Personal tools

Coexpression cluster:C1407: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 5: Line 5:
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002390!6.37e-17!102;UBERON:0003061!6.37e-17!102;UBERON:0002193!1.33e-14!112;UBERON:0001474!4.35e-14!86;UBERON:0002371!3.91e-13!80;UBERON:0004765!2.72e-09!101;UBERON:0001434!2.72e-09!101;UBERON:0002405!1.20e-07!115;UBERON:0002384!4.19e-07!375
|ontology_enrichment_uberon=UBERON:0002390!6.37e-17!102;UBERON:0003061!6.37e-17!102;UBERON:0002193!1.33e-14!112;UBERON:0001474!4.35e-14!86;UBERON:0002371!3.91e-13!80;UBERON:0004765!2.72e-09!101;UBERON:0001434!2.72e-09!101;UBERON:0002405!1.20e-07!115;UBERON:0002384!4.19e-07!375
|tf_chipseq_enrich=CHD2#1106;4:6.89601522274457:0.00111539132013599:0.00766131891375749!IRF3#3661;2:15.6606507371632:0.00641762098993253:0.0279154485034387!MXI1#4601;4:6.6410477525062:0.00128851695803914:0.00863855582107135!PBX3#5090;3:10.9572563433721:0.00171175344181094:0.010689017501303!RFX5#5993;3:6.02395541359755:0.00943790403633506:0.0356035853224055!SIX5#147912;3:8.5433576777295:0.00350475948801243:0.0177979955347919!SMARCC1#6599;3:21.8316796598157:0.000227953389317106:0.00251502472289132!SP1#6667;4:3.7989209187606:0.0105224661679851:0.0389465869553174!TBP#6908;6:3.70677068709639:0.00038541647290796:0.00377745035792365!TCF7L2#6934;3:5.38508828156867:0.0129048877993104:0.0464061418197905!TFAP2C#7022;3:5.40461430493011:0.0127757616669587:0.0460607488516813
|tfbs_overrepresentation=0.272825,0.113895,0.462362,0.093154,0.359621,0.148479,0.0841651,0.657264,0.0643695,0.0507505,0.259407,0.399944,0.341907,0.0303636,0.275252,0.119969,0.262088,0.18676,0.102909,0.204438,0.341686,0.0335456,0.157234,0.180791,0.0814159,0.384547,0.37494,0.173212,0.266831,0.178021,0.3679,0.215086,0.0357376,0.373119,0.128625,0.161809,0.676156,0.0840902,0.226218,0.128959,0.183651,0.0486174,0.260466,0.334176,0.227213,0.0711697,0.074588,0.330075,0.210181,0.227712,0.284405,0.105423,0.135407,0.177342,0.358057,0.0753565,0.203364,0.380173,0.150513,0.199999,0.0579941,0.276509,0.205409,0.146128,0.10616,0.0984283,0.580456,0.116417,0.164736,0.3062,0.61426,0.130776,0.170145,0.224513,0.0148962,0.0339424,0.183676,0.0854797,0.0731115,0.0144524,0.182113,0.402334,0.0831938,0.216503,0.497782,0.440248,0.124542,0.37437,0.559841,0.121557,0.164159,0.0967167,0.181667,0.0925031,0.163486,0.216824,0.524679,0.28366,0.17689,0.473112,0.111667,0.476145,0.263619,0.0727591,0.390176,0.080182,0.12949,0.561883,0.267635,0.466115,0.331856,0.0668385,0.276738,0.0350582,0.0197817,0.0663658,0.0402636,0.1101,0.258716,0.160649,0.305628,0.383317,0.0373668,0.164207,0.194257,0.322526,0.173151,0.0293679,0.161604,0.251658,0.115605,0.144069,0.111159,0.045053,0.235761,0.204515,0.125521,0.10761,0.0649881,0.00789487,0.0450332,0.238929,0.366262,0.28766,0.837237,0.133829,0.18788,0.161361,0.0763672,0.227065,0.361034,0.266711,0.328768,0.0524571,0.0835935,0.221281,0.14393,0.40461,0.100724,0.0663128,0.403582,0.181487,0.219679,0.273