FF:11454-119A5: Difference between revisions

Revision as of 21:06, 9 July 2012

Name:	Fibroblast - Dermal, donor5
Species:	Human (Homo sapiens)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	fetus
sex	unknown
age	fetal
cell type	fibroblast
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	4823
catalog number	SC2305
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.113
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.533
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0267
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.118
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.325
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.418
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.223
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.157
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.697
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0204
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.563
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0652
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0935
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.122
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.444
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.122
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.39
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12055

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0465
MA0003.1	MA0003.1	0.339
MA0004.1	MA0004.1	0.574
MA0006.1	MA0006.1	0.507
MA0007.1	MA0007.1	0.49
MA0009.1	MA0009.1	0.383
MA0014.1	MA0014.1	0.903
MA0017.1	MA0017.1	0.0998
MA0018.2	MA0018.2	0.131
MA0019.1	MA0019.1	0.356
MA0024.1	MA0024.1	2.28299e-9
MA0025.1	MA0025.1	0.337
MA0027.1	MA0027.1	0.628
MA0028.1	MA0028.1	0.0059
MA0029.1	MA0029.1	0.447
MA0030.1	MA0030.1	0.0182
MA0031.1	MA0031.1	0.0155
MA0035.2	MA0035.2	0.0358
MA0038.1	MA0038.1	0.00153
MA0039.2	MA0039.2	0.462
MA0040.1	MA0040.1	0.575
MA0041.1	MA0041.1	0.241
MA0042.1	MA0042.1	0.312
MA0043.1	MA0043.1	0.0123
MA0046.1	MA0046.1	0.949
MA0047.2	MA0047.2	0.65
MA0048.1	MA0048.1	1.77699e-4
MA0050.1	MA0050.1	7.99237e-8
MA0051.1	MA0051.1	4.93849e-6
MA0052.1	MA0052.1	0.919
MA0055.1	MA0055.1	1.42895e-4
MA0057.1	MA0057.1	0.486
MA0058.1	MA0058.1	0.797
MA0059.1	MA0059.1	0.2
MA0060.1	MA0060.1	1.14632e-10
MA0061.1	MA0061.1	0.00522
MA0062.2	MA0062.2	0.277
MA0065.2	MA0065.2	0.0547
MA0066.1	MA0066.1	0.779
MA0067.1	MA0067.1	0.18
MA0068.1	MA0068.1	0.294
MA0069.1	MA0069.1	0.613
MA0070.1	MA0070.1	0.383
MA0071.1	MA0071.1	0.656
MA0072.1	MA0072.1	0.884
MA0073.1	MA0073.1	0.785
MA0074.1	MA0074.1	0.56
MA0076.1	MA0076.1	0.00959
MA0077.1	MA0077.1	0.72
MA0078.1	MA0078.1	0.913
MA0079.2	MA0079.2	0.134
MA0080.2	MA0080.2	6.13827e-12
MA0081.1	MA0081.1	0.112
MA0083.1	MA0083.1	0.639
MA0084.1	MA0084.1	0.152
MA0087.1	MA0087.1	0.524
MA0088.1	MA0088.1	9.4015e-4
MA0090.1	MA0090.1	0.606
MA0091.1	MA0091.1	0.403
MA0092.1	MA0092.1	0.528
