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UBERON:0003852

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Name:rhombencephalon neural crest
Namespace:FANTOM
Xrefs:
links:

EHDAA2:0001628
EHDAA:362
TAO:0007063
VHOG:0001210

ZFA:0007063
Synonyms: "neural crest hindbrain" EXACT [ZFA:0007063]
"rhombencephalic neural crest" EXACT [ZFA:0007063]
Subset: vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002342(neural crest),UBERON:0003099(cranial neural crest)



Children

develops from:UBERON:0010258 (mesenchyme from rhombencephalic neural crest),UBERON:0010259 (1st arch mesenchyme from neural crest)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003852 (rhombencephalon neural crest), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_4eb56ccc91655258e3a16957387c06ccp14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_4eb56ccc91655258e3a16957387c06ccp14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_041c3dbb351e58fafb6afdc34b85d1fep13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_041c3dbb351e58fafb6afdc34b85d1fep12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_041c3dbb351e58fafb6afdc34b85d1fep12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_041c3dbb351e58fafb6afdc34b85d1fep@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_041c3dbb351e58fafb6afdc34b85d1fep11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_041c3dbb351e58fafb6afdc34b85d1fep@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_041c3dbb351e58fafb6afdc34b85d1fep11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_041c3dbb351e58fafb6afdc34b85d1fep13@C17orf67
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_98a5615ba8c3ee074c36a5e3c9fe52f9p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_98a5615ba8c3ee074c36a5e3c9fe52f9p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_98a5615ba8c3ee074c36a5e3c9fe52f9p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_98a5615ba8c3ee074c36a5e3c9fe52f9p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_e2b2889512fe7151ec98624f646005b5p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_e2b2889512fe7151ec98624f646005b5p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_6c8f7c2243bedd39a83da3ee52939694p9@C17orf67
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_6c8f7c2243bedd39a83da3ee52939694p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_6c8f7c2243bedd39a83da3ee52939694p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_6c8f7c2243bedd39a83da3ee52939694p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_6c8f7c2243bedd39a83da3ee52939694+, p@chr8:57354278..57354286
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_6c8f7c2243bedd39a83da3ee52939694p17@RSRC1
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_473f4918197afe5c93113c1422a8ee7ap@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_473f4918197afe5c93113c1422a8ee7ap@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_17332b73083fcc0d60559f37b7327caap1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_17332b73083fcc0d60559f37b7327caap@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_17332b73083fcc0d60559f37b7327caap@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_17332b73083fcc0d60559f37b7327caap1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_17332b73083fcc0d60559f37b7327caap7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_17332b73083fcc0d60559f37b7327caap7@ALX1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_513d59a1b933d87dd4219acd0f3226a1p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_513d59a1b933d87dd4219acd0f3226a1p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_513d59a1b933d87dd4219acd0f3226a1p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_513d59a1b933d87dd4219acd0f3226a1p@chr2:33519090..33519092, +
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_9604bcbfd767c7d345b0af898fd5abfap@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_9604bcbfd767c7d345b0af898fd5abfap@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_9604bcbfd767c7d345b0af898fd5abfap@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_9604bcbfd767c7d345b0af898fd5abfa-, p@chr8:57353779..57353790
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_9604bcbfd767c7d345b0af898fd5abfap@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_9604bcbfd767c7d345b0af898fd5abfap@chr8:57353666..57353675, -
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_a6029a129a1ed07c86486ddb67ede5f6p8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_a6029a129a1ed07c86486ddb67ede5f6p2@TAS1R1
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_a6029a129a1ed07c86486ddb67ede5f6p12@FAM65C
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_a6029a129a1ed07c86486ddb67ede5f6p8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_a6029a129a1ed07c86486ddb67ede5f6p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_a6029a129a1ed07c86486ddb67ede5f6p12@FAM65C
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_5611f8b5860773a793e779668f0b1e3cp@chr16:67687543..67687559, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_5611f8b5860773a793e779668f0b1e3cp@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_5611f8b5860773a793e779668f0b1e3cp@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_5611f8b5860773a793e779668f0b1e3cp@chr5:75912831..75912842, -
