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{{f5samples
 
{{f5samples
 +
|DRA_sample_Accession=CAGE@SAMD00005468
 +
|accession_numbers=CAGE;DRX007939;DRR008811;DRZ000236;DRZ001621;DRZ011586;DRZ012971
 
|ancestors_in_anatomy_facet=
 
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000220,CL:0000004,CL:0000255,CL:0000222,CL:0000077
+
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
 
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566
 
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566
 +
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0102424
 
|comment=
 
|comment=
 
|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
|datafreeze_phase=1
+
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
 
|expression_enrichment_score=chr6:10415276..10415341,-!p2@TFAP2A!1.83!81.17!TFAP2A;;chr11:61520075..61520136,+!p1@C11orf9!1.59!77.78!C11orf9;;chr5:172662197..172662216,-!p1@NKX2-5!1.54!33.41!NKX2-5;;chr17:46132044..46132080,+!p4@NFE2L1!1.53!32.62!NFE2L1;;chr6:10412392..10412409,-!p4@TFAP2A!1.50!34.45!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.49!30.01!IRX2;;chr17:46703687..46703740,-!p1@HOXB9!1.48!29.23!HOXB9;;chr15:83953397..83953425,-!p1@BNC1!1.45!31.06!BNC1;;chr22:19748231..19748317,+!p1@TBX1!1.43!26.10!TBX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.40!39.67!TFAP2A;;chr21:38071430..38071456,+!p1@SIM2!1.38!22.97!SIM2;;chr14:37051798..37051831,-!p1@NKX2-8!1.33!20.62!NKX2-8;;chr12:80084167..80084197,-!p5@PAWR!1.30!44.37!PAWR;;chr21:38071403..38071428,+!p2@SIM2!1.27!17.75!SIM2;;chr8:72756637..72756664,-!p3@MSC!1.25!19.05!MSC;;chr11:31832658..31832681,-!p1@PAX6!1.19!14.62!PAX6;;chr6:1389789..1389821,+!p1@FOXF2!1.18!19.57!FOXF2;;chr3:138665937..138665968,-!p1@FOXL2!1.17!13.83!FOXL2;;chr16:54320101..54320125,-!p4@IRX3!1.13!17.75!IRX3;;chr12:80084737..80084763,-!p3@PAWR!1.12!46.20!PAWR;;chr8:72756063..72756125,-!p1@MSC!1.12!24.79!MSC;;chr12:80084137..80084165,-!p10@PAWR!1.12!15.66!PAWR;;chr6:126240380..126240430,+!p2@NCOA7!1.11!31.06!NCOA7;;chr8:11561684..11561751,+!p1@GATA4!1.11!12.01!GATA4;;chr8:72756667..72756736,-!p2@MSC!1.09!17.75!MSC;;chr15:96869255..96869291,+!p6@NR2F2!1.08!20.36!NR2F2;;chr5:134369905..134369972,-!p1@PITX1!1.08!16.96!PITX1;;chr6:10415484..10415508,-!p3@TFAP2A!1.06!10.44!TFAP2A;;chr20:42295745..42295765,+!p1@MYBL2!1.01!152.16!MYBL2;;chr12:80084279..80084293,-!p8@PAWR!1.01!15.40!PAWR;;chr5:3595934..3595957,+!p2@IRX1!1.01!9.13!IRX1;;chr5:3595977..3595999,+!p1@IRX1!1.01!9.13!IRX1;;chr20:50721803..50721857,-!p2@ZFP64!0.99!14.09!ZFP64;;chr16:54320158..54320200,-!p5@IRX3!0.99!12.79!IRX3;;chrY:21906594..21906622,-!p1@KDM5D!0.99!8.87!KDM5D;;chr16:86544113..86544145,+!p1@FOXF1!0.98!10.70!FOXF1;;chr12:7079780..7079