735,0.472167,0.215506,0.0784618,0.238515,0.0790799,0.172721,0.327089,0.256483,0.712672,0.10534,0.153476,0.172044,0.260974,0.061911,0.325054,0.069998,0.0476775,0.229948,0.0540612,0.21779,0.142014,0.223569,0.332561,0.0787371,0.158872,0.317,0.20281,0.339514,0.230757,0.405269,0.212647,0.0919303,0.150381,0.116937,0.130723,0.207318,0.170629,0.00714667,0.0607132,0.117534,0.254283,0.451528,0.472314,0.280641,0.0789355,0.324906,0.0896296,0.197823,0.22763,0.213053,0.527451,0.309534,0.301442,0.191696,0.122022,0.195373,0.263715,0.239196,0.287766,0.296123,0.142265,0.237192,0.258424,0.164555,0.117251,0.116204,0.239261,0.62151,0.0819301,0.147153,0.18264,0.177704,0.092224,0.45696,0.30027,0.383466,0.331647,0.57619,0.187116,0.15928,0.219044,0.254951,0.156377,0.21083,0.239609,0.220359,0.292806,0.336043,0.336985,0.186448,0.186558,0.293852,0.202983,0.362971,0.134325,0.521047,0.120009,0.319541,0.300061,0.239783,0.0678354,0.155564,0.15574,0.175654,0.222213,0.145331,0.479224,0.122578,0.444637,0.693924,0.165683,0.0746442,0.243403,0.524718,0.455691,0.365143,0.599514,0.809072,0.673858,0.639175,0.197406,0.319502,0.454695,0.116691,0.607724,0.522841,0.155098,0.552041,0.635008,0.191087,0.452242,0.569904,0.469955,0.498953,0.646895,0.0826405,0.825036,0.837729,0.339439,0.593966,0.33041,0.6682,0.207878,0.552298,0.388991,0.671702,0.611777,0.711836,0.875797,0.018714,0.432462,0.237248,0.291623,0.734265,0.442844,0.138021,0.512499,0.378377,0.53335,0.397052,0.753214,0.551491,0.486953,0.530428,0.821632,0.498324,0.333306,0.820775,0.659897,0.499918,0.726203,0.685903,0.607959,0.514078,0.847056,0.0622748,0.702368,0.451054,0.519866,0.474883,0.417024,0.336852,0.572701,0.78433,0.468536,0.584906,0.753048,0.76366,0.434325,0.43545,0.142502,0.721622,0.29984,0.129605,0.140844,0.335439,0.273639,0.943767,0.82514,0.65524,0.384166,0.469565,0.47635,0.69534,0.38945,0.527767,0.6863,0.0881806,0.143918,0.405564,0.877625,0.531159,0.40641,0.502548,0.568759,0.726789,0.494769,0.547216,0.668888,0.47878,0.236529,0.673583,0.404165,0.559521,0.356202,0.288188,0.499303,0.665296,0.73237,0.297898,0.766191,0.549655,0.557914,0.268648,0.269896,0.622411,0.610862,0.69455,0.708323,0.440842,0.282051,0.0909735,0.2554,0.451268,0.251408,0.187452,0.468679,0.501137,0.488193,0.569315,0.519135,0.166271,0.548889,0.753073,0.772364,0.488244,0.456149,0.589702,0.401321,0.647111,0.660192,0.595103,0.713637,0.308376,0.369917,0.774751,0.622534,0.683229,0.46597,0.563445,0.799582,0.483651,0.263421,0.703388,0.770075,0.293756,0.42025,0.238998,0.410562,0.343113,0.170331,0.115576,0.438442,0.859607,0.57398,0.203911,0.577344,0.724447,0.645462,0.336246,0.591262,0.532388,0.134669,0.108266,0.0691392,0.149912,0.111821,0.267815,0.396879,0.365836,0.689622,0.68834,0.346776,0.211334,0.494962,0.0851816,0.514659,0.23696,0.251518,0.202355,0.471945,0.121642,0.617317,0.0354999,0.515499,0.481305,0.078451,0.0908048,0.310441,0.216037,0.198185,0.171816,0.165877,0.294115,0.202749,0.0858038,0.00776602,0.23191,0.241631,0.376483,0.349839,