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_7272474a92efad6d55ac0103443a9825p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_7272474a92efad6d55ac0103443a9825p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_7272474a92efad6d55ac0103443a9825p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_7272474a92efad6d55ac0103443a9825p@chr6:46190219..46190230, -
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_f80e6a0b21f51ceae77f96d8027b5b47p5@PENK
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_f80e6a0b21f51ceae77f96d8027b5b47p5@PENK
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_f80e6a0b21f51ceae77f96d8027b5b47p4@CPZ
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_f80e6a0b21f51ceae77f96d8027b5b47p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_f80e6a0b21f51ceae77f96d8027b5b47p4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_f80e6a0b21f51ceae77f96d8027b5b47p@chr10:15760985..15760992, -
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_90ad2fa9a23afade21924050b100bd7ep9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_90ad2fa9a23afade21924050b100bd7ep9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_fb2a10ebe51524f21c49a2cde0cede5ep@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_fb2a10ebe51524f21c49a2cde0cede5ep@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_fdc4d074be5008edc0d7cc11c3dd43f8-, p@chr8:57353676..57353688
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_fdc4d074be5008edc0d7cc11c3dd43f8p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_fdc4d074be5008edc0d7cc11c3dd43f8p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_fdc4d074be5008edc0d7cc11c3dd43f8p@chr13:58291223..58291226, +
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_f78761e1327d88b526b5a97fc742b8dbp12@FBN2
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_f78761e1327d88b526b5a97fc742b8dbp4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_f78761e1327d88b526b5a97fc742b8db-, p@chr5:19721484..19721507
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_f78761e1327d88b526b5a97fc742b8dbp4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_f78761e1327d88b526b5a97fc742b8dbp12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_f78761e1327d88b526b5a97fc742b8dbp@chr5:19721484..19721507, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_ecd92d588f401741b0da33ef048de6e9+, p@chr8:57354360..57354367
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_ecd92d588f401741b0da33ef048de6e9-, p@chr8:57353982..57353991
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_ecd92d588f401741b0da33ef048de6e9p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_ecd92d588f401741b0da33ef048de6e9p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_ecd92d588f401741b0da33ef048de6e9p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_ecd92d588f401741b0da33ef048de6e9p@chr8:57354360..57354367, +
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_beeb77c190ba46fbd418b0e33879f05bp10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_beeb77c190ba46fbd418b0e33879f05bp10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_beeb77c190ba46fbd418b0e33879f05bp7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_beeb77c190ba46fbd418b0e33879f05bp7@SHOX2
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_3b6a1f218a6246abc8274a82baa95f14p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_3b6a1f218a6246abc8274a82baa95f14p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_3b6a1f218a6246abc8274a82baa95f14p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_3b6a1f218a6246abc8274a82baa95f14p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_3b6a1f218a6246abc8274a82baa95f14p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_3b6a1f218a6246abc8274a82baa95f14p@chrX:132670143..132670152, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_a6a3e17471ee232e7cd6555a9f636a0ep@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_a6a3e17471ee232e7cd6555a9f636a0ep@chr1:21904551..21904569, -
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_8f83b5f57cf8df5d24b8d8e501512fc2p18@MEF2D
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_8f83b5f57cf8df5d24b8d8e501512fc2p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_8f83b5f57cf8df5d24b8d8e501512fc2p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_8f83b5f57cf8df5d24b8d8e501512fc2p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_8f83b5f57cf8df5d24b8d8e501512fc2-, p@chr8:57359975..57359992
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_8f83b5f57cf8df5d24b8d8e501512fc2p18@MEF2D
4.2e-29FFCP PHASE1:Hg19::chr13:36046127..36046134,+#_d6c6e1e7bdf2e86e6ff92746a2623125p@chr13:36046127..36046134, +
4.2e-29FFCP PHASE2:Hg19::chr1:75602768..75602785,+#_d6c6e1e7bdf2e86e6ff92746a2623125+, p@chr1:75602768..75602785










Property "Property value" (as page type) with input value "UBPROP:0000001 "Cranial neural crest that is part of the hindbrain.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.