791,-!p2@PHB2!0.97!45.15!PHB2;;chr1:935398..935465,-!p2@HES4!0.96!16.96!HES4;;chr2:46524897..46524911,+!p2@EPAS1!0.95!22.97!EPAS1;;chr8:60031619..60031676,-!p1@TOX!0.95!17.49!TOX;;chr12:80083544..80083558,-!p13@PAWR!0.95!10.18!PAWR;;chr12:57914286..57914304,-!p1@DDIT3!0.94!288.14!DDIT3;;chr9:4300050..4300118,-!p1@GLIS3!0.94!51.94!GLIS3;;chr2:172949484..172949522,+!p1@DLX1!0.93!7.57!DLX1;;chr13:100623375..100623425,-!p1@ZIC5!0.93!7.57!ZIC5;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.93!7.57!SEBOX;;chr16:29818199..29818216,+!p11@MAZ!0.92!12.27!MAZ;;chr5:2751785..2751808,-!p2@IRX2!0.92!7.31!IRX2;;chr2:5832508..5832524,+!p1@SOX11!0.92!7.31!SOX11;;chr15:96869114..96869160,+!p11@NR2F2!0.90!9.66!NR2F2;;chr8:60031682..60031710,-!p2@TOX!0.89!11.22!TOX;;chr12:80083807..80083859,-!p11@PAWR!0.89!8.61!PAWR;;chr6:10415263..10415274,-!p8@TFAP2A!0.89!6.79!TFAP2A;;chr8:72755987..72756002,-!p7@MSC!0.89!6.79!MSC;;chr3:128207349..128207386,-!p3@GATA2!0.88!6.52!GATA2;;chr12:80084303..80084332,-!p1@PAWR!0.87!40.19!PAWR;;chr3:138665969..138665993,-!p2@FOXL2!0.86!6.26!FOXL2;;chr1:212782094..212782109,+!p1@ATF3!0.85!175.65!ATF3;;chr11:65667846..65667868,-!p1@FOSL1!0.85!169.65!FOSL1;;chr4:4861385..4861398,+!p1@MSX1!0.85!19.05!MSX1;;chr5:172662230..172662241,-!p3@NKX2-5!0.85!6.00!NKX2-5;;chr7:63505799..63505904,+!p1@ZNF727!0.85!6.00!ZNF727;;chr8:55370487..55370503,+!p1@SOX17!0.85!6.00!SOX17;;chr5:72744594..72744609,-!p1@FOXD1!0.84!28.45!FOXD1;;chr11:65667884..65667895,-!p2@FOSL1!0.84!24.53!FOSL1;;chr8:72756023..72756055,-!p6@MSC!0.83!7.31!MSC;;chr6:10412576..10412599,-!p5@TFAP2A!0.83!5.74!TFAP2A;;chr12:3068544..3068597,+!p1@TEAD4!0.82!36.28!TEAD4;;chr19:46271505..46271575,-!p2@SIX5!0.81!14.88!SIX5;;chr5:3595961..3595975,+!p3@IRX1!0.81!5.48!IRX1;;chr2:16080659..16080685,+!p1@MYCN!0.81!5.48!MYCN;;chr14:37051600..37051611,-!p2@NKX2-8!0.81!5.48!NKX2-8;;chr15:96869165..96869183,+!p20@NR2F2!0.81!5.48!NR2F2;;chr6:19837592..19837621,+!p1@ID4!0.80!35.50!ID4;;chr8:86089417..86089440,+!p2@E2F5!0.80!11.22!E2F5;;chr11:65687222..65687240,+!p7@DRAP1!0.79!6.79!DRAP1;;chr10:104155659..104155676,+!p4@NFKB2!0.79!6.52!NFKB2;;chr15:83953373..83953386,-!p2@BNC1!0.79!5.22!BNC1;;chr7:27153454..27153469,-!p2@HOXA3!0.79!5.22!HOXA3;;chr3:128206762..128206781,-!p2@GATA2!0.78!34.45!GATA2;;chr15:96869292..96869320,+!p15@NR2F2!0.78!7.57!NR2F2;;chr17:46688334..46688385,-!p1@HOXB7!0.78!7.57!HOXB7;;chr16:54320322..54320343,-!p7@IRX3!0.78!4.96!IRX3;;chrX:30327504..30327509,-!p1@NR0B1!0.78!4.96!NR0B1;;chr6:28321909..28321965,-!p3@ZNF323!0.78!4.96!ZNF323;;chr1:935467..935484,-!p1@HES4!0.77!23.75!HES4;;chr14:61116183..61116208,-!p1@SIX1!0.77!20.10!SIX1;;chr16:30537839..30537929,-!p1@ZNF768!0.76!32.62!ZNF768;;chr11:65686952..65