MA0093.1	MA0093.1	0.63
MA0099.2	MA0099.2	0.891
MA0100.1	MA0100.1	0.0501
MA0101.1	MA0101.1	0.0566
MA0102.2	MA0102.2	7.67054e-4
MA0103.1	MA0103.1	1.13031e-4
MA0104.2	MA0104.2	0.0314
MA0105.1	MA0105.1	0.0447
MA0106.1	MA0106.1	0.204
MA0107.1	MA0107.1	0.00318
MA0108.2	MA0108.2	0.156
MA0111.1	MA0111.1	0.688
MA0112.2	MA0112.2	0.0162
MA0113.1	MA0113.1	0.938
MA0114.1	MA0114.1	0.197
MA0115.1	MA0115.1	0.959
MA0116.1	MA0116.1	0.144
MA0117.1	MA0117.1	0.813
MA0119.1	MA0119.1	0.758
MA0122.1	MA0122.1	0.32
MA0124.1	MA0124.1	0.483
MA0125.1	MA0125.1	0.225
MA0131.1	MA0131.1	0.159
MA0135.1	MA0135.1	0.715
MA0136.1	MA0136.1	5.32639e-7
MA0137.2	MA0137.2	0.079
MA0138.2	MA0138.2	0.848
MA0139.1	MA0139.1	0.303
MA0140.1	MA0140.1	0.298
MA0141.1	MA0141.1	0.903
MA0142.1	MA0142.1	0.342
MA0143.1	MA0143.1	0.501
MA0144.1	MA0144.1	0.0518
MA0145.1	MA0145.1	0.0261
MA0146.1	MA0146.1	0.339
MA0147.1	MA0147.1	0.0427
MA0148.1	MA0148.1	0.434
MA0149.1	MA0149.1	0.981
MA0150.1	MA0150.1	0.185
MA0152.1	MA0152.1	0.0283
MA0153.1	MA0153.1	0.279
MA0154.1	MA0154.1	0.00886
MA0155.1	MA0155.1	0.126
MA0156.1	MA0156.1	0.0247
MA0157.1	MA0157.1	0.0469
MA0159.1	MA0159.1	0.0138
MA0160.1	MA0160.1	0.273
MA0162.1	MA0162.1	0.336
MA0163.1	MA0163.1	0.841
MA0164.1	MA0164.1	0.655
MA0258.1	MA0258.1	0.0375
MA0259.1	MA0259.1	0.0767

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12055

Novel motif	Logo	P-value
1	1	0.716
10	10	0.178
100	100	0.573
101	101	0.608
102	102	0.445
103	103	0.0276
104	104	0.792
105	105	0.575
106	106	0.00355
107	107	0.194
108	108	0.225
109	109	0.888
11	11	0.973
110	110	0.421
111	111	0.948
112	112	0.0535
113	113	0.0106
114	114	0.228
115	115	0.866
116	116	0.389
117	117	0.8
118	118	0.683
119	119	0.0973
12	12	0.512
120	120	0.178
121	121	0.655
122	122	0.119
123	123	0.402
124	124	0.156
125	125	0.654
126	126	0.841
127	127	0.605
128	128	0.0322
129	129	0.0943
13	13	0.937
130	130	0.00733
131	131	0.53
132	132	0.865
133	133	0.989
134	134	0.517
135	135	0.0492
136	136	0.237
137	137	0.0455
138	138	0.0972
139	139	3.41692e-5
14	14	0.0827
140	140	0.8
141	141	0.791
142	142	0.541
143	143	0.59
144	144	0.519
145	145	0.425
146	146	0.707
147	147	0.457
148	148	0.412
149	149	0.236
15	15	0.264
150	150	0.79
151	151	0.207
152	152	0.13
153	153	0.47
154	154	0.457
155	155	0.0536
156	156	0.547
157	157	0.0976
158	158	0.0288
159	159	0.0319
16	16	0.635
160	160	0.479
161	161	0.879
162	162	0.677
163	163	0.563
164	164	0.773
165	165	0.138
166	166	0.958
167	167	0.643
168	168	0.48
169	169	0.0911
17	17	0.404
18	18	0.686
19	19	0.777
2	2	0.51
20	20	0.196
21	21	0.137
22	22	0.268
23	23	0.036
24	24	0.656
25	25	0.775
26	26	0.328
27	27	0.521
28	28	0.334
29	29	0.916
3	3	0.722
30	30	0.403
31	31	0.451
32	32	0.816
33	33	0.478
34	34	0.327
35	35	0.477
36	36	0.664
37	37	0.545
38	38	0.345
39	39	0.725
4	4	0.11
40	40	0.48
41	41	0.256
42	42	0.865
43	43	0.22
44	44	0.628
45	45	0.045
46	46	0.486
47	47	0.954
48	48	0.618
49	49	0.263
5	5	0.122
