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MCL coexpression mm9:1918: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000034!3.19e-13!97;CL:0000723!6.73e-13!91;CL:0000048!6.73e-13!91;CL:0000988!1.04e-10!32;CL:0002032!1.04e-10!32;CL:0000037!1.04e-10!32;CL:0000566!1.04e-10!32;CL:0000837!1.04e-10!32;CL:0002242!1.47e-10!16;CL:0000838!1.30e-08!12;CL:0000542!1.73e-08!13;CL:0000051!1.73e-08!13;CL:0000084!5.77e-08!11;CL:0000827!5.77e-08!11;CL:0002031!8.20e-08!25;CL:0002371!9.56e-08!118;CL:0000791!2.51e-07!9;CL:0000789!2.51e-07!9;CL:0002420!2.51e-07!9;CL:0002419!2.51e-07!9;CL:0000790!2.51e-07!9;CL:0000738!2.75e-07!17;CL:0002087!2.75e-07!17;CL:0002320!2.84e-07!46;CL:0000134!2.84e-07!46;CL:0000548!5.53e-07!115;CL:0000255!5.53e-07!115;CL:0000624!9.93e-07!8
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001017!2.72e-08!73;UBERON:0004121!1.80e-07!95;UBERON:0000924!1.80e-07!95;UBERON:0006601!1.80e-07!95;UBERON:0001016!2.47e-07!75;UBERON:0002384!2.84e-07!46
}}
}}

Revision as of 17:38, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:79862567..79862593,+p@chr10:79862567..79862593
+
Mm9::chr15:36937300..36937347,+p1@uc007vnd.1
Mm9::chr5:152171015..152171049,-p@chr5:152171015..152171049
-
Mm9::chr5:96639024..96639045,-p@chr5:96639024..96639045
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
stem cell3.19e-1397
somatic stem cell6.73e-1391
multi fate stem cell6.73e-1391
hematopoietic cell1.04e-1032
hematopoietic oligopotent progenitor cell1.04e-1032
hematopoietic stem cell1.04e-1032
angioblastic mesenchymal cell1.04e-1032
hematopoietic multipotent progenitor cell1.04e-1032
nucleate cell1.47e-1016
lymphoid lineage restricted progenitor cell1.30e-0812
lymphocyte1.73e-0813
common lymphoid progenitor1.73e-0813
T cell5.77e-0811
pro-T cell5.77e-0811
hematopoietic lineage restricted progenitor cell8.20e-0825
somatic cell9.56e-08118
mature alpha-beta T cell2.51e-079
alpha-beta T cell2.51e-079
immature T cell2.51e-079
mature T cell2.51e-079
immature alpha-beta T cell2.51e-079
leukocyte2.75e-0717
nongranular leukocyte2.75e-0717
connective tissue cell2.84e-0746
mesenchymal cell2.84e-0746
animal cell5.53e-07115
eukaryotic cell5.53e-07115
CD4-positive, alpha-beta T cell9.93e-078

Uber Anatomy
Ontology termp-valuen
central nervous system2.72e-0873
ectoderm-derived structure1.80e-0795
ectoderm1.80e-0795
presumptive ectoderm1.80e-0795
nervous system2.47e-0775
connective tissue2.84e-0746


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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