0.572771,0.0974547,0.15892,0.128942,0.331179,0.210172,0.390637,0.554857,0.352924,0.246924,0.341783,0.0940377,0.359953,0.64718,0.239194,0.32067,0.334938,0.309827,0.167604,0.181395,0.0223847,0.395388,0.202628,0.474729,0.00960329,0.317242,0.262323,0.378417,0.0592343,0.245796,0.0870651,0.101982,0.374106,0.044438,0.153213,0.185351,0.29465,0.231794,0.173078,0.108497,0.485366,0.767403,0.255803,0.0289867,0.127078,0.378656,0.392439,0.153874,0.145835,0.297422,0.349099,0.106792,0.149864,0.109211,0.081783,0.0678906,0.076236,0.444489,0.31161,0.361651,0.0953991,0.319245,0.603631,0.0650516,0.575882,0.390908,0.0773818,0.115736,0.296177,0.229952,0.205891,0.207936,0.454529,0.0563868,0.796918,0.268235,0.0761868,0.167255,0.107028,0.267379,0.443026,0.387018,0.343977,0.0328145,0.632847,0.417985,0.491614,0.146453,0.315229,0.157053,0.332022,0.557852,0.273582,0.262915,0.306556,0.0376263,0.170005,0.523331,0.491788,0.092369,0.18076,0.329937,0.248113,0.148878,0.206465,0.240599,0.245625,0.902248,0.696152,0.100989,0.188919,0.0975693,0.119835,0.145322,0.178533,0.267392,0.0668831,0.142859,0.138266,0.749878,0.358495,0.387334,0.494914,0.224219,3.56933e-07,0.324262,0.795569,0.111827,0.0929171,0.63152,0.118035,0.0577116,0.510835,0.137556,0.0922978,0.49748,0.0699003,0.235435,0.31953,0.861679,0.314983,0.0790496,0.388777,0.204831,0.130161,0.205669,0.0963721,0.182511,0.369139,0.145449,0.0892237,0.208284,0.135613,0.401189,0.283386,0.0739625,0.247651,0.0879809,0.104922,0.215434,0.177269,0.31512,0.198881,0.394164,0.111068,0.4137,0.146194,0.491435,0.281527,0.35188,0.3889,0.192889,0.547162,0.316041,0.565635,0.280212,0.121421,0.346061,0.275075,0.754571,0.287361,0.138613,0.175356,0.116846,0.267784,0.278571,0.185281,0.286026,0.31159,0.349805,0.255609,0.404239,0.439697,0.493192,0.223892,0.160738,0.553042,0.213489,0.212611,0.338443,0.319005,0.0174084,0.45842,0.436073,0.261316,0.189596,0.448839,0.196587,0.213353,0.0504588,0.307626,0.173101,0.525576,0.306056,0.341713,0.156156,0.33569,0.288104,0.526446,0.761719,0.114697,0.433479,0.324956,0.388835,0.0980391,0.648685,0.855529,0.070868,0.28729,0.245,0.0850317,0.0340601,0.0961982,0.60218,0.696439,0.281293,0.409327,0.792771,0.111549,0.603176,0.670776,0.696176,0.355968,0.636386,0.592254,0.647186,0.616927,0.518189,0.15467,0.312447,0.255628,0.628346,0.387005,0.40423,0.689958,0.772379,0.599685,0.776166,0.402631,0.768239,0.853963,0.255824,0.488239,0.754734,0.476894,0.735002,0.494578,0.301433,0.711296,0.148546,0.509735,0.727698,0.559471,0.360334,0.449761,0.6937,0.427531,0.577777,0.629087,0.929695,0.403716,0.297082,0.765839,0.612581,0.397935,0.622334,0.607585,0.593416,0.72684,0.366986,0.759983,0.567049,0.36546,0.360788,0.368898,0.510705,0.119581,0.670481,0.212589,0.619669,0.287839,0.262665,0.286983,0.183051,0.175142,0.218878,0.300816,0.407994,0.225997,0.487688,0.491994,0.529993,0.329919,0.484887,0.583109,0.300668,0.282589,0.426477,0.183267,0.359774,0.563634,0.848142,0.624569,0.772094,0.406519,0.455987,0.394773,0.659669,0.659285