FF:14305-155C3: Difference between revisions

Revision as of 00:09, 10 July 2012

Name:	Fibroblast - skin spinal muscular atrophy, donor3 (nuclear fraction)
Species:	Human (Homo sapiens)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	NA
sex	M
age	7 month old child
cell type	fibroblast
cell line	NA
company	Coriell
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	custom
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.261
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.277
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.869
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.126
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.327
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.659
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.174
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.117
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.776
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.132
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.199
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.106
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.443
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.584
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0155
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0976
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0711
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.116
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.162
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.233
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.721
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.233
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	1.412
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.542
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.927
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.995
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12398

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0969
MA0003.1	MA0003.1	0.48
MA0004.1	MA0004.1	0.0276
MA0006.1	MA0006.1	0.607
MA0007.1	MA0007.1	0.156
MA0009.1	MA0009.1	0.464
MA0014.1	MA0014.1	0.373
MA0017.1	MA0017.1	0.00408
MA0018.2	MA0018.2	0.53
MA0019.1	MA0019.1	0.491
MA0024.1	MA0024.1	0.232
MA0025.1	MA0025.1	0.0174
MA0027.1	MA0027.1	0.844
MA0028.1	MA0028.1	0.208
MA0029.1	MA0029.1	0.802
MA0030.1	MA0030.1	0.154
MA0031.1	MA0031.1	0.0834
MA0035.2	MA0035.2	8.05032e-5
MA0038.1	MA0038.1	0.934
MA0039.2	MA0039.2	0.023
MA0040.1	MA0040.1	0.594
MA0041.1	MA0041.1	0.797
MA0042.1	MA0042.1	0.852
MA0043.1	MA0043.1	0.122
MA0046.1	MA0046.1	0.359
MA0047.2	MA0047.2	0.844
MA0048.1	MA0048.1	0.00683
MA0050.1	MA0050.1	0.00112
MA0051.1	MA0051.1	0.00315
MA0052.1	MA0052.1	0.317