686975,+!p5@DRAP1!0.76!28.97!DRAP1;;chr6:126240356..126240379,+!p7@NCOA7!0.76!6.00!NCOA7;;chr5:134369879..134369898,-!p2@PITX1!0.76!4.70!PITX1;;chr16:54320280..54320291,-!p9@IRX3!0.76!4.70!IRX3;;chr16:67881647..67881663,-!p3@CENPT!0.76!4.70!CENPT;;chr17:46682321..46682362,-!p1@HOXB6!0.76!4.70!HOXB6;;chr2:74730087..74730102,-!p4@LBX2!0.76!4.70!LBX2;;chr16:58034520..58034622,-!p@chr16:58034520..58034622,-!0.75!39.67!ZNF319;;chr16:29818160..29818188,+!p6@MAZ!0.75!23.49!MAZ;;chr16:54320646..54320672,-!p2@IRX3!0.75!7.31!IRX3;;chr17:41622925..41622976,-!p3@ETV4!0.75!7.31!ETV4;;chr11:65687243..65687276,+!p8@DRAP1!0.75!6.52!DRAP1;;chr8:128748308..128748324,+!p2@MYC!0.74!139.89!MYC;;chr20:42295713..42295738,+!p2@MYBL2!0.74!29.23!MYBL2;;chr6:126102292..126102329,+!p3@NCOA7!0.74!16.18!NCOA7;;chr18:6414884..6414942,-!p1@L3MBTL4!0.74!5.74!L3MBTL4;;chr7:35293685..35293718,-!p1@TBX20!0.74!4.44!TBX20;;chrY:2803415..2803468,+!p1@ZFY!0.74!4.44!ZFY;;chr16:67881588..67881612,-!p2@CENPT!0.73!6.26!CENPT;;chr8:60031809..60031835,-!p4@TOX!0.73!5.74!TOX;;chr6:85473156..85473210,-!p2@TBX18!0.73!5.48!TBX18;;chr16:3333443..3333545,+!p1@ZNF263!0.72!57.68!ZNF263;;chr6:34204921..34204939,+!p3@HMGA1!0.71!141.20!HMGA1;;chr16:2059754..2059777,-!p2@ZNF598!0.71!16.18!ZNF598;;chr9:4299552..4299598,-!p5@GLIS3!0.71!7.57!GLIS3;;chr17:46687959..46688007,-!p2@HOXB7!0.71!6.00!HOXB7;;chr15:96869222..96869251,+!p18@NR2F2!0.71!4.96!NR2F2;;chr16:54320302..54320317,-!p10@IRX3!0.71!4.18!IRX3;;chr9:129376201..129376225,+!p1@LMX1B!0.71!4.18!LMX1B;;chr10:28032421..28032494,-!p2@MKX!0.71!4.18!MKX;;chr8:123793708..123793723,+!p6@ZHX2!0.71!4.18!ZHX2;;chr20:48807171..48807234,+!p4@CEBPB!0.70!9.66!CEBPB;;chr2:74730430..74730451,-!p1@LBX2!0.70!7.05!LBX2;;chr7:28448965..28448994,+!p2@CREB5!0.69!15.14!CREB5;;chr16:1429627..1429662,-!p2@UNKL!0.69!12.79!UNKL;;chr8:72756267..72756296,-!p4@MSC!0.69!6.00!MSC;;chr5:172662303..172662320,-!p2@NKX2-5!0.69!3.91!NKX2-5;;chr12:80084120..80084136,-!p15@PAWR!0.69!3.91!PAWR;;chr16:30546141..30546240,-!p1@ZNF747,p2@ZNF768!0.68!17.23!ZNF747;;chr2:239148671..239148686,-!p1@HES6!0.68!15.66!HES6;;chr19:12203100..12203132,+!p1@ZNF788!0.68!8.35!ZNF788;;chr17:79885633..79885645,-!p4@MAFG!0.68!6.79!MAFG;;chr7:6655225..6655279,+!p1@ENST00000457543!0.68!6.00!ZNF853;;chr2:172967621..172967637,-!p1@DLX2!0.67!10.96!DLX2;;chr16:3185125..3185173,+!p1@ZNF213!0.67!10.44!ZNF213;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.67!3.65!SEBOX;;chr6:126102339..126102351,+!p12@NCOA7!0.67!3.65!NCOA7;;chr11:31832581..31832601,-!p7@PAX6!0.67!3.65!PAX6;;chr14:38064429..38064486,-!p1@FOXA1!0.67!3.65!FOXA1;;chr9:4299874..4299887,-!p9@GLIS3!0.67!3.65!GLIS3;;chr4:174451370..174451387,-!p1@HAND2!0.67!3.65!HAND2;;chr11:615