP PHASE2:Mm9::chr7:31388822..31388831,-#_209c0b79a5bc041797b0c88bca3eb031p@chr7:31388822..31388831, -
2.74e-44FFCP PHASE2:Mm9::chr9:48260437..48260446,+#_209c0b79a5bc041797b0c88bca3eb031p@chr9:48260437..48260446, +
2.74e-44FFCP PHASE1:Mm9::chr4:117650200..117650211,+#_209c0b79a5bc041797b0c88bca3eb031p@chr4:117650200..117650211, +
2.74e-44FFCP PHASE1:Mm9::chr2:35519156..35519171,+#_209c0b79a5bc041797b0c88bca3eb031p@chr2:35519156..35519171, +
2.74e-44FFCP PHASE1:Mm9::chr16:34922180..34922189,+#_209c0b79a5bc041797b0c88bca3eb031p@chr16:34922180..34922189, +
2.74e-44FFCP PHASE2:Mm9::chr2:35519156..35519171,+#_209c0b79a5bc041797b0c88bca3eb031p@chr2:35519156..35519171, +
2.74e-44FFCP PHASE1:Mm9::chr16:38783715..38783726,-#_209c0b79a5bc041797b0c88bca3eb031-, p@chr16:38783715..38783726
2.74e-44FFCP PHASE1:Mm9::chr18:44429732..44429737,+#_209c0b79a5bc041797b0c88bca3eb031p2@Npy6r
2.74e-44FFCP PHASE1:Mm9::chr4:53416435..53416446,-#_209c0b79a5bc041797b0c88bca3eb031p1@ENSMUST00000154377
2.74e-44FFCP PHASE2:Mm9::chr7:31390216..31390224,-#_209c0b79a5bc041797b0c88bca3eb031-, p@chr7:31390216..31390224
2.74e-44FFCP PHASE2:Mm9::chr16:44943814..44943823,+#_209c0b79a5bc041797b0c88bca3eb031p4@Cd200r3
2.74e-44FFCP PHASE2:Mm9::chr5:92827077..92827083,+#_209c0b79a5bc041797b0c88bca3eb031p@chr5:92827077..92827083, +
2.74e-44FFCP PHASE1:Mm9::chr7:31388597..31388604,-#_209c0b79a5bc041797b0c88bca3eb031p@chr7:31388597..31388604, -
2.74e-44FFCP PHASE2:Mm9::chr16:34922180..34922189,+#_209c0b79a5bc041797b0c88bca3eb031p@chr16:34922180..34922189, +
2.74e-44FFCP PHASE2:Mm9::chr5:87332887..87332894,+#_209c0b79a5bc041797b0c88bca3eb031p@chr5:87332887..87332894, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure which consists of a membranous sac used to temporarily store urine until it is excreted from the body.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.