MA0055.1	MA0055.1	0.6
MA0057.1	MA0057.1	0.651
MA0058.1	MA0058.1	0.00855
MA0059.1	MA0059.1	0.0357
MA0060.1	MA0060.1	0.239
MA0061.1	MA0061.1	6.06367e-4
MA0062.2	MA0062.2	0.0187
MA0065.2	MA0065.2	0.00161
MA0066.1	MA0066.1	0.756
MA0067.1	MA0067.1	0.855
MA0068.1	MA0068.1	0.575
MA0069.1	MA0069.1	0.0129
MA0070.1	MA0070.1	0.319
MA0071.1	MA0071.1	0.201
MA0072.1	MA0072.1	0.257
MA0073.1	MA0073.1	0.71
MA0074.1	MA0074.1	0.46
MA0076.1	MA0076.1	0.722
MA0077.1	MA0077.1	0.233
MA0078.1	MA0078.1	0.627
MA0079.2	MA0079.2	0.123
MA0080.2	MA0080.2	1.35004e-8
MA0081.1	MA0081.1	0.0377
MA0083.1	MA0083.1	3.7531e-4
MA0084.1	MA0084.1	0.639
MA0087.1	MA0087.1	0.437
MA0088.1	MA0088.1	0.208
MA0090.1	MA0090.1	1.7326e-4
MA0091.1	MA0091.1	0.855
MA0092.1	MA0092.1	0.717
MA0093.1	MA0093.1	0.0461
MA0099.2	MA0099.2	0.941
MA0100.1	MA0100.1	0.432
MA0101.1	MA0101.1	9.23601e-5
MA0102.2	MA0102.2	0.193
MA0103.1	MA0103.1	7.02537e-6
MA0104.2	MA0104.2	2.46938e-4
MA0105.1	MA0105.1	0.0403
MA0106.1	MA0106.1	0.216
MA0107.1	MA0107.1	1.59764e-4
MA0108.2	MA0108.2	0.106
MA0111.1	MA0111.1	0.138
MA0112.2	MA0112.2	0.538
MA0113.1	MA0113.1	0.492
MA0114.1	MA0114.1	0.00152
MA0115.1	MA0115.1	0.0334
MA0116.1	MA0116.1	0.502
MA0117.1	MA0117.1	0.404
MA0119.1	MA0119.1	0.726
MA0122.1	MA0122.1	0.268
MA0124.1	MA0124.1	0.0806
MA0125.1	MA0125.1	0.149
MA0131.1	MA0131.1	0.754
MA0135.1	MA0135.1	0.484
MA0136.1	MA0136.1	2.74773e-7
MA0137.2	MA0137.2	0.111
MA0138.2	MA0138.2	0.653
MA0139.1	MA0139.1	0.408
MA0140.1	MA0140.1	0.0123
MA0141.1	MA0141.1	0.00466
MA0142.1	MA0142.1	0.1
MA0143.1	MA0143.1	0.996
MA0144.1	MA0144.1	0.196
MA0145.1	MA0145.1	0.925
MA0146.1	MA0146.1	0.0688
MA0147.1	MA0147.1	0.0044
MA0148.1	MA0148.1	0.212
MA0149.1	MA0149.1	0.152
MA0150.1	MA0150.1	0.0932
MA0152.1	MA0152.1	0.212
MA0153.1	MA0153.1	0.991
MA0154.1	MA0154.1	0.598
MA0155.1	MA0155.1	0.724
MA0156.1	MA0156.1	0.00384
MA0157.1	MA0157.1	0.123
MA0159.1	MA0159.1	0.176
MA0160.1	MA0160.1	4.73799e-4
MA0162.1	MA0162.1	0.0318
MA0163.1	MA0163.1	0.537
MA0164.1	MA0164.1	0.59
MA0258.1	MA0258.1	0.374
MA0259.1	MA0259.1	0.27

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12398

Novel motif	Logo	P-value
1	1	0.0768
10	10	0.376
100	100	0.486
101	101	0.309
102	102	0.0758
103	103	0.313
104	104	0.929
105	105	0.529
106	106	0.126
107	107	0.975
108	108	0.919
109	109	0.013
11	11	0.129
110	110	0.624
111	111	0.0703
112	112	0.602
113	113	0.0163
114	114	0.322
115	115	0.262
116	116	0.779
117	117	0.105
118	118	0.414
119	119	0.307
12	12	0.937
120	120	0.754
121	121	0.838
122	122	0.0595
123	123	0.00104
124	124	0.063
125	125	0.704
126	126	0.233
127	127	0.516
128	128	0.188
129	129	0.107
13	13	0.619
130	130	0.991
131	131	0.399
132	132	0.623
133	133	0.328
134	134	0.923
135	135	0.837
136	136	0.131