50	50	0.571
51	51	0.61
52	52	0.186
53	53	0.341
54	54	0.608
55	55	0.737
56	56	0.764
57	57	0.778
58	58	0.131
59	59	0.378
6	6	0.697
60	60	0.0331
61	61	0.989
62	62	0.243
63	63	0.975
64	64	0.708
65	65	0.155
66	66	0.0758
67	67	0.791
68	68	0.707
69	69	0.663
7	7	0.424
70	70	0.00671
71	71	0.983
72	72	0.176
73	73	0.501
74	74	0.225
75	75	0.473
76	76	0.955
77	77	0.777
78	78	0.71
79	79	0.696
8	8	0.81
80	80	0.0634
81	81	0.375
82	82	0.0081
83	83	0.213
84	84	0.967
85	85	0.013
86	86	0.464
87	87	0.129
88	88	0.322
89	89	0.169
9	9	0.692
90	90	0.627
91	91	0.46
92	92	0.252
93	93	0.724
94	94	0.951
95	95	0.242
96	96	0.303
97	97	0.88
98	98	0.225
99	99	0.0632

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12055

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000062 human dermal fibroblast sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
0002551 (fibroblast of dermis)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002067 (dermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000062 (human dermal fibroblast sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 10: / Line 10: @@
 |def=
 |expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.78!156.85!TWIST1;;chr1:170633348..170633399,+!p2@PRRX1!1.65!58.92!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.64!48.24!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.49!77.86!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!1.48!843.20!HMGA1;;chr19:46801639..46801699,+!p1@HIF3A!1.47!28.33!HIF3A;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.44!26.71!HOXC5;;chr12:66218598..66218645,+!p2@HMGA2!1.40!107.00!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!1.38!26.22!PRRX1;;chr12:66218212..66218244,+!p5@HMGA2!1.35!31.08!HMGA2;;chr5:2751762..2751784,-!p1@IRX2!1.32!20.07!IRX2;;chr12:66218183..66218209,+!p4@HMGA2!1.31!36.75!HMGA2;;chr20:55204351..55204377,+!p1@TFAP2C!1.31!24.44!TFAP2C;;chr2:239756739..239756755,+!p2@TWIST2!1.30!31.89!TWIST2;;chr15:57511609..57511651,+!p2@TCF12!1.22!26.06!TCF12;;chr2:239756671..239756732,+!p1@TWIST2!1.20!46.94!TWIST2;;chr6:85474299..85474324,-!p1@TBX18!1.19!26.06!TBX18;;chr17:46675558..46675577,-!p2@HOXB6!1.13!12.63!HOXB6;;chr2:102091566..102091581,-!p1@RFX8!1.11!11.82!RFX8;;chr18:52969844..52969895,-!p27@TCF4!1.08!11.01!TCF4;;chr15:83953397..83953425,-!p1@BNC1!1.02!11.01!BNC1;;chr12:54402745..54402788,+!p1@HOXC8!1.02!9.55!HOXC8;;chr1:170632439..170632465,+!p11@PRRX1!1.01!9.23!PRRX1;;chr2:5832508..5832524,+!p1@SOX11!1.00!8.90!SOX11;;chr2:176994408..176994492,+!p1@HOXD8!0.99!8.74!HOXD8;;chr2:19558373..19558392,-!p1@OSR1!0.98!24.12!OSR1;;chr5:3595977..3595999,+!p1@IRX1!0.97!8.42!IRX1;;chr20:42543441..42543497,+!p1@TOX2!0.96!37.39!TOX2;;chr17:41622765..41622821,-!p2@ETV4!0.96!12.63!ETV4;;chr17:46682321..46682362,-!p1@HOXB6!0.95!7.93!HOXB6;;chr17:46675420..46675465,-!p3@HOXB6!0.94!8.90!HOXB6;;chr12:54447637..54447659,+!p4@HOXC4!0.94!7.77!HOXC4;;