942..615957,-!p1@IRF7!0.66!38.89!IRF7;;chr11:65687362..65687436,+!p3@DRAP1!0.66!18.79!DRAP1;;chr16:3333375..3333388,+!p3@ZNF263!0.66!5.48!ZNF263;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.65!40.19!GLIS2;;chr15:37392094..37392116,-!p6@MEIS2!0.65!4.44!MEIS2;;chr22:31742303..31742350,-!p1@PATZ1!0.64!43.33!PATZ1;;chr9:130954041..130954121,-!p2@CIZ1!0.64!16.70!CIZ1;;chr20:48807779..48807802,+!p10@CEBPB!0.64!6.00!CEBPB;;chr8:60031762..60031803,-!p3@TOX!0.64!5.22!TOX;;chr7:156803329..156803362,-!p1@MNX1!0.64!3.39!MNX1;;chr21:38071462..38071474,+!p3@SIM2!0.64!3.39!SIM2;;chr9:132427883..132427951,+!p2@PRRX2!0.64!3.39!PRRX2;;chr22:29196547..29196563,-!p2@XBP1!0.63!141.72!XBP1;;chr15:67357924..67357952,+!p2@SMAD3!0.63!25.32!SMAD3;;chr19:33793430..33793447,-!p1@CEBPA!0.63!15.92!CEBPA;;chr16:29818132..29818144,+!p12@MAZ!0.63!7.31!MAZ;;chr11:128392273..128392308,-!p2@ETS1!0.62!15.66!ETS1;;chr16:30538079..30538124,-!p3@ZNF768!0.62!10.44!ZNF768;;chr5:76383133..76383186,-!p2@ZBED3!0.62!7.31!ZBED3;;chr5:134369222..134369237,-!p8@PITX1!0.62!3.13!PITX1;;chr8:60031934..60031986,-!p6@TOX!0.62!3.13!TOX;;chr9:94186101..94186122,-!p1@NFIL3!0.61!51.15!NFIL3;;chr14:24630902..24630948,+!p2@IRF9!0.61!3.91!IRF9;;chr8:145159415..145159438,+!p2@MAF1!0.60!71.77!MAF1;;chr13:73633131..73633149,+!p1@KLF5!0.60!38.11!KLF5;;chr12:80085061..80085119,-!p6@PAWR!0.60!5.22!PAWR;;chr16:3333546..3333558,+!p5@ZNF263!0.60!3.39!ZNF263;;chr22:41697520..41697613,+!p1@ZC3H7B!0.59!200.97!ZC3H7B;;chr6:44233252..44233296,-!p1@NFKBIE!0.59!34.45!NFKBIE;;chr6:168227552..168227609,+!p1@MLLT4!0.59!28.71!MLLT4;;chr19:45504688..45504782,+!p1@RELB!0.59!21.14!RELB;;chr5:321810..321877,+!p1@AHRR!0.59!10.70!AHRR;;chr1:45805872..45805900,+!p2@TOE1!0.59!8.09!TOE1;;chr11:32457075..32457095,-!p1@WT1!0.59!2.87!WT1;;chr13:100634088..100634099,+!p5@ZIC2!0.59!2.87!ZIC2;;chr13:100634130..100634143,+!p3@ZIC2!0.59!2.87!ZIC2;;chr6:10412477..10412490,-!p10@TFAP2A!0.59!2.87!TFAP2A;;chr16:88519669..88519726,+!p1@ZFPM1!0.58!30.54!ZFPM1;;chr20:32274179..32274213,-!p1@E2F1!0.58!22.71!E2F1;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.58!12.79!HNRPK;;chr2:46524878..46524891,+!p3@EPAS1!0.58!5.48!EPAS1;;chr4:146859927..146860055,-!p1@ZNF827!0.57!20.10!ZNF827;;chr6:170863353..170863368,+!p2@TBP!0.57!6.00!TBP;;chr3:168864315..168864339,-!p2@MECOM!0.57!4.96!MECOM;;chr1:212873267..212873332,-!p1@BATF3!0.57!3.91!BATF3;;chr6:126240442..126240459,+!p4@NCOA7!0.57!3.65!NCOA7;;chr15:96869511..96869525,+!p16@NR2F2!0.57!3.13!NR2F2;;chr22:22863052..22863133,-!p1@ZNF280B!0.56!8.09!ZNF280B;;chr11:65430554..65430579,-!p3@RELA!0.56!7.83!RELA;;chr16:54320675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 +
|ffid_belonging_in_development=CL:0000222
 