,0.129844,0.742622,0.516717,0.367684,0.700165,0.258457,0.893393,0.305952,0.356524,0.159817,0.532764,0.730276,0.319704,0.555004,0.240491,0.436503,0.283145,0.597394,0.452272,0.628973,0.22846,0.416321,0.365565,0.13482,0.24311,0.116922,0.578885,0.474879,0.601828,0.166381,0.424119,0.0149171,0.519279,0.515179,0.745866,0.076169,0.171067,0.438945,0.0742738,0.346229,0.754688,0.0894513,0.172059,0.355152,0.346355,0.354044,0.841498,0.520214,0.708106,0.144299,0.809543,0.722202,0.639482,0.134711,0.0658589,0.474504,0.621275,0.373171,0.0612483,0.564042,0.356483,0.5588,0.256519,0.55481,0.0660081,0.509842,0.866311,0.368631,0.321667,0.149733,0.138058,0.368449,0.066291,0.343349,0.450702,0.341084,0.138667,0.459605,0.0498677,0.345583,0.0501588,0.390707,0.372757,0.172033,0.181635,0.304651,0.440771,0.246146,0.118662,0.371991,0.332112,0.326635,0.349721,0.39301,0.396235,0.566617,0.524829,0.388491,0.357781,0.338712,0.231439,0.359148,0.0641227,0.177916,0.232711,0.327419,0.402268,0.479755,0.163801,0.245045,0.080461,0.433875,0.395243,0.130132,0.373481,0.462042,0.213394,0.270174,0.406219,0.298,0.0963341,0.30902,0.0755079,0.12783,0.101672,0.0890286,0.465261,0.362561,0.578088,0.285875,0.225945,0.18761,0.20516,0.115576,0.086142,0.291842,0.392097,0.352327,0.232997,0.451856,0.0386848,0.328594,0.294205,0.0226154,0.00456039,0.387086,0.232479,0.334662,0.336321,0.139427,0.450171,0.454978,0.366035,0.381922,0.372037,0.263608,0.3488,0.43615,0.218495,0.398705,0.431643,0.316114,0.360691,0.26003,0.35537,0.423126,0.288449,0.244977,0.447896,0.395958,0.314638,0.322324,0.184473,0.363414,0.524458,0.482957,0.388728,0.157712,0.3633,0.202084,0.104337,0.104656,0.279419,0.149946,0.0797883,0.104584,0.537494,0.454949,0.378002,0.340219,0.0169449,0.0670912,0.155969,0.186603,0.124175,0.228962,0.12366,0.198264,0.128253,0.14669,0.240899,0.206424,0.0862744,0.129421,0.171188,0.0721407,0.251724,0.36701,0.504058,0.491191,0.573638,0.263371,0.457065,0.446399,0.0106579,0.403229,0.507716,0.442751,0.323763,0.486842,0.458912,0.246162,0.295506,0.369944,0.358783,0.491474,0.417013,0.544575,0.21822,0.388558,0.397562,0.21727,0.351946,0.345508,0.484083,0.486223,0.437432,0.302171,0.398223,0.178399,0.547908,0.400541,0.372405,0.182559,0.164471,0.533328,0.313891,0.292462,0.46896,0.137165,0.467981,0.191837,0.395568,0.320916,0.289812,0.384881,0.441686,0.078683,0.592234
|tfbs_overrepresentation=0.272825,0.113895,0.462362,0.093154,0.359621,0.148479,0.0841651,0.657264,0.0643695,0.0507505,0.259407,0.399944,0.341907,0.0303636,0.275252,0.119969,0.262088,0.18676,0.102909,0.204438,0.341686,0.0335456,0.157234,0.180791,0.0814159,0.384547,0.37494,0.173212,0.266831,0.178021,0.3679,0.215086,0.0357376,0.373119,0.128625,0.161809,0.676156,0.0840902,0.226218,0.128959,0.183651,0.0486174,0.260466,0.334176,0.227213,0.0711697,0.074588,0.330075,0.210181,0.227712,0.284405,0.105423,0.135407,0.177342,0.358057,0.0753565,0.203364,0.380173,0.150513,0.199999,0.0579941,0.276509,0.205409,0.146128,0.10616,0.0984283,0.580456,0.116