137	137	0.918
138	138	0.533
139	139	0.108
14	14	0.447
140	140	0.608
141	141	0.214
142	142	0.984
143	143	0.667
144	144	0.719
145	145	0.928
146	146	0.142
147	147	0.158
148	148	0.11
149	149	0.266
15	15	0.0534
150	150	0.608
151	151	0.131
152	152	0.479
153	153	0.648
154	154	0.482
155	155	0.0167
156	156	0.589
157	157	0.34
158	158	0.108
159	159	0.715
16	16	0.806
160	160	0.257
161	161	0.022
162	162	0.581
163	163	0.382
164	164	0.91
165	165	0.703
166	166	0.00483
167	167	0.314
168	168	0.991
169	169	0.853
17	17	0.719
18	18	0.759
19	19	0.257
2	2	0.897
20	20	0.418
21	21	0.502
22	22	0.825
23	23	0.801
24	24	0.37
25	25	0.126
26	26	0.896
27	27	0.488
28	28	0.688
29	29	0.958
3	3	0.445
30	30	0.569
31	31	0.667
32	32	8.05793e-7
33	33	0.215
34	34	0.611
35	35	0.515
36	36	0.0245
37	37	0.72
38	38	0.278
39	39	0.978
4	4	0.35
40	40	0.0466
41	41	0.78
42	42	0.286
43	43	0.451
44	44	0.373
45	45	0.492
46	46	0.499
47	47	0.128
48	48	0.332
49	49	0.0708
5	5	0.734
50	50	0.799
51	51	0.466
52	52	0.645
53	53	0.323
54	54	0.486
55	55	0.533
56	56	0.294
57	57	0.994
58	58	0.119
59	59	0.73
6	6	0.872
60	60	0.309
61	61	0.144
62	62	0.0841
63	63	0.565
64	64	0.207
65	65	0.473
66	66	0.43
67	67	0.813
68	68	0.866
69	69	0.676
7	7	0.0684
70	70	0.0748
71	71	0.804
72	72	0.271
73	73	0.448
74	74	0.323
75	75	0.0754
76	76	0.534
77	77	0.898
78	78	0.0126
79	79	0.149
8	8	0.181
80	80	0.551
81	81	0.38
82	82	0.725
83	83	0.0539
84	84	0.362
85	85	0.683
86	86	0.521
87	87	0.486
88	88	0.721
89	89	0.923
9	9	0.969
90	90	0.237
91	91	0.8
92	92	0.429
93	93	0.641
94	94	0.556
95	95	0.016
96	96	0.735
97	97	0.531
98	98	0.0486
99	99	0.521

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12398

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
FF:0000670 human Fibroblast - skin spinal muscular atrophy, nuclear fraction sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000251 (human fibroblast - skin spinal muscular atrophy sample)
0000406 (nuclear fraction sample)
0000670 (human Fibroblast - skin spinal muscular atrophy, nuclear fraction sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 10: / Line 10: @@
 |def=
 |expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.67!471.45!LHX9;;chr7:19157248..19157268,-!p1@TWIST1!2.05!297.50!TWIST1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.72!51.83!HOXC5;;chr20:50179368..50179392,-!p2@NFATC2!1.70!62.48!NFATC2;;chr9:132427883..132427951,+!p2@PRRX2!1.63!41.18!PRRX2;;chr15:57511609..57511651,+!p2@TCF12!1.55!56.80!TCF12;;chr15:37392534..37392562,-!p10@MEIS2!1.50!33.37!MEIS2;;chr10:28034739..28034756,-!p1@MKX!1.48!29.47!MKX;;chr8:67525443..67525459,-!p2@MYBL1!1.44!39.05!MYBL1;;chr19:45971246..45971265,+!p1@FOSB!1.42!451.22!FOSB;;chr11:46299539..46299620,+!p2@CREB3L1!1.42!41.89!CREB3L1;;chr11:46299199..46299233,+!p1@CREB3L1!1.41!123.19!CREB3L1;;chr2:176969228..176969260,+!p1@HOXD11!1.40!24.14!HOXD11;;chr2:176969097..176969109,+!p3@HOXD11!1.38!22.72!HOXD11;;chr1:170632285..170632309,+!p1@PRRX1!1.36!24.85!PRRX1;;chr1:197886421..197886432,+!p2@LHX9!1.34!20.95!LHX9;;chr6:19837592..19837621,+!p1@ID4!1.31!116.09!ID4;;chrY:21906594..21906622,-!p1@KDM5D!1.29!18.46!KDM5D;;chr2:176969179..176969226,+!p2@HOXD11!1.29!18.46!HOXD11;;chr15:37392703..37392717,-!p8@MEIS2!1.28!25.56!MEIS2;;chr15:37392616..37392638,-!p2@MEIS2!1.26!53.25!MEIS2;;chr3:147111231..147111281,+!p3@ZIC1!1.24!16.33!ZIC1;;chr15:37392724..37392757,-!p1@MEIS2!1.22!69.94!MEIS2;;chr15:37390850..37390909,-!p3@MEIS2!1.21!29.82!MEIS2;;chr10:119303078..119303169,+!p2@EMX2!1.18!14.20!EMX2;;chr5:72744594..72744609,-!p1@FOXD1!1.17!63.19!FOXD1;;chr5:2751762..2751784,-!p1@IRX2!1.17!13.85!IRX2;;chr7:27205136..27205164,-!p1@HOXA9!1.17!13.85!HOXA9;;chr14:75745523..75745537,+!p1@FOS!1.16!1601.09!FOS;;chr9:132427972..132428056,+!p1@PRRX2!1.16!17.40!PRRX2;;chr11:46316699..46316719,+!p10@CREB3L1!1.15!13.14!CREB3L1;;chr3:147111198..147111225,+!p4@ZIC1!1.14!12.78!ZIC1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.13!12.43!RUNX1T1;;chr18:22932080..22932170,-!p1@ZNF521!1.11!50.41!ZNF521;;chr4:174451370..174451387,-!p1@HAND2!1.10!11.72!HAND2;;chr1:197886665..197886732,+!p3@LHX9!1.10!11.72!LHX9;;chr20:55204351..55204377,+!p1@TFAP2C!1.09!14.56!TFAP2C;;chr2:102091566..102091581,-!p1@RFX8!1.09!11.36!RFX8;;chr2:176969124..176969155,+!p5@HOXD11!1.09!11.36!HOXD11;;chr5:321810..321877,+!p1@AHRR!1.08!35.50!AHRR;;chr7:27224842..27224872,-!p1@HOXA11!1.08!11.01!HOXA11;;chr2:177001290..177001315,+!p1@HOXD3!1.07!10.65!HOXD3;;chr1:170632959..170632987,+!p4@PRRX1!1.05!11.36!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!1.04!9.94!HOXA3;;chr14:24837368..24837401,+!p1@NFATC4!1.02!22.72!NFATC4;;chr21:36260773..36260804,-!p7@RUNX1!1.02!12.78!RUNX1;;chr2:200322654..200322707,-!p2@SATB2!1.01!13.49!SATB2;;chr15:37390482..37390572,-!p7@MEIS2!1.01!12.78!MEIS2;;chr15:37392576..37392589,-!p12@MEIS2!1.01!11.36!MEIS2;;chr5:158526917..158526932,-!p1@EBF1!0.98!22.01!EBF1;;chr7:137686763..137686784,-!p5@CREB3L2!0.98!14.91!CREB3L2;;chr1:170633348..170633399,+!p2@PRRX1!0.98!11.72!PRRX1;;chr2:172950227..172950249,+!p2@DLX1!0.98!8.52!DLX1;;chr12:115121962..115121987,-!p1@TBX3!0.97!72.78!TBX3;;chr4:81118647..81118666,+!p1@PRDM8!0.97!11.01!PRDM8;;chr7:42276787..42276815,-!p1@GLI3!0.96!22.37!GLI3;;chr5:72743793..72743855,-!p4@FOXD1!0.96!9.59!FOXD1;;chr3:114343768..114343822,-!p1@ZBTB20!0.95!35.86!ZBTB20;;chr9:3525727..3525828,-!p2@RFX3!0.95!20.59!RFX3;;chr15:37392593..37392607,-!p13@MEIS2!0.95!9.59!MEIS2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