|fonse_cell_line=FF:0102424
 
|fonse_cell_line=FF:0102424
 
|fonse_cell_line_closure=FF:0102424
 
|fonse_cell_line_closure=FF:0102424
Line 36: Line 41:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-25.CNhs13066.10850-111F4.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-25.CNhs13066.10850-111F4.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-25.CNhs13066.10850-111F4.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-25.CNhs13066.10850-111F4.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-25.CNhs13066.10850-111F4.hg38.nobarcode.ctss.bed.gz
 
|id=FF:10850-111F4
 
|id=FF:10850-111F4
 
|is_a=EFO:0002091;;FF:0000210;;FF:0102424
 
|is_a=EFO:0002091;;FF:0000210;;FF:0102424
 
|is_obsolete=
 
|is_obsolete=
 +
|library_id=CNhs13066
 +
|library_id_phase_based=2:CNhs13066
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10850
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10850
 
|name=mesothelioma cell line:Mero-25
 
|name=mesothelioma cell line:Mero-25
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 44: Line 60:
 
|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs13066,LSID1000,release012,COMPLETED
 
|profile_hcage=CNhs13066,LSID1000,release012,COMPLETED
|profile_rnaseq=,,,
+
|profile_rnaseq=
 
|profile_srnaseq=,,,
 
|profile_srnaseq=,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 +
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.248932825418101,0,-0.0295656390046002,0.36736717936275,0,0,0,0.090256725407311,0,0,0,0,0,0,0,0,0,-0.0526098896545067,0,0,0,0,0,0.15318927588108,0,0,0.276294265725625,0,0,0,0,0,0,0,0,0,0,0.182411394908525,0,0.0037475706972852,0.0530760100330021,0,0,0,0,0,0,0,0.320049602694007,0,0,0,0,0,-0.00403016369841624,0,0.154154810906532,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.205237303686883,0,0,0,0.20108016368723,0.101613400444133,0,0.100713120693921,0,0,-0.0980353512377064,-0.0129036147263267,0,0,0,0,0,0,0.100713120693921,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.100713120693921,0,0,0,-0.0021434264078792,0,0,0.0636402706113196,0,0,0
 +
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0.100713120693921,0.100713120693921,0,0,-0.247178875285564,0.0912056974542625,-0.0227665485358209,0.107632029625665,0.0503565603469605,0,0.198033757054731,0,0,0,0.0951612854668544,0.100713120693921,0.182411394908525,0,0,0,0.0542915279559602,0,-0.0504125515893149,0,0,0,0,0.0317312792631098,0.184198638520886,0,-0.0830523636952475,0.0323688596165527,0,0,0,0,0.155927541536032,0,-0.0201663630998197,-0.0827201683234173,-0.00395384543975141,-0.607307042055542,-0.04680465889238,0,0,0,-0.0698291065443958,-0.304392308761244,0,0,0.208419162074938,-0.080636497866738,0,0,-0.391044581551635,0,-0.492121228113239,-0.062854722410814,0,0.0727038639080312,0,0,0,0,0,0,0,0,0,0,0,-0.00713690647447601,-0.0758414245298318,0.0438713248897633,0.310476040226166,0.587816126919762,0,-0.396009092717932,0,0,0.116384713462726,-0.0184848043357237,-0.0082060502376048,0.269365729842987,0,-0.201676606315992,-0.0199660030204598,0.0620092977809571,0.308167632548122,0.0350095455373863,-0.189981719549847,0,-0.270035084593761,-0.296601759694719,0.0229615363629854,0.0655450814596747,-0.00310021891094741,-0.236923921532891,0.0954233366346722,0,0,0.0232041942146178,0.217706645062593,0,0.100713120693921,-0.238967542327637,-0.01409550008949,-0.109605462977287,0.11737004120119,0.129375218575643,-0.107315826064527,0.177246755072161,-0.457436452896595,-0.047029906412741,-0.0913733110768875,0,0,-0.0182344400607739,-0.0978214944258302,-0.296241237688029,0.0519927485631537,0