FFCP PHASE1:Hg19::chr19:17571680..17571693,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=115861 | |EntrezGene=115861 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25179 | |HGNC=25179 | ||
|TSSclassifier=strong | |||
|UniProt=Q96CM4 | |UniProt=Q96CM4 | ||
|association_with_transcript=31bp_to_ENST00000301944,NM_138454,uc002ngs.2_5end | |||
|cluster_id=chr19:17571680..17571693,- | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_3_at_NXNL1_5end | |||
|id=chr19:17571680..17571693,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;8.00e-18;3 | |||
|ontology_enrichment_disease=DOID:5409!1.80e-07!4 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!2.42e-50!2;UBERON:0002757!2.42e-50!2;UBERON:0010134!2.42e-50!2;UBERON:0002784!2.42e-50!2;UBERON:0005408!2.42e-50!2;UBERON:0001899!2.42e-50!2;UBERON:0003296!8.66e-26!4;UBERON:0010133!8.66e-26!4;UBERON:0002038!9.79e-26!1;UBERON:0009661!9.79e-26!1;UBERON:0000966!7.35e-21!5;UBERON:0005388!7.35e-21!5;UBERON:0001802!7.35e-21!5;UBERON:0001894!3.29e-15!7;UBERON:0006222!3.29e-15!7;UBERON:0002950!1.37e-13!2;UBERON:0001891!1.37e-13!2;UBERON:0009616!1.37e-13!2;UBERON:0002298!3.20e-13!8;UBERON:0000970!6.14e-12!20;UBERON:0002104!2.11e-11!21;UBERON:0000020!1.81e-10!23;UBERON:0003075!2.40e-10!86;UBERON:0007284!2.40e-10!86;UBERON:0003056!2.94e-10!61;UBERON:0005743!3.14e-10!86;UBERON:0001032!4.63e-10!24;UBERON:0004456!4.63e-10!24;UBERON:0002346!6.79e-10!90;UBERON:0006331!1.67e-09!3;UBERON:0001896!1.81e-09!3;UBERON:0005290!1.81e-09!3;UBERON:0010096!1.81e-09!3;UBERON:0000073!2.76e-09!94;UBERON:0001016!2.76e-09!94;UBERON:0000955!6.15e-09!69;UBERON:0006238!6.15e-09!69;UBERON:0001017!1.40e-07!82;UBERON:0001049!3.11e-07!57;UBERON:0005068!3.11e-07!57;UBERON:0006241!3.11e-07!57;UBERON:0007135!3.11e-07!57;UBERON:0000033!3.31e-07!123;UBERON:0002616!5.27e-07!59;UBERON:0000153!7.10e-07!129;UBERON:0007811!7.10e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;4.22e-98;2!UBERON:0002757;4.22e-98;2!UBERON:0010134;4.22e-98;2!UBERON:0005408;4.22e-98;2!UBERON:0001899;4.22e-98;2!UBERON:0003296;8.47e-50;4!UBERON:0010133;8.47e-50;4!UBERON:0002784;8.47e-50;4!UBERON:0001894;4.86e-29;7!UBERON:0000966;2.94e-11;5!UBERON:0005388;2.94e-11;5!UBERON:0001802;2.94e-11;5!UBERON:0000970;5.16e-11;20!UBERON:0002104;1.53e-10;21!UBERON:0000020;1.02e-09;23!UBERON:0001032;2.35e-09;24!UBERON:0004456;2.35e-09;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,4.22e-98,2;UBERON:0002757,4.22e-98,2;UBERON:0010134,4.22e-98,2;UBERON:0005408,4.22e-98,2;UBERON:0001899,4.22e-98,2;UBERON:0003296,8.47e-50,4;UBERON:0010133,8.47e-50,4;UBERON:0002784,8.47e-50,4;UBERON:0001894,4.86e-29,7;UBERON:0006222,4.86e-29,7;UBERON:0000970,1.53e-10,21;UBERON:0002104,1.53e-10,21;UBERON:0000966,1.32e-09,6;UBERON:0005388,1.32e-09,6;UBERON:0001802,1.32e-09,6;UBERON:0000020,2.35e-09,24;UBERON:0001032,2.35e-09,24;UBERON:0004456,2.35e-09,24;UBERON:0003056,4.61e-08,61 | |||
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|short_description=p3@NXNL1 | |||
}} | }} |
Latest revision as of 12:15, 16 September 2015
Short description: | p3@NXNL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NXNL1_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 31bp_to_ENST00000301944, NM_138454, uc002ngs.2_5end |
EntrezGene: | NXNL1 |
HGNC: | 25179 |
UniProt: | Q96CM4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 4.22e-98 | 2 |
regional part of epithalamus | 4.22e-98 | 2 |
secretory circumventricular organ | 4.22e-98 | 2 |
circumventricular organ | 4.22e-98 | 2 |
epithalamus | 4.22e-98 | 2 |
gland of diencephalon | 8.47e-50 | 4 |
neuroendocrine gland | 8.47e-50 | 4 |
regional part of diencephalon | 8.47e-50 | 4 |
diencephalon | 4.86e-29 | 7 |
future diencephalon | 4.86e-29 | 7 |
eye | 1.53e-10 | 21 |
visual system | 1.53e-10 | 21 |
retina | 1.32e-09 | 6 |
photoreceptor array | 1.32e-09 | 6 |
posterior segment of eyeball | 1.32e-09 | 6 |
sense organ | 2.35e-09 | 24 |
sensory system | 2.35e-09 | 24 |
entire sense organ system | 2.35e-09 | 24 |
pre-chordal neural plate | 4.61e-08 | 61 |