417,0.164736,0.3062,0.61426,0.130776,0.170145,0.224513,0.0148962,0.0339424,0.183676,0.0854797,0.0731115,0.0144524,0.182113,0.402334,0.0831938,0.216503,0.497782,0.440248,0.124542,0.37437,0.559841,0.121557,0.164159,0.0967167,0.181667,0.0925031,0.163486,0.216824,0.524679,0.28366,0.17689,0.473112,0.111667,0.476145,0.263619,0.0727591,0.390176,0.080182,0.12949,0.561883,0.267635,0.466115,0.331856,0.0668385,0.276738,0.0350582,0.0197817,0.0663658,0.0402636,0.1101,0.258716,0.160649,0.305628,0.383317,0.0373668,0.164207,0.194257,0.322526,0.173151,0.0293679,0.161604,0.251658,0.115605,0.144069,0.111159,0.045053,0.235761,0.204515,0.125521,0.10761,0.0649881,0.00789487,0.0450332,0.238929,0.366262,0.28766,0.837237,0.133829,0.18788,0.161361,0.0763672,0.227065,0.361034,0.266711,0.328768,0.0524571,0.0835935,0.221281,0.14393,0.40461,0.100724,0.0663128,0.403582,0.181487,0.219679,0.273735,0.472167,0.215506,0.0784618,0.238515,0.0790799,0.172721,0.327089,0.256483,0.712672,0.10534,0.153476,0.172044,0.260974,0.061911,0.325054,0.069998,0.0476775,0.229948,0.0540612,0.21779,0.142014,0.223569,0.332561,0.0787371,0.158872,0.317,0.20281,0.339514,0.230757,0.405269,0.212647,0.0919303,0.150381,0.116937,0.130723,0.207318,0.170629,0.00714667,0.0607132,0.117534,0.254283,0.451528,0.472314,0.280641,0.0789355,0.324906,0.0896296,0.197823,0.22763,0.213053,0.527451,0.309534,0.301442,0.191696,0.122022,0.195373,0.263715,0.239196,0.287766,0.296123,0.142265,0.237192,0.258424,0.164555,0.117251,0.116204,0.239261,0.62151,0.0819301,0.147153,0.18264,0.177704,0.092224,0.45696,0.30027,0.383466,0.331647,0.57619,0.187116,0.15928,0.219044,0.254951,0.156377,0.21083,0.239609,0.220359,0.292806,0.336043,0.336985,0.186448,0.186558,0.293852,0.202983,0.362971,0.134325,0.521047,0.120009,0.319541,0.300061,0.239783,0.0678354,0.155564,0.15574,0.175654,0.222213,0.145331,0.479224,0.122578,0.444637,0.693924,0.165683,0.0746442,0.243403,0.524718,0.455691,0.365143,0.599514,0.809072,0.673858,0.639175,0.197406,0.319502,0.454695,0.116691,0.607724,0.522841,0.155098,0.552041,0.635008,0.191087,0.452242,0.569904,0.469955,0.498953,0.646895,0.0826405,0.825036,0.837729,0.339439,0.593966,0.33041,0.6682,0.207878,0.552298,0.388991,0.671702,0.611777,0.711836,0.875797,0.018714,0.432462,0.237248,0.291623,0.734265,0.442844,0.138021,0.512499,0.378377,0.53335,0.397052,0.753214,0.551491,0.486953,0.530428,0.821632,0.498324,0.333306,0.820775,0.659897,0.499918,0.726203,0.685903,0.607959,0.514078,0.847056,0.0622748,0.702368,0.451054,0.519866,0.474883,0.417024,0.336852,0.572701,0.78433,0.468536,0.584906,0.753048,0.76366,0.434325,0.43545,0.142502,0.721622,0.29984,0.129605,0.140844,0.335439,0.273639,0.943767,0.82514,0.65524,0.384166,0.469565,0.47635,0.69534,0.38945,0.527767,0.6863,0.0881806,0.143918,0.405564,0.877625,0.531159,0.40641,0.502548,0.568759,0.726789,0.494769,0.547216,0.668888,0.47878,0.236529,0.673583,0.404165,0.559521,0.356202,0.288188,0.499303,0.665296,0.73237,0.297898,0.766191,0.549655,0.557914,0.268648