EntrezGene:6908
From FANTOM5_SSTAR
| Symbol: | TBP | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Description: | TATA box binding protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Synonyms: | GTF2D, GTF2D1, HDL4, SCA17, TFIID | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Species: | Human (Homo sapiens) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Xrefs: |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Associated motifs: |  JASPAR motif:MA0108.2
Processing...
Showing 1 to 25 of 169 entries | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Transcripton Factor?: | Yes |
TSS regions
| Hg19::chr6:170862932..170862947,+ | p5@TBP |
| Hg19::chr6:170863353..170863368,+ | p2@TBP |
| Hg19::chr6:170863423..170863484,+ | p1@TBP |
| Hg19::chr6:170863498..170863514,+ | p3@TBP |
| Hg19::chr6:170863672..170863698,+ | p6@TBP |
| Hg19::chr6:170863699..170863716,+ | p8@TBP |
| Hg19::chr6:170871224..170871263,+ | p4@TBP |
| TSS peak ID | Short_description |
|---|
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
TSS expression
| Sample | p1@TBP | p2@TBP | p3@TBP | p4@TBP | p5@TBP |
|---|
- Click each plot point to find sample in table
ENCODE TF ChIP-seq peak enrichment analysis Analyst: Erik Arner <br>Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><br><br>link to source dataset.<br>data
(#promoters = Number of promoters in the coexpression cluster that have ChIP signal of the TF)
| Coexpression cluster | #promoters | Enrichment | p-value | q-value |
|---|
Coexpression cluster | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix | 147 | 1.39e+0 | 2.95e-6 | 1.01e-4 |
| C534-Mesenchymal-Alveolar-Renal-Placental-Fibroblast-Smooth-Tracheal | 14 | 3.05e+0 | 3.08e-6 | 1.04e-4 |
| C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric | 24 | 1.74e+0 | 1.69e-3 | 1.05e-2 |
| C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils | 86 | 2.18e+0 | 5.66e-16 | 1.09e-13 |
| C527-CD4-CD8-CD19-CD34-CD133-skeletal-Mesenchymal | 15 | 3.27e+0 | 2.21e-7 | 1.18e-5 |
| C730-migratory-cord-Mast-B-b-CD14-CD19 | 8 | 2.70e+0 | 2.04e-3 | 1.19e-2 |
| C1115-CD4-CD34-CD8-CD19-Basophils-Peripheral-Dendritic | 6 | 3.18e+0 | 2.07e-3 | 1.20e-2 |
| C1134-Eosinophils-Neutrophils-CD19-CD8-Natural-CD4-Basophils | 6 | 3.18e+0 | 2.07e-3 | 1.20e-2 |
| C1140-hepatocellular-B-small-gastrointestinal-argyrophil-liver-temporal | 6 | 3.18e+0 | 2.07e-3 | 1.20e-2 |
| C1150-CD14-thymus-hepatoblastoma-CD4-CD34-Natural-CD8 | 6 | 3.18e+0 | 2.07e-3 | 1.20e-2 |
Details<b>Summary:</b>It includes sequences from the international sequence collaboration, Swiss-Prot, and RefSeq. The RefSeq subset of this file is also available as gene2refseq.<br><br>links to source dataset.<br>human <br>mouse
| GeneID: | 6908 |
|---|---|
| LocusTag: | RP1-191N21.3 |
| chromosome: | 6 |
| map location: | 6q27 |
| type of gene: | protein-coding |
| Symbol from nomenclature authority: | TBP |
| Full name from nomenclature authority: | TATA box binding protein |
| Nomenclature status: | O |
| Other designations: | TATA sequence-binding protein, TATA-box binding protein N-terminal domain, TATA-box factor, TATA-box-binding protein, transcription initiation factor TFIID TBP subunit, TATA sequence-binding protein;;TATA-box binding protein N-terminal domain;;TATA-box factor;;TATA-box-binding protein;;transcription initiation factor TFIID TBP subunit |
| Modification date: | 08.01.2012 |