,-0.38326434111706,0.382975409138819,0,0.032757017397271,0.0203750777405383,0.489670869419293,0,-0.327630058722275,0,0,0,0,0.182411394908525,-0.0787170520152911,-0.176826590708747,-0.05044416664702,0,0.087217590227949,0,0.246298465031602,0,0.0172229716147254,0.10830527861536,0,-0.186310628480633,0,0.0472527394203468,-0.287411013443626,-0.0835139287413322,0.102513680194345,-0.0584468268118252,0.20244981942188,-0.183472166164243,0.390907331835745,-0.478463824564061,0.030450730794665,0.98008746054479,0,-0.326044415614411,0.0120178249628957,0,0.0354858529841665,0.100713120693921,0.145262719225526,0,0.108506217404864,0,-0.428646460450683,-0.0155252658871572,-0.12881333435452,-0.0591099923649823,0,0.0610360055044084,0.484815015631391,0,0.0195827085337152,0,0.251147172149137,-0.150367083334639,-0.288445111008095,0.174307776048364,-0.0886328963322342,0,-0.265171672803574,0,0,-0.150833305129937,-0.134762917070468,0,-0.0097365409379806,-0.0842944286273133,0.0872999153891255,-0.0152579527410131,0.489670869419293,0,-0.0882000030887553,0,0,0.490416958936424,-0.0636048451378017,-0.257117771637214,-0.152613220792835,0.0161340355606824,0.0673073369672735,0,0,0.00488362894334918,0,-0.071161827236271,0,0,0.209601750346661,0,0,0.125573586074569,0,0.0271602638744653,0,0,0,0,0.18133277616071,0,-0.0117357948240728,-0.0381850132182018,-0.103686158067311,0,0.271247123556745,0,0,0,0,0.100713120693921,-0.0532008708647105,0,0,-0.159370695525043,0.11964230124205,0.0593939792321046,0,0,0,0,-0.215723402553475,-0.203236562094724,0,0.0505486884108931,0.100713120693921,0,0,0,-0.0861409897892114,0,0,0,0,0.0429826636402569,0.286722351657104,0,0,0,-0.0258072294526533,0,0,0,0,-0.431251747362484,0,0,0.0595857831980402,0,-0.184354899238247,-0.0815818795468414,0,-0.224454626601162,-0.0139704632336275,0.958777334506608,0,0,0.101318420531532,0,0,-0.224310332707432,0,0,0,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0.100713120693921,0,0,0,0,0,-0.445617434655752,0.270441495662909,-0.0640596705171081,0,0,0,0,0,0,-0.0241060230789031,-0.0354777932616335,0,0,0,0,0,0,0,0,0.0860743952407274,0,0,0,0,0,0.154154810906532,0,0.100713120693921,0,0,0.483587186576363,0,0,-0.176649011499593,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.0295656390046002,0,0,0,0,0,0,0,0.312982828713672,0,0.251147172149137,0,0,-0.113884373708977,0,0,0,-0.0040832640952355,0,0.248932825418101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279517430243329,-0.0247755787802223,-0.104796121064385,-0.0255694264402384,0,0,-0.006968517524948,0,0,0,0,0,0,0.0598652734257355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100713120693921,0,0,0,0,0,0,-0.0676146188630243,0,0,0,0,0,0,0,0.15318927588108,0,0,0.124746473728305,0,0,0,0,0,0,-0.132738820543627,0.5245008431228,-0.104058942095085,0,0,0,-0.0040290121354945,0,0,0,0,0.0339357332750196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0526098896545067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0503565603469605,0,0,0,0,0,0,0,0.100713120693921,0.0503565603469605,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102392926639886,0,0,0,-0.112373108963123,0,0,0,0,0,0,0,0,0.100713120693921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00382198855409299,0,0,0,0,0,0,0,0,0.182411394908525,0,0,0,0,0.0524910454548667,0,0.0980347626784977,0,0,0,0,0,0,0,0,0,0,0,0.100713120693921,0,0,0,0,0.224661438760589,0,0,0,0,0.0530760100330021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414208313453328,0,0,0.0679297251899987,0,0,0,0,0,0,0,0,0,0,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|rna_box=111
 