.95!8.52!GLIS1;;chr12:124873357..124873401,-!p1@NCOR2!0.94!93.72!NCOR2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.94!7.81!HOXC5;;chr7:27205106..27205134,-!p2@HOXA9!0.94!7.81!HOXA9;;chr7:44143925..44143970,+!p1@AEBP1!0.93!175.73!AEBP1;;chr10:63809106..63809127,+!p1@ARID5B!0.93!106.50!ARID5B;;chr1:170632723..170632739,+!p8@PRRX1!0.93!7.46!PRRX1;;chr10:114710244..114710257,+!p3@TCF7L2!0.91!20.24!TCF7L2;;chr6:10415276..10415341,-!p2@TFAP2A!0.91!8.88!TFAP2A;;chr8:93074848..93074871,-!p3@RUNX1T1!0.91!7.10!RUNX1T1;;chrY:21906761..21906810,-!p2@KDM5D!0.91!7.10!KDM5D;;chr1:170632250..170632277,+!p7@PRRX1!0.91!7.10!PRRX1;;chr11:46299186..46299195,+!p3@CREB3L1!0.90!7.81!CREB3L1;;chr2:66662281..66662308,+!p1@MEIS1!0.89!24.14!MEIS1;;chr2:208031943..208031978,-!p5@KLF7!0.89!9.23!KLF7;;chr3:147111505..147111529,+!p6@ZIC1!0.89!6.75!ZIC1;;chr6:100912752..100912778,-!p2@SIM1!0.89!6.75!SIM1;;chr7:27224795..27224840,-!p2@HOXA11!0.89!6.75!HOXA11;;chr16:51185172..51185197,-!p1@SALL1!0.89!6.75!SALL1;;chr2:239756671..239756732,+!p1@TWIST2!0.88!22.01!TWIST2;;chr2:19558373..19558392,-!p1@OSR1!0.88!18.82!OSR1;;chr2:239756739..239756755,+!p2@TWIST2!0.88!11.72!TWIST2;;chr17:38256799..38256815,-!p3@NR1D1!0.87!12.07!NR1D1;;chr2:102091144..102091183,-!p2@RFX8!0.87!6.39!RFX8;;chr4:174450089..174450153,-!p2@HAND2!0.87!6.39!HAND2;;chr10:119302645..119302712,+!p3@EMX2!0.87!6.39!EMX2;;chr18:53254566..53254567,-!p8@TCF4!0.86!10.65!TCF4;;chr12:52445218..52445237,+!p1@NR4A1!0.85!82.36!NR4A1;;chr1:200379104..200379128,-!p2@ZNF281!0.85!15.62!ZNF281;;chr3:147127142..147127168,+!p1@ZIC1!0.85!6.04!ZIC1;;chr1:59249688..59249703,-!p3@JUN!0.84!37.99!JUN;;chr12:80085061..80085119,-!p6@PAWR!0.82!9.23!PAWR;;chr2:176994408..176994492,+!p1@HOXD8!0.82!5.68!HOXD8;;chr4:111558135..111558198,-!p2@PITX2!0.82!5.68!PITX2;;chr7:27213893..27213954,-!p1@HOXA10!0.82!5.68!HOXA10;;chr1:170633058..170633084,+!p5@PRRX1!0.82!5.68!PRRX1;;chr7:150945754..150945789,-!p2@SMARCD3!0.81!17.75!SMARCD3;;chr9:102584262..102584276,+!p1@NR4A3!0.81!12.78!NR4A3;;chr2:121493425..121493474,+!p1@GLI2!0.81!12.78!GLI2;;chr21:36421535..36421610,-!p2@RUNX1!0.80!20.24!RUNX1;;chr21:36259445..36259519,-!p4@RUNX1!0.80!15.98!RUNX1;;chr15:37390374..37390422,-!p9@MEIS2!0.80!6.75!MEIS2;;chr5:2751785..2751808,-!p2@IRX2!0.80!5.33!IRX2;;chr2:172949484..172949522,+!p1@DLX1!0.80!5.33!DLX1;;chr12:53614115..53614154,-!p1@RARG!0.79!29.82!RARG;;chr7:44143978..44143989,+!p2@AEBP1!0.79!9.94!AEBP1;;chr5:137801160..137801176,+!p1@EGR1!0.78!545.29!EGR1;;chr20:30193083..30193098,+!p1@ID1!0.78!440.92!ID1;;chr17:46125685..46125699,+!p3@NFE2L1!0.78!18.82!NFE2L1;;chr19:58220517..58220583,-!p1@ZNF154!0.78!17.04!ZNF154;;chr5:72744562..72744573,-!p3@FOXD1!0.78!6.