chr12:66218378..66218401,+!p6@HMGA2!0.93!11.82!HMGA2;;chr3:12329358..12329393,+!p3@PPARG!0.91!18.29!PPARG;;chr2:200322654..200322707,-!p2@SATB2!0.91!10.52!SATB2;;chr3:147127142..147127168,+!p1@ZIC1!0.91!7.12!ZIC1;;chr17:41623009..41623053,-!p4@ETV4!0.90!11.49!ETV4;;chr1:170632477..170632506,+!p6@PRRX1!0.90!6.96!PRRX1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.90!6.96!RUNX1T1;;chr18:52969674..52969685,-!p24@TCF4!0.89!6.80!TCF4;;chr17:46667628..46667642,-!p2@HOXB3!0.88!6.64!HOXB3;;chr5:158526917..158526932,-!p1@EBF1!0.87!16.51!EBF1;;chr3:157823517..157823562,-!p1@SHOX2!0.87!6.96!SHOX2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.87!6.47!RUNX1T1;;chr1:170632250..170632277,+!p7@PRRX1!0.87!6.47!PRRX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.86!6.64!GLIS1;;chr2:223163706..223163730,-!p1@PAX3!0.86!6.31!PAX3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.86!6.31!HOXC5;;chr5:2751785..2751808,-!p2@IRX2!0.86!6.31!IRX2;;chr3:12329397..12329433,+!p2@PPARG!0.84!14.08!PPARG;;chr12:66218573..66218596,+!p7@HMGA2!0.84!9.06!HMGA2;;chr12:66218420..66218439,+!p12@HMGA2!0.84!5.99!HMGA2;;chr12:2986206..2986258,-!p2@FOXM1!0.83!37.55!FOXM1;;chr6:85474198..85474212,-!p3@TBX18!0.81!5.50!TBX18;;chrY:21906594..21906622,-!p1@KDM5D!0.81!5.50!KDM5D;;chr5:321810..321877,+!p1@AHRR!0.80!17.97!AHRR;;chr20:42543506..42543549,+!p2@TOX2!0.79!13.11!TOX2;;chr3:141121847..141121868,+!p5@ZBTB38!0.79!8.26!ZBTB38;;chr1:170632723..170632739,+!p8@PRRX1!0.79!5.18!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!0.78!144.07!FOSL1;;chr12:66218469..66218477,+!p16@HMGA2!0.78!5.02!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.78!5.02!ZFY;;chr11:46299199..46299233,+!p1@CREB3L1!0.77!27.84!CREB3L1;;chr5:72744594..72744609,-!p1@FOXD1!0.77!24.12!FOXD1;;chr17:41277372..41277418,-!p1@BRCA1!0.77!19.10!BRCA1;;chr16:86544113..86544145,+!p1@FOXF1!0.77!6.15!FOXF1;;chr6:85473156..85473210,-!p2@TBX18!0.77!6.15!TBX18;;chr1:170632137..170632172,+!p10@PRRX1!0.77!4.86!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!0.77!4.86!EMX2;;chr3:147111231..147111281,+!p3@ZIC1!0.77!4.86!ZIC1;;chr7:14029283..14029311,-!p1@ETV1!0.76!27.68!ETV1;;chr17:46687959..46688007,-!p2@HOXB7!0.76!6.80!HOXB7;;chr16:86612320..86612394,+!p1@FOXL1!0.76!4.69!FOXL1;;chr12:54378923..54378966,+!p1@HOXC10!0.76!4.69!HOXC10;;chr17:46622114..46622138,-!p4@HOXB2!0.75!7.45!HOXB2;;chr17:41623692..41623715,-!p1@ETV4!0.74!21.37!ETV4;;chr11:65686732..65686756,+!p2@DRAP1!0.74!21.04!DRAP1;;chr11:65686802..65686818,+!p6@DRAP1!0.74!8.26!DRAP1;;chr4:174450089..174450153,-!p2@HAND2!0.74!4.53!HAND2;;chr19:42636586..42636607,-!p1@POU2F2!0.73!13.11!POU2F2;;chr12:66218443..66218461,+!p8@HMGA2!0.73!5.83!