|rna_box=111
 
|rna_catalog_number=
 
|rna_catalog_number=
Line 59: Line 78:
 
|rna_weight_ug=109.1
 
|rna_weight_ug=109.1
 
|sample_age=60
 
|sample_age=60
 +
|sample_category=cell lines
 
|sample_cell_catalog=9100102
 
|sample_cell_catalog=9100102
 
|sample_cell_line=Mero-25
 
|sample_cell_line=Mero-25

Latest revision as of 10:58, 10 August 2017

Name:mesothelioma cell line:Mero-25
Species:Human (Homo sapiens)
Library ID:CNhs13066
Sample type:cell lines
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
RefEX:Specific genes
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuemesothelium
dev stageNA
sexmale
age60
cell typemesothelial cell
cell lineMero-25
companyECACC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Accession numbers
MethodSample accession id
CAGE  SAMD00005468
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13066 CAGE DRX007939 DRR008811
Accession ID Hg19

Library idBAMCTSS
CNhs13066 DRZ000236 DRZ001621
Accession ID Hg38

Library idBAMCTSS
CNhs13066 DRZ011586 DRZ012971
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.155
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.169
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural--0.0281
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19--0.144
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.125
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.101
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.00425
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0263
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.522
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.279
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.114
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.101
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.101
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13066

Jaspar motif P-value
MA0002.2 0.069
MA0003.1 0.941
MA0004.1 0.00949
MA0006.1 0.763
MA0007.1 0.934
MA0009.1 0.357
MA0014.1 0.248
MA0017.1 0.223
MA0018.2 0.0124
MA0019.1 0.531
MA0024.1 0.0197
MA0025.1 0.384
MA0027.1 0.574
MA0028.1 1.55755e-14
MA0029.1 0.82
MA0030.1 0.473
MA0031.1 0.00487
MA0035.2 0.167
MA0038.1 0.455
MA0039.2 0.174
MA0040.1 0.484
MA0041.1 0.61
MA0042.1 0.595
MA0043.1 0.00397
MA0046.1 0.316
MA0047.2 0.0536
MA0048.1 0.00301
MA0050.1 5.67887e-4
MA0051.1 1.91751e-7
MA0052.1 0.0954
MA0055.1 0.00235
MA0057.1 0.635
MA0058.1 0.00811
MA0059.1 2.42819e-4
MA0060.1 0.0157
MA0061.1 0.813
MA0062.2 2.16146e-16
MA0065.2 0.0331
MA0066.1 0.413
MA0067.1 0.53
MA0068.1 0.417
MA0069.1 0.914
MA0070.1 0.0485
MA0071.1 0.751
MA0072.1 0.498
MA0073.1 0.847
MA0074.1 0.663
MA0076.1 1.24193e-12
MA0077.1 0.337
MA0078.1 0.617
MA0079.2 0.312
MA0080.2 1.7572e-7
MA0081.1 0.901
MA0083.1 0.997
MA0084.1 0.416
MA0087.1 0.272
MA0088.1 0.0121
MA0090.1 0.253
MA0091.1 0.113
MA0092.1 0.871
MA0093.1 0.00534
MA0099.2 0.0653
MA0100.1 0.368
MA0101.1 0.273
MA0102.2 0.72
MA0103.1 0.115
MA0104.2 0.00409
MA0105.1 0.485
MA0106.1 0.72
MA0107.1 0.37
MA0108.2 0.319
MA0111.1 0.353
MA0112.2 0.316
MA0113.1 0.179
MA0114.1 0.551
MA0115.1 0.596
MA0116.1 0.579
MA0117.1 0.581
MA0119.1 0.0905
MA0122.1 0.439
MA0124.1 0.0306
MA0125.1 0.344
MA0131.1 0.284
MA0135.1 0.837
MA0136.1 0.0297
MA0137.2 0.751
MA0138.2 0.381
MA0139.1 0.684
MA0140.1 0.286
MA0141.1 0.467
MA0142.1 0.238
MA0143.1 0.0496
MA0144.1 0.0678
MA0145.1 0.611
MA0146.1 0.0412
MA0147.1 0.00102
MA0148.1 0.212
MA0149.1 0.158
MA0150.1 0.111
MA0152.1 0.608
MA0153.1 0.738
MA0154.1 0.162
MA0155.1 0.102
MA0156.1 0.0499
MA0157.1 0.0137
MA0159.1 0.067
MA0160.1 0.709
MA0162.1 0.0877
MA0163.1 0.875
MA0164.1 0.159
MA0258.1 0.421
MA0259.1 0.0525