39!FOXD1;;chr3:21792585..21792625,-!p2@ZNF385D!0.78!5.68!ZNF385D;;chr5:3595977..3595999,+!p1@IRX1!0.78!4.97!IRX1;;chr8:93115445..93115462,-!p7@RUNX1T1!0.78!4.97!RUNX1T1;;chr1:119530493..119530572,-!p1@TBX15!0.78!4.97!TBX15;;chr10:119302232..119302265,+!p1@EMX2!0.78!4.97!EMX2;;chr10:28032421..28032494,-!p2@MKX!0.78!4.97!MKX;;chr12:114843940..114843955,-!p2@TBX5!0.78!4.97!TBX5;;chr10:63661437..63661465,+!p2@ARID5B!0.77!101.53!ARID5B;;chr8:49833948..49833973,-!p2@SNAI2!0.77!33.73!SNAI2;;chr19:13134772..13134822,+!p2@NFIX!0.77!7.46!NFIX;;chrX:128657457..128657475,-!p1@SMARCA1!0.76!60.00!SMARCA1;;chr14:62162258..62162269,+!p2@HIF1A!0.76!50.06!HIF1A;;chr11:12696071..12696086,+!p3@TEAD1!0.76!6.39!TEAD1;;chr10:63809134..63809145,+!p6@ARID5B!0.75!11.36!ARID5B;;chr10:63809077..63809089,+!p5@ARID5B!0.75!10.65!ARID5B;;chr21:36260295..36260310,-!p3@RUNX1!0.75!7.81!RUNX1;;chr3:157823517..157823562,-!p1@SHOX2!0.75!4.97!SHOX2;;chr2:172967276..172967296,-!p3@DLX2!0.75!4.62!DLX2;;chr2:66662396..66662407,+!p4@MEIS1!0.75!4.62!MEIS1;;chr19:47523058..47523114,+!p1@NPAS1!0.75!4.62!NPAS1;;chr1:119530636..119530653,-!p2@TBX15!0.75!4.62!TBX15;;chr10:119302268..119302282,+!p4@EMX2!0.75!4.62!EMX2;;chr12:54402745..54402788,+!p1@HOXC8!0.75!4.62!HOXC8;;chr15:37392094..37392116,-!p6@MEIS2!0.74!5.68!MEIS2;;chr2:208394817..208394834,+!p3@CREB1!0.73!19.53!CREB1;;chr4:95128841..95128865,+!p4@SMARCAD1!0.73!9.59!SMARCAD1;;chr6:144329384..144329405,-!p1@PLAGL1!0.72!55.74!PLAGL1;;chr1:59249645..59249656,-!p4@JUN!0.72!11.72!JUN;;chr2:121493492..121493537,+!p2@GLI2!0.72!7.46!GLI2;;chr5:72744445..72744466,-!p2@FOXD1!0.72!7.46!FOXD1;;chr5:43067636..43067674,+!p6@ZNF131!0.72!6.04!ZNF131;;chr1:170633262..170633285,+!p3@PRRX1!0.72!4.97!PRRX1;;chr5:158527139..158527161,-!p5@EBF1!0.72!4.26!EBF1;;chr7:1577076..1577095,+!p5@MAFK!0.72!4.26!MAFK;;chr2:100721881..100721904,-!p6@AFF3!0.72!4.26!AFF3;;chr2:66662895..66662907,+!p3@MEIS1!0.71!5.33!MEIS1;;chr1:23885981..23886002,-!p1@ID3!0.70!807.29!ID3;;chr1:59249707..59249727,-!p1@JUN!0.70!190.64!JUN;;chr9:4300050..4300118,-!p1@GLIS3!0.70!29.47!GLIS3;;chr12:124873852..124873881,-!p3@NCOR2!0.70!27.34!NCOR2;;chr10:63809013..63809041,+!p3@ARID5B!0.70!24.85!ARID5B;;chr11:65687362..65687436,+!p3@DRAP1!0.70!20.59!DRAP1;;chr19:45972701..45972774,+!p2@FOSB!0.70!5.68!FOSB;;chr18:53068911..53068935,-!p4@TCF4!0.70!4.62!TCF4;;chr8:49833978..49833996,-!p1@SNAI2!0.69!91.24!SNAI2;;chr15:83953397..83953425,-!p1@BNC1!0.69!4.62!BNC1;;chr15:57511589..57511608,+!p4@TCF12!0.69!3.91!TCF12;;chr19:9609272..9609297,-!p1@ZNF560!0.69!3.91!ZNF560;;chr8:93115274..93115323,-!p4@RUNX1T1!0.69!3.91!RUNX1T1;;chr7:17338266..17338282,+!p1@AHR!0.68!46.51!AHR;;chr19:6110474..6110551,-!p1@RFX2!0.68!26.27!RFX2;