,0.269896,0.622411,0.610862,0.69455,0.708323,0.440842,0.282051,0.0909735,0.2554,0.451268,0.251408,0.187452,0.468679,0.501137,0.488193,0.569315,0.519135,0.166271,0.548889,0.753073,0.772364,0.488244,0.456149,0.589702,0.401321,0.647111,0.660192,0.595103,0.713637,0.308376,0.369917,0.774751,0.622534,0.683229,0.46597,0.563445,0.799582,0.483651,0.263421,0.703388,0.770075,0.293756,0.42025,0.238998,0.410562,0.343113,0.170331,0.115576,0.438442,0.859607,0.57398,0.203911,0.577344,0.724447,0.645462,0.336246,0.591262,0.532388,0.134669,0.108266,0.0691392,0.149912,0.111821,0.267815,0.396879,0.365836,0.689622,0.68834,0.346776,0.211334,0.494962,0.0851816,0.514659,0.23696,0.251518,0.202355,0.471945,0.121642,0.617317,0.0354999,0.515499,0.481305,0.078451,0.0908048,0.310441,0.216037,0.198185,0.171816,0.165877,0.294115,0.202749,0.0858038,0.00776602,0.23191,0.241631,0.376483,0.349839,0.572771,0.0974547,0.15892,0.128942,0.331179,0.210172,0.390637,0.554857,0.352924,0.246924,0.341783,0.0940377,0.359953,0.64718,0.239194,0.32067,0.334938,0.309827,0.167604,0.181395,0.0223847,0.395388,0.202628,0.474729,0.00960329,0.317242,0.262323,0.378417,0.0592343,0.245796,0.0870651,0.101982,0.374106,0.044438,0.153213,0.185351,0.29465,0.231794,0.173078,0.108497,0.485366,0.767403,0.255803,0.0289867,0.127078,0.378656,0.392439,0.153874,0.145835,0.297422,0.349099,0.106792,0.149864,0.109211,0.081783,0.0678906,0.076236,0.444489,0.31161,0.361651,0.0953991,0.319245,0.603631,0.0650516,0.575882,0.390908,0.0773818,0.115736,0.296177,0.229952,0.205891,0.207936,0.454529,0.0563868,0.796918,0.268235,0.0761868,0.167255,0.107028,0.267379,0.443026,0.387018,0.343977,0.0328145,0.632847,0.417985,0.491614,0.146453,0.315229,0.157053,0.332022,0.557852,0.273582,0.262915,0.306556,0.0376263,0.170005,0.523331,0.491788,0.092369,0.18076,0.329937,0.248113,0.148878,0.206465,0.240599,0.245625,0.902248,0.696152,0.100989,0.188919,0.0975693,0.119835,0.145322,0.178533,0.267392,0.0668831,0.142859,0.138266,0.749878,0.358495,0.387334,0.494914,0.224219,3.56933e-07,0.324262,0.795569,0.111827,0.0929171,0.63152,0.118035,0.0577116,0.510835,0.137556,0.0922978,0.49748,0.0699003,0.235435,0.31953,0.861679,0.314983,0.0790496,0.388777,0.204831,0.130161,0.205669,0.0963721,0.182511,0.369139,0.145449,0.0892237,0.208284,0.135613,0.401189,0.283386,0.0739625,0.247651,0.0879809,0.104922,0.215434,0.177269,0.31512,0.198881,0.394164,0.111068,0.4137,0.146194,0.491435,0.281527,0.35188,0.3889,0.192889,0.547162,0.316041,0.565635,0.280212,0.121421,0.346061,0.275075,0.754571,0.287361,0.138613,0.175356,0.116846,0.267784,0.278571,0.185281,0.286026,0.31159,0.349805,0.255609,0.404239,0.439697,0.493192,0.223892,0.160738,0.553042,0.213489,0.212611,0.338443,0.319005,0.0174084,0.45842,0.436073,0.261316,0.189596,0.448839,0.196587,0.213353,0.0504588,0.307626,0.173101,0.525576,0.306056,0.341713,0.156156,0.33569,0.288104,0.526446,0.761719,0.114697,0.433479,0.324956,0.388835,0.0980391,0.648685,0.855529,0.070868,0.28729,0.245,0.0850317,0