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13066

Novel motif P-value
1 0.566
10 0.883
100 0.047
101 0.279
102 0.82
103 0.989
104 0.725
105 0.122
106 0.259
107 0.493
108 0.6
109 0.15
11 0.715
110 0.403
111 0.988
112 0.397
113 0.00315
114 0.213
115 0.676
116 0.908
117 0.196
118 0.328
119 0.699
12 0.631
120 0.0311
121 0.797
122 0.199
123 0.0605
124 0.0193
125 0.599
126 0.874
127 0.468
128 0.00105
129 0.137
13 0.00211
130 0.909
131 0.816
132 0.768
133 0.677
134 0.161
135 0.00415
136 0.00709
137 0.0202
138 0.317
139 0.0682
14 0.249
140 0.302
141 0.434
142 0.793
143 0.149
144 0.685
145 0.0776
146 0.459
147 0.929
148 0.0433
149 0.299
15 0.726
150 0.306
151 0.213
152 0.00617
153 0.0798
154 0.0835
155 0.945
156 0.631
157 0.588
158 0.296
159 0.992
16 0.93
160 0.541
161 0.319
162 0.8
163 0.934
164 0.0275
165 0.15
166 0.302
167 0.488
168 0.092
169 0.458
17 0.695
18 0.25
19 0.379
2 0.319
20 0.117
21 0.826
22 0.619
23 0.0213
24 0.799
25 0.424
26 0.645
27 0.287
28 0.809
29 0.123
3 0.309
30 0.485
31 0.972
32 0.153
33 0.159
34 0.344
35 0.735
36 0.515
37 0.125
38 0.601
39 0.661
4 0.861
40 0.0149
41 0.0416
42 0.762
43 0.261
44 0.704
45 0.537
46 0.751
47 0.581
48 0.629
49 0.233
5 0.0272
50 0.782
51 0.643
52 0.129
53 0.111
54 0.336
55 0.0397
56 0.914
57 0.765
58 0.104
59 0.778
6 0.305
60 0.13
61 0.388
62 0.0814
63 0.632
64 0.914
65 0.172
66 0.0884
67 0.896
68 0.446
69 0.945
7 0.575
70 0.338
71 0.83
72 0.41
73 0.0101
74 0.036
75 0.0511
76 0.393
77 0.76
78 0.717
79 0.44
8 0.833
80 0.0715
81 0.416
82 0.115
83 0.366
84 0.0899
85 0.0672
86 0.928
87 0.0269
88 0.85
89 0.794
9 0.189
90 0.00206
91 0.0175
92 0.0143
93 0.559
94 0.969
95 0.0417
96 0.215
97 0.782
98 0.374
99 0.901



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs13066


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000222 (mesodermal cell)