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!0.72!29.95!SNAI2;;chr7:19157043..19157088,-!p2@TWIST1!0.72!11.65!TWIST1;;chr17:46667594..46667619,-!p1@HOXB3!0.72!4.21!HOXB3;;chr17:46671108..46671147,-!p1@HOXB5!0.72!4.21!HOXB5;;chr17:46622070..46622109,-!p1@HOXB2!0.71!9.87!HOXB2;;chr17:46690839..46690884,-!p1@HOXB8!0.70!4.05!HOXB8;;chr12:66218152..66218174,+!p10@HMGA2!0.69!4.21!HMGA2;;chr17:46691732..46691766,-!p4@HOXB8!0.69!3.88!HOXB8;;chr21:47063625..47063658,+!p1@PCBP3!0.68!18.78!PCBP3;;chr17:59477233..59477263,+!p1@TBX2!0.68!13.11!TBX2;;chr17:46688334..46688385,-!p1@HOXB7!0.68!5.83!HOXB7;;chr6:45390025..45390076,+!p2@RUNX2!0.67!9.71!RUNX2;;chr11:46299539..46299620,+!p2@CREB3L1!0.67!6.64!CREB3L1;;chr17:46655704..46655718,-!p2@HOXB4!0.67!5.83!HOXB4;;chr5:3595934..3595957,+!p2@IRX1!0.67!3.72!IRX1;;chr1:170632115..170632136,+!p9@PRRX1!0.67!3.72!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!0.67!3.72!HAND2;;chr12:54393880..54393962,+!p1@HOXC9!0.67!3.72!HOXC9;;chr12:96588143..96588185,+!p1@ELK3!0.66!51.15!ELK3;;chr17:46622205..46622218,-!p3@HOXB2!0.66!4.21!HOXB2;;chr5:3595961..3595975,+!p3@IRX1!0.66!3.56!IRX1;;chr2:119604456..119604501,-!p2@EN1!0.66!3.56!EN1;;chr2:119605214..119605230,-!p1@EN1!0.66!3.56!EN1;;chr6:34204672..34204692,+!p1@HMGA1!0.65!455.02!HMGA1;;chr16:86600426..86600441,+!p1@FOXC2!0.65!9.55!FOXC2;;chr9:132427972..132428056,+!p1@PRRX2!0.65!4.69!PRRX2;;chr3:21792585..21792625,-!p2@ZNF385D!0.65!3.88!ZNF385D;;chr8:49833978..49833996,-!p1@SNAI2!0.64!81.75!SNAI2;;chr12:66218836..66218888,+!p1@HMGA2!0.64!36.75!HMGA2;;chr7:42276787..42276815,-!p1@GLI3!0.64!10.20!GLI3;;chr7:27205136..27205164,-!p1@HOXA9!0.64!3.40!HOXA9;;chr12:54402790..54402805,+!p2@HOXC8!0.64!3.40!HOXC8;;chr1:119530493..119530572,-!p1@TBX15!0.64!3.40!TBX15;;chr2:102091478..102091490,-!p3@RFX8!0.64!3.40!RFX8;;chr3:157824001..157824078,-!p2@SHOX2!0.64!3.40!SHOX2;;chr17:46675469..46675481,-!p4@HOXB6!0.64!3.40!HOXB6;;chr6:31126291..31126399,+!p1@TCF19!0.63!36.26!TCF19;;chr4:4861385..4861398,+!p1@MSX1!0.63!11.17!MSX1;;chr21:36260773..36260804,-!p7@RUNX1!0.63!4.69!RUNX1;;chr1:170633058..170633084,+!p5@PRRX1!0.63!3.24!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!0.63!3.24!RFX8;;chr2:175199697..175199706,+!p2@SP9!0.63!3.24!SP9;;chr16:86600870..86600921,+!p2@FOXC2!0.63!3.24!FOXC2;;chr1:8926441..8926473,-!p10@ENO1!0.62!5.18!ENO1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.61!16.67!TAL1;;chr19:22817119..22817145,+!p1@ZNF492!0.61!5.67!ZNF492;;chr1:170633245..170633256,+!p14@PRRX1!0.61!3.08!PRRX1;;chr12:54379029..54379057,+!p2@HOXC10!0.61!3.08!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.61!3.08!HOXC8;;chr12:66358080..66358094,+!p15@HMGA2!0.61!3.08!HMGA2;;chr5:158527139..158527161,-!p5@EBF1!0.61!3.08!EBF1;;chr14:55493763..55493824,-!p1@WDHD1!0.60!26.87!WDHD1;;chr17:41622925..41622976,-!p3@ETV4!0.60!4.86!ETV4;;chr19:38720294..38720348,-!p1@DPF1!0.60!3.88!DPF1;;chr5:138609782..138609826,+!p5@MATR3!0.59!22.34!MATR3;;chr2:169312600..169312606,+!p2@CERS6!0.59!5.02!CERS6;;chr12:54447599..54447630,+!p3@HOXC4!0.59!3.72!HOXC4;;chr12:54422217..54422239,+!p3@HOXC6!0.59!2.91!HOXC6;;chr3:141121820..141121838,+!p9@ZBTB38!0.59!2.91!ZBTB38;;chr5:158527104..158527135,-!p4@EBF1!0.59!2.91!EBF1;;chr6:34204973..34204990,+!p4@HMGA1!0.58!46.30!HMGA1;;chr12:115121962..115121987,-!p1@TBX3!0.58!28.81!TBX3;;chr1:8934931..8934947,-!p4@ENO1!0.58!11.01!ENO1;;chr11:19263192..19263222,-!p2@E2F8!0.58!3.56!E2F8;;chr8:128748308..128748324,+!p2@MYC!0.57!93.40!MYC;;chr1:170632959..170632987,+!p4@PRRX1!0.57!3.08!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.57!2.75!PRRX1;;chr17:46675539..46675551,-!p7@HOXB6!0.57!2.75!HOXB6;;chr2:102091590..102091601,-!p5@RFX8!0.57!2.75!RFX8;;chr3:147111198..147111225,+!p4@ZIC1!0.57!2.75!ZIC1;;chr3:21792631..21792665,-!p3@ZNF385D!0.57!2.75!ZNF385D;;chr12:3068544..3068597,+!p1@TEAD4!0.56!19.59!TEAD4;;chr3:37217736..37217753,-!p2@LRRFIP2!0.56!13.44!LRRFIP2;;chr14:61116183..61116208,-!p1@SIX1!0.56!11.98!SIX1;;chr3:12329320..12329338,+!p4@PPARG!0.56!2.91!PPARG;;chr2:96012353..96012378,+!p4@KCNIP3!0.56!2.59!KCNIP3;;chr4:299227..299272,-!p1@ZNF732!0.56!2.59!ZNF732;;chr12:54447686..54447704,+!p5@HOXC4!0.56!2.59!HOXC4;;chr17:46671504..46671541,-!p2@HOXB5!0.56!2.59!HOXB5;;chr17:46675586..46675600,-!p6@HOXB6!0.56!2.59!HOXB6;;chr7:44143925..44143970,+!p1@AEBP1!0.55!71.71!AEBP1;;chr5:176738887..176738934,-!p1@MXD3!0.55!21.21!MXD3;;chr11:113930291..113930339,+!p2@ZBTB16!0.54!4.53!ZBTB16;;chr1:170632647..170632659,+!p17@PRRX1!0.54!2.43!PRRX1;;chr17:41622731..41622764,-!p5@ETV4!0.54!2.43!ETV4;;chrX:136648643..136648711,+!p2@ZIC3!0.54!2.43!ZIC3;;chr12:2986275..2986363,-!p1@FOXM1!0.53!30.76!FOXM1;;chr7:42276822..42276895,-!p2@GLI3!0.53!8.58!GLI3;;chr17:41622834..41622883,-!p6@ETV4!0.53!3.08!ETV4;;chr16:54320675..54320715,-!p1@IRX3!0.52!5.83!IRX3;;chr4:206390..206444,+!p1@ZNF876P!0.52!4.69!ZNF876P;;chr20:42295745..42295765,+!p1@MYBL2!0.51!47.43!MYBL2;;chr20:39946361..39946379,-!p2@ZHX3!0.51!8.26!ZHX3;;chr4:26322267..26322334,+!p3@RBPJ!0.51!6.47!RBPJ;;chr2:185463247..185463263,+!p1@ZNF804A!0.51!4.53!ZNF804A;;chr12:66218003..66218018,+!p9@HMGA2!0.51!2.91!HMGA2;;chr12:54380404..54380433,+!p3@HOXC10!0.51!2.27!HOXC10;;chr12:54394309..54394336,+!p2@HOXC9!0.51!2.27!HOXC9;;chr2:96012397..96012417,+!p3@KCNIP3!0.51!2.27!KCNIP3;;chr3:147127177..147127194,+!p2@ZIC1!0.51!2.27!ZIC1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.51!2.27!PEG3;;chr1:170632310..170632321,+!p15@PRRX1!0.51!2.27!PRRX1;;chr7:27205106..27205134,-!p2@HOXA9!0.51!2.27!HOXA9;;chr8:25902876..25902936,-!p1@EBF2!0.51!2.27!EBF2;;chr12:77459306..77459365,-!p1@E2F7!0.50!35.61!E2F7;;chr20:42295713..42295738,+!p2@MYBL2!0.50!16.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+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=

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FF:11454-119A5: Difference between revisions

From FANTOM5_SSTAR

Revision as of 21:06, 9 July 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0