;chr5:137804484..137804498,+!p2@EGR1!0.68!17.04!EGR1;;chrX:106960180..106960197,-!p2@TSC22D3!0.68!16.33!TSC22D3;;chr12:72056800..72056834,+!p1@THAP2!0.68!5.33!THAP2;;chr7:44143997..44144008,+!p3@AEBP1!0.68!4.97!AEBP1;;chr9:102584241..102584261,+!p4@NR4A3!0.67!6.04!NR4A3;;chr19:49864746..49864780,-!p2@TEAD2!0.67!5.33!TEAD2;;chr12:125002739..125002756,-!p6@NCOR2!0.66!5.68!NCOR2;;chr10:28035133..28035148,-!p3@MKX!0.66!3.55!MKX;;chr11:46333934..46333963,+!p5@CREB3L1!0.66!3.55!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.66!3.55!TBX3;;chr14:74256981..74256994,-!p16@C14orf43!0.66!3.55!C14orf43;;chr2:100721328..100721348,-!p4@AFF3!0.66!3.55!AFF3;;chr2:172967242..172967265,-!p2@DLX2!0.66!3.55!DLX2;;chr3:138665937..138665968,-!p1@FOXL2!0.66!3.55!FOXL2;;chr16:86612320..86612394,+!p1@FOXL1!0.66!3.55!FOXL1;;chr1:170632477..170632506,+!p6@PRRX1!0.66!3.55!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.66!3.55!PRRX1;;chr8:93115584..93115642,-!p5@RUNX1T1!0.66!3.55!RUNX1T1;;chr19:16435625..16435682,+!p1@KLF2!0.65!130.64!KLF2;;chr17:38256822..38256851,-!p1@NR1D1!0.65!31.95!NR1D1;;chr12:66218598..66218645,+!p2@HMGA2!0.65!18.46!HMGA2;;chr3:37217736..37217753,-!p2@LRRFIP2!0.65!16.69!LRRFIP2;;chr21:36260343..36260402,-!p6@RUNX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CDC5L;;chr6:108881012..108881034,+!p3@FOXO3!0.27!5.33!FOXO3;;chr15:57210961..57211012,+!p3@TCF12!0.27!4.62!TCF12;;chr19:44598498..44598529,+!p1@ZNF224!0.27!4.62!ZNF224;;chr19:21106081..21106115,+!p2@ZNF85!0.27!4.26!ZNF85;;chr14:21994337..21994442,-!p1@SALL2!0.27!3.91!SALL2;;chr19:31840313..31840380,-!p1@TSHZ3!0.27!3.55!TSHZ3;;chr19:42759300..42759324,-!p2@ERF!0.27!3.55!ERF;;chr20:25677443..25677464,-!p2@ZNF337!0.27!3.20!ZNF337;;chr6:144289132..144289134,-!p3@PLAGL1!0.27!3.20!PLAGL1;;chr4:121843844..121843904,-!p1@PRDM5!0.27!3.20!PRDM5;;chr1:45805372..45805413,+!p4@TOE1!0.27!2.84!TOE1;;chr19:9420483..9420530,-!p@chr19:9420483..9420530,-!0.27!2.49!ZNF699;;chr10:114710553..114710585,+!p6@TCF7L2!0.27!2.13!TCF7L2;;chr12:6798523..6798548,-!p6@ZNF384!0.27!2.13!ZNF384;;chr9:16870710..16870763,-!p1@BNC2!0.27!2.13!BNC2;;chr19:52772821..52772828,+!p2@ZNF766!0.27!1.78!ZNF766;;chr18:52989081..52989117,-!p7@TCF4!0.27!1.78!TCF4;;chr13:46542074..46542106,-!p6@ZC3H13!0.27!1.42!ZC3H13;;chr13:74708246..74708264,-!p8@KLF12!0.27!1.07!KLF12;;chr19:20748603..20748606,-!p4@ZNF737!0.27!1.07!ZNF737;;chr19:20748620..20748630,-!p3@ZNF737!0.27!1.07!ZNF737;;chr1:209979467..209979494,-!p1@IRF6!0.27!1.07!IRF6;;chr7:77428248..77428259,+!p5@PHTF2!0.27!1.07!PHTF2;;chr3:37217756..37217844,-!p1@LRRFIP2!0.26!104.73!LRRFIP2;;chr11:128392085..128392232,-!p1@ETS1!0.26!55.03!ETS1;;chr1:59165724..59165751,-!p1@MYSM1!0.26!37.28!MYSM1;;chr2:28616337..28616355,+!p2@FOSL2!0.26!29.11!FOSL2;;chr18:47807845..47807918,-!p1@MBD1!0.26!28.05!MBD1;;chr20:39946279..39946356,-!p1@ZHX3!0.26!24.85!ZHX3;;chr19:44669221..44669274,+!p1@ZNF226,p1@ZNF234!0.26!17.04!ZNF226;;chr4:124374..124410,+!p2@ZNF718!0.26!16.33!ZNF718;;chr10:3827417..3827428,-!p3@KLF6!0.26!13.49!KLF6;;chr9:104161123..104161205,+!p1@ZNF189!0.26!11.01!ZNF189;;chr17:17740330..17740349,-!p3@SREBF1!0.26!10.30!SREBF1;;chr19:21512202..21512225,-!p1@ZNF708!0.26!7.81!ZNF708;;chr11:65479462..65479517,+!p2@KAT5!0.26!6.04!KAT5;;chr12:57504975..57505019,-!p2@STAT6!0.26!6.04!STAT6;;chr13:41635285..41635356,-!p3@ELF1!0.26!6.04!ELF1;;chr12:54019757..54019804,-!p2@ATF7!0.26!5.68!ATF7;;chr19:44617538..44617598,+!p1@ZNF225!0.26!5.68!ZNF225;;chr1:249132484..249132505,+!p4@ZNF672!0.26!4.26!ZNF672;;chr18:74534479..74534551,+!p1@ZNF236!0.26!4.26!ZNF236;;chr8:22550982..22550999,-!p1@EGR3!0.26!3.91!EGR3;;chr10:38146994..38147039,-!p2@ZNF248!0.26!3.20!ZNF248;;chr10:76585205..76585251,+!p3@KAT6B!0.26!2.84!KAT6B;;chr16:3313791..3313834,+!p2@ZNF263!0.26!2.84!ZNF263;;chrX:101975643..101975683,+!p1@BHLHB9!0.26!2.84!BHLHB9;;chr6:42419514..42419606,-!p1@TRERF1!0.26!2.84!TRERF1;;chr7:99070527..99070542,+!p2@ZNF789!0.26!2.84!ZNF789;;chr8:128750175..128750201,+!p8@MYC!0.26!2.13!MYC;;chr19:37407172..37407217,-!p2@ZNF829!0.26!2.13!ZNF829;;chr12:53574398..53574412,+!p3@ZNF740!0.26!2.13!ZNF740;;chr12:19592563..19592585,+!p5@AEBP2!0.26!1.78!AEBP2;;chr6:45390300..45390335,+!p4@RUNX2!0.26!1.78!RUNX2;;chr7:27788205..27788255,+!p2@TAX1BP1!0.26!1.78!TAX1BP1;;chr13:74708269..74708291,-!p7@KLF12!0.26!1.42!KLF12;;chr1:6640110..6640130,+!p2@ZBTB48!0.26!1.42!ZBTB48;;chr15:96869114..96869160,+!p11@NR2F2!0.26!1.42!NR2F2;;chr16:69727150..69727178,+!p7@NFAT5!0.26!1.07!NFAT5;;chr19:19303794..19303805,+!p5@RFXANK!0.26!1.07!RFXANK;;chr11:85375237..85375277,-!p4@CREBZF!0.26!1.07!CREBZF;;chr3:71631382..71631413,-!p20@FOXP1!0.26!1.07!FOXP1;;chr1:78444738..78444773,-!p1@FUBP1!0.25!174.31!FUBP1;;chr12:57505121..57505179,-!p1@STAT6!0.25!62.84!STAT6;;chr21:36260980..36261011,-!p1@RUNX1!0.25!46.15!RUNX1;;chr7:135194822..135194860,-!p1@CNOT4!0.25!42.60!CNOT4;;chr7:106809432..106809455,+!p1@HBP1!0.25!30.89!HBP1;;chr17:70117153..70117174,+!p1@SOX9!0.25!15.98!SOX9;;chr3:40566428..40566480,+!p1@ZNF621!0.25!12.07!ZNF621;;chr18:72265084..72265143,+!p1@ZNF407!0.25!11.36!ZNF407;;chr19:11925071..11925113,+!p1@ZNF440!0.25!11.01!ZNF440;;
+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=

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FF:14305-155C3: Difference between revisions

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Revision as of 00:09, 10 July 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0