.0340601,0.0961982,0.60218,0.696439,0.281293,0.409327,0.792771,0.111549,0.603176,0.670776,0.696176,0.355968,0.636386,0.592254,0.647186,0.616927,0.518189,0.15467,0.312447,0.255628,0.628346,0.387005,0.40423,0.689958,0.772379,0.599685,0.776166,0.402631,0.768239,0.853963,0.255824,0.488239,0.754734,0.476894,0.735002,0.494578,0.301433,0.711296,0.148546,0.509735,0.727698,0.559471,0.360334,0.449761,0.6937,0.427531,0.577777,0.629087,0.929695,0.403716,0.297082,0.765839,0.612581,0.397935,0.622334,0.607585,0.593416,0.72684,0.366986,0.759983,0.567049,0.36546,0.360788,0.368898,0.510705,0.119581,0.670481,0.212589,0.619669,0.287839,0.262665,0.286983,0.183051,0.175142,0.218878,0.300816,0.407994,0.225997,0.487688,0.491994,0.529993,0.329919,0.484887,0.583109,0.300668,0.282589,0.426477,0.183267,0.359774,0.563634,0.848142,0.624569,0.772094,0.406519,0.455987,0.394773,0.659669,0.659285,0.129844,0.742622,0.516717,0.367684,0.700165,0.258457,0.893393,0.305952,0.356524,0.159817,0.532764,0.730276,0.319704,0.555004,0.240491,0.436503,0.283145,0.597394,0.452272,0.628973,0.22846,0.416321,0.365565,0.13482,0.24311,0.116922,0.578885,0.474879,0.601828,0.166381,0.424119,0.0149171,0.519279,0.515179,0.745866,0.076169,0.171067,0.438945,0.0742738,0.346229,0.754688,0.0894513,0.172059,0.355152,0.346355,0.354044,0.841498,0.520214,0.708106,0.144299,0.809543,0.722202,0.639482,0.134711,0.0658589,0.474504,0.621275,0.373171,0.0612483,0.564042,0.356483,0.5588,0.256519,0.55481,0.0660081,0.509842,0.866311,0.368631,0.321667,0.149733,0.138058,0.368449,0.066291,0.343349,0.450702,0.341084,0.138667,0.459605,0.0498677,0.345583,0.0501588,0.390707,0.372757,0.172033,0.181635,0.304651,0.440771,0.246146,0.118662,0.371991,0.332112,0.326635,0.349721,0.39301,0.396235,0.566617,0.524829,0.388491,0.357781,0.338712,0.231439,0.359148,0.0641227,0.177916,0.232711,0.327419,0.402268,0.479755,0.163801,0.245045,0.080461,0.433875,0.395243,0.130132,0.373481,0.462042,0.213394,0.270174,0.406219,0.298,0.0963341,0.30902,0.0755079,0.12783,0.101672,0.0890286,0.465261,0.362561,0.578088,0.285875,0.225945,0.18761,0.20516,0.115576,0.086142,0.291842,0.392097,0.352327,0.232997,0.451856,0.0386848,0.328594,0.294205,0.0226154,0.00456039,0.387086,0.232479,0.334662,0.336321,0.139427,0.450171,0.454978,0.366035,0.381922,0.372037,0.263608,0.3488,0.43615,0.218495,0.398705,0.431643,0.316114,0.360691,0.26003,0.35537,0.423126,0.288449,0.244977,0.447896,0.395958,0.314638,0.322324,0.184473,0.363414,0.524458,0.482957,0.388728,0.157712,0.3633,0.202084,0.104337,0.104656,0.279419,0.149946,0.0797883,0.104584,0.537494,0.454949,0.378002,0.340219,0.0169449,0.0670912,0.155969,0.186603,0.124175,0.228962,0.12366,0.198264,0.128253,0.14669,0.240899,0.206424,0.0862744,0.129421,0.171188,0.0721407,0.251724,0.36701,0.504058,0.491191,0.573638,0.263371,0.457065,0.446399,0.0106579,0.403229,0.507716,0.442751,0.323763,0.486842,0.458912,0.246162,0.295506,0.369944,0.358783,0.491474,0.417013,0.544575,0.21822,0.388558,0.397562,0.21727,0.351946,0.345508,0.484083,0.486223,0.437432,0.302171,0.398223,0.178399,0.547908,0.400541,0.372405,0.182559,0.164471,0.533328,0.313891,0.292462,0.46896,0.137165,0.467981,0.191837,0.395568,0.320916,0.289812,0.384881,0.441686,0.078683,0.592234
}}
}}

Revision as of 13:34, 5 September 2012


Full id: C1407_Basophils_Natural_Eosinophils_CD4_CD8_Mast_CD14



Phase1 CAGE Peaks

Hg19::chr15:66111552..66111563,+p@chr15:66111552..66111563
+
Hg19::chr19:55850581..55850600,-p@chr19:55850581..55850600
-
Hg19::chr1:161136054..161136081,-p@chr1:161136054..161136081
-
Hg19::chr2:232469600..232469641,+p@chr2:232469600..232469641
+
Hg19::chr6:30524800..30524820,+p5@PRR3
Hg19::chr9:129482190..129482227,+p@chr9:129482190..129482227
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
leukocyte6.63e-34140
hematopoietic stem cell1.18e-31172
angioblastic mesenchymal cell1.18e-31172
hematopoietic oligopotent progenitor cell7.35e-29165
hematopoietic multipotent progenitor cell7.35e-29165
hematopoietic cell2.37e-28182
hematopoietic lineage restricted progenitor cell1.20e-27124
nongranular leukocyte4.19e-26119
CD14-positive, CD16-negative classical monocyte4.16e-2242
classical monocyte6.37e-2145
myeloid leukocyte6.62e-1776
myeloid cell2.94e-15112
common myeloid progenitor2.94e-15112
granulocyte monocyte progenitor cell2.98e-1471
myeloid lineage restricted progenitor cell1.20e-1370
lymphocyte1.89e-1353
common lymphoid progenitor1.89e-1353
lymphoid lineage restricted progenitor cell3.72e-1352
macrophage dendritic cell progenitor1.46e-1265
monopoietic cell1.01e-1163
monocyte1.01e-1163
monoblast1.01e-1163
promonocyte1.01e-1163
mature alpha-beta T cell1.84e-0818
alpha-beta T cell1.84e-0818
immature T cell1.84e-0818
mature T cell1.84e-0818
immature alpha-beta T cell1.84e-0818
mesenchymal cell1.52e-07358
T cell2.19e-0725
pro-T cell2.19e-0725
connective tissue cell7.24e-07365
Uber Anatomy
Ontology termp-valuen
hematopoietic system6.37e-17102
blood island6.37e-17102
hemolymphoid system1.33e-14112
bone element4.35e-1486
bone marrow3.91e-1380
skeletal element2.72e-09101
skeletal system2.72e-09101
immune system1.20e-07115
connective tissue4.19e-07375


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
CHD2#110646.896015222744570.001115391320135990.00766131891375749
IRF3#3661215.66065073716320.006417620989932530.0279154485034387
MXI1#460146.64104775250620.001288516958039140.00863855582107135
PBX3#5090310.95725634337210.001711753441810940.010689017501303
RFX5#599336.023955413597550.009437904036335060.0356035853224055
SIX5#14791238.54335767772950.003504759488012430.0177979955347919
SMARCC1#6599321.83167965981570.0002279533893171060.00251502472289132
SP1#666743.79892091876060.01052246616798510.0389465869553174
TBP#690863.706770687096390.000385416472907960.00377745035792365
TCF7L2#693435.385088281568670.01290488779931040.0464061418197905
TFAP2C#702235.404614304930110